Wall clock time and date at job start Tue Mar 31 2020 17:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35918 * 116.99999 * 2 1 4 4 C 1.38852 * 120.40442 * 0.02562 * 3 2 1 5 5 N 1.31889 * 120.99853 * 179.97438 * 4 3 2 6 6 C 1.31680 * 121.94246 * 359.70460 * 5 4 3 7 7 C 1.39522 * 120.68906 * 0.58666 * 6 5 4 8 8 C 1.47857 * 120.53252 * 179.70691 * 7 6 5 9 9 O 1.21550 * 120.00147 * 175.02325 * 8 7 6 10 10 N 1.34774 * 119.99826 * 355.01497 * 8 7 6 11 11 C 1.46504 * 119.99997 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.46850 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.50004 * 305.06577 * 12 11 10 14 14 C 1.53044 * 109.49465 * 184.99818 * 12 11 10 15 15 C 1.53040 * 109.53586 * 178.68448 * 14 12 11 16 16 C 1.53194 * 109.31406 * 61.36644 * 15 14 12 17 17 N 1.46922 * 108.77382 * 305.36114 * 16 15 14 18 18 C 1.36937 * 120.63193 * 233.58297 * 17 16 15 19 19 H 1.08002 * 119.99796 * 154.37728 * 18 17 16 20 20 C 1.38808 * 119.99906 * 334.37715 * 18 17 16 21 21 N 1.31625 * 120.00420 * 343.53461 * 20 18 17 22 22 Si 1.86800 * 119.99830 * 163.52910 * 20 18 17 23 23 H 1.48503 * 109.47012 * 94.41122 * 22 20 18 24 24 H 1.48500 * 109.47529 * 214.41052 * 22 20 18 25 25 H 1.48502 * 109.47563 * 334.41292 * 22 20 18 26 26 C 1.46923 * 118.73624 * 53.86497 * 17 16 15 27 27 C 1.38844 * 120.40833 * 180.02562 * 3 2 1 28 28 C 1.50705 * 120.87526 * 359.97438 * 27 3 2 29 29 H 1.09000 * 109.47064 * 300.00095 * 1 2 3 30 30 H 1.08992 * 109.47216 * 60.00672 * 1 2 3 31 31 H 1.09000 * 109.46963 * 180.02562 * 1 2 3 32 32 H 1.08001 * 119.50412 * 359.96159 * 4 3 2 33 33 H 1.08000 * 119.65561 * 180.31495 * 6 5 4 34 34 H 0.97001 * 119.99901 * 0.02562 * 10 8 7 35 35 H 1.09004 * 109.46855 * 60.00148 * 11 10 8 36 36 H 1.09001 * 109.46892 * 300.00158 * 11 10 8 37 37 H 1.09004 * 109.45942 * 58.66951 * 14 12 11 38 38 H 1.08996 * 109.44998 * 298.69492 * 14 12 11 39 39 H 1.09006 * 109.50097 * 301.41503 * 15 14 12 40 40 H 1.08999 * 109.52434 * 181.33765 * 15 14 12 41 41 H 1.09001 * 109.58245 * 185.57759 * 16 15 14 42 42 H 1.08998 * 109.70288 * 65.22346 * 16 15 14 43 43 H 0.96992 * 119.99775 * 179.97438 * 21 20 18 44 44 H 1.08999 * 109.59448 * 65.92047 * 26 17 16 45 45 H 1.09003 * 109.58596 * 186.35011 * 26 17 16 46 46 H 1.08999 * 109.46879 * 263.23746 * 28 27 3 47 47 H 1.08994 * 109.47355 * 23.24336 * 28 27 3 48 48 H 1.09000 * 109.46629 * 143.24677 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2981 2.3809 0.0005 5 7 1.8846 3.5621 0.0010 6 6 3.1952 3.6892 0.0068 7 6 4.0198 2.5637 0.0004 8 6 5.4911 2.7104 0.0004 9 8 6.2000 1.7268 0.0862 10 7 6.0462 3.9349 -0.0948 11 6 7.5040 4.0802 -0.0953 12 6 7.8687 5.5615 -0.2122 13 1 7.3885 5.9859 -1.0939 14 6 9.3871 5.7052 -0.3383 15 6 9.7505 7.1843 -0.4882 16 6 9.2945 7.9471 0.7597 17 7 7.8624 7.6960 0.9704 18 6 6.9832 8.7377 1.1012 19 1 5.9428 8.6015 0.8455 20 6 7.4293 9.9686 1.5624 21 7 8.5912 10.0606 2.1738 22 14 6.3805 11.4945 1.3152 23 1 5.5508 11.7261 2.5248 24 1 7.2607 12.6684 1.0864 25 1 5.4961 11.3020 0.1379 26 6 7.3923 6.3059 1.0444 27 6 3.4320 1.2936 -0.0005 28 6 4.2810 0.0484 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2196 2.3226 0.0003 33 1 3.6365 4.6749 0.0122 34 1 5.4804 4.7199 -0.1629 35 1 7.9232 3.5346 -0.9407 36 1 7.9095 3.6787 0.8334 37 1 9.7324 5.1559 -1.2142 38 1 9.8652 5.3026 0.5547 39 1 9.2526 7.5940 -1.3671 40 1 10.8299 7.2845 -0.6018 41 1 9.4611 9.0147 0.6165 42 1 9.8575 7.6025 1.6271 43 1 8.9030 10.9208 2.4957 44 1 7.8035 5.8278 1.9335 45 1 6.3033 6.2903 1.0892 46 1 4.5860 -0.1834 1.0199 47 1 3.7053 -0.7838 -0.4057 48 1 5.1657 0.2119 -0.6159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602893985.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:55 Heat of formation + Delta-G solvation = -21.181591 kcal Electronic energy + Delta-G solvation = -28652.690394 eV Core-core repulsion = 24708.462730 eV Total energy + Delta-G solvation = -3944.227664 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.27300 -39.67639 -38.27354 -37.73521 -35.08442 -33.82091 -33.12341 -31.38619 -30.46591 -30.01599 -28.10062 -27.94989 -25.68260 -25.28631 -23.87616 -22.53819 -22.12036 -20.99629 -20.71032 -19.19367 -18.43244 -17.69734 -16.88786 -16.58502 -16.40494 -16.35838 -15.67270 -15.43967 -14.85007 -14.56434 -14.40983 -14.02287 -13.83969 -13.56351 -13.44826 -13.20880 -12.95971 -12.92834 -12.78488 -12.46344 -12.35629 -12.26608 -12.18008 -12.01895 -11.83546 -11.32503 -11.01787 -10.71252 -10.50734 -10.28163 -10.22383 -10.17773 -9.92827 -9.76117 -9.65219 -9.45783 -9.44313 -8.97420 -8.77588 -8.47470 -6.71617 -5.79605 -3.21896 0.35300 0.93291 2.64820 2.72657 3.21300 3.36281 3.43818 3.45560 3.56409 4.04952 4.19351 4.46659 4.46839 4.48196 4.66161 4.70412 4.86452 4.94487 5.07160 5.09591 5.27101 5.33407 5.41965 5.44303 5.49803 5.60045 5.63964 5.80792 5.88407 5.90702 5.97516 5.97899 6.20670 6.24034 6.31669 6.35152 6.45814 6.56868 6.68798 6.74864 6.77887 6.84708 6.93278 7.40968 7.45700 7.56327 7.69007 7.77759 8.12854 8.42465 9.19268 9.83002 10.38067 11.27944 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014798 B = 0.002689 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.632072 B =10408.745955 C =12053.988839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.063 3.937 4 C 0.040 3.960 5 N -0.455 5.455 6 C 0.105 3.895 7 C -0.154 4.154 8 C 0.562 3.438 9 O -0.531 6.531 10 N -0.715 5.715 11 C 0.128 3.872 12 C -0.119 4.119 13 H 0.074 0.926 14 C -0.099 4.099 15 C -0.141 4.141 16 C 0.165 3.835 17 N -0.592 5.592 18 C -0.251 4.251 19 H 0.066 0.934 20 C 0.000 4.000 21 N -0.904 5.904 22 Si 0.902 3.098 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.153 3.847 27 C -0.012 4.012 28 C -0.113 4.113 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.162 0.838 33 H 0.165 0.835 34 H 0.403 0.597 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.047 0.953 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.049 0.951 41 H 0.093 0.907 42 H 0.016 0.984 43 H 0.253 0.747 44 H 0.020 0.980 45 H 0.050 0.950 46 H 0.080 0.920 47 H 0.066 0.934 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.625 -18.541 -6.316 22.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.015 3.985 4 C -0.117 4.117 5 N -0.164 5.164 6 C -0.054 4.054 7 C -0.159 4.159 8 C 0.348 3.652 9 O -0.410 6.410 10 N -0.366 5.366 11 C 0.004 3.996 12 C -0.139 4.139 13 H 0.093 0.907 14 C -0.138 4.138 15 C -0.181 4.181 16 C 0.039 3.961 17 N -0.314 5.314 18 C -0.380 4.380 19 H 0.084 0.916 20 C -0.198 4.198 21 N -0.548 5.548 22 Si 0.732 3.268 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.204 1.204 26 C 0.026 3.974 27 C -0.021 4.021 28 C -0.169 4.169 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.122 0.878 32 H 0.179 0.821 33 H 0.182 0.818 34 H 0.239 0.761 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.111 0.889 42 H 0.034 0.966 43 H 0.064 0.936 44 H 0.038 0.962 45 H 0.068 0.932 46 H 0.098 0.902 47 H 0.085 0.915 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.471 -18.527 -6.178 22.649 hybrid contribution -0.628 0.716 -0.034 0.953 sum -12.099 -17.810 -6.212 22.410 Atomic orbital electron populations 1.23150 0.77920 1.04502 1.01641 1.86091 1.21556 1.25526 1.88663 1.19762 0.92340 0.86056 1.00305 1.23103 1.00739 0.87090 1.00745 1.67562 1.11916 1.25876 1.11019 1.22941 0.88728 0.98307 0.95460 1.20763 0.94930 0.93772 1.06421 1.17879 0.86621 0.83639 0.77062 1.90728 1.63095 1.37359 1.49792 1.46009 1.08947 1.07992 1.73661 1.21530 0.78403 0.97575 1.02084 1.22054 0.97571 0.92459 1.01863 0.90741 1.21341 0.94173 0.97741 1.00500 1.22170 0.99112 0.95037 1.01742 1.20891 0.83310 1.00555 0.91300 1.44083 1.04290 0.99643 1.83418 1.19193 0.91859 0.89722 1.37263 0.91582 1.25001 0.97566 0.99039 0.98241 1.70020 1.20971 1.23952 1.39900 0.86284 0.79520 0.83009 0.77983 1.21493 1.21586 1.20426 1.20989 0.96990 0.86554 0.92849 1.19840 0.90769 0.95919 0.95604 1.20919 0.99493 0.92456 1.04036 0.92293 0.92333 0.87768 0.82117 0.81840 0.76107 0.91659 0.91248 0.93430 0.92461 0.92760 0.93187 0.88859 0.96567 0.93638 0.96247 0.93193 0.90190 0.91526 0.88295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.82 101.05 0.99 1.10 16 2 O -0.31 -2.78 9.56 -19.48 -0.19 -2.97 16 3 C 0.06 0.67 6.68 -39.13 -0.26 0.41 16 4 C 0.04 0.41 10.21 -17.30 -0.18 0.23 16 5 N -0.45 -5.51 10.34 -12.79 -0.13 -5.64 16 6 C 0.11 1.24 10.70 -17.14 -0.18 1.05 16 7 C -0.15 -1.91 5.89 -104.84 -0.62 -2.53 16 8 C 0.56 7.72 7.74 -12.33 -0.10 7.62 16 9 O -0.53 -8.45 13.48 5.32 0.07 -8.38 16 10 N -0.71 -9.19 5.29 -61.24 -0.32 -9.51 16 11 C 0.13 1.76 5.06 -4.04 -0.02 1.74 16 12 C -0.12 -1.87 2.39 -90.27 -0.22 -2.08 16 13 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 14 C -0.10 -1.58 5.16 -26.69 -0.14 -1.72 16 15 C -0.14 -2.61 6.08 -26.61 -0.16 -2.77 16 16 C 0.17 3.85 5.33 -3.71 -0.02 3.83 16 17 N -0.59 -14.25 3.00 -172.06 -0.52 -14.77 16 18 C -0.25 -6.66 9.62 -15.06 -0.14 -6.80 16 19 H 0.07 1.70 7.87 -52.49 -0.41 1.29 16 20 C 0.00 -0.01 4.96 -17.43 -0.09 -0.10 16 21 N -0.90 -25.83 10.97 55.49 0.61 -25.22 16 22 Si 0.90 21.33 29.58 -169.99 -5.03 16.31 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 26 C 0.15 2.98 5.63 -3.49 -0.02 2.96 16 27 C -0.01 -0.15 5.97 -103.75 -0.62 -0.77 16 28 C -0.11 -1.28 8.70 36.01 0.31 -0.97 16 29 H 0.06 0.23 7.67 -51.93 -0.40 -0.16 16 30 H 0.06 0.22 7.67 -51.93 -0.40 -0.17 16 31 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.16 1.13 6.30 -52.49 -0.33 0.80 16 33 H 0.16 1.65 6.45 -52.49 -0.34 1.31 16 34 H 0.40 4.66 5.81 -40.82 -0.24 4.43 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.09 2.46 5.83 -51.93 -0.30 2.15 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.05 0.92 7.15 -51.93 -0.37 0.55 16 46 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.07 0.67 7.43 -51.93 -0.39 0.28 16 48 H 0.10 1.25 5.95 -51.93 -0.31 0.94 16 LS Contribution 379.49 15.07 5.72 5.72 Total: -1.00 -31.76 379.49 -8.51 -40.27 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -7.27 Total: 2.99 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -1.45 Total: 1.20 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.36 Total: -55.14 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -0.11 Total: -11.35 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.76 -8.51 -40.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602893985.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.093 kcal (2) G-P(sol) polarization free energy of solvation -31.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds