Wall clock time and date at job start Tue Mar 31 2020 17:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35918 * 116.99999 * 2 1 4 4 C 1.38852 * 120.40442 * 0.02562 * 3 2 1 5 5 N 1.31889 * 120.99853 * 179.97438 * 4 3 2 6 6 C 1.31680 * 121.94246 * 359.70460 * 5 4 3 7 7 C 1.39522 * 120.68906 * 0.58666 * 6 5 4 8 8 C 1.47857 * 120.53252 * 179.70691 * 7 6 5 9 9 O 1.21550 * 120.00147 * 175.02325 * 8 7 6 10 10 N 1.34774 * 119.99826 * 355.01497 * 8 7 6 11 11 C 1.46504 * 119.99997 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.46850 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.50004 * 305.06577 * 12 11 10 14 14 C 1.53044 * 109.49465 * 184.99818 * 12 11 10 15 15 C 1.53040 * 109.53586 * 178.68448 * 14 12 11 16 16 C 1.53194 * 109.31406 * 61.36644 * 15 14 12 17 17 N 1.46922 * 108.77382 * 305.36114 * 16 15 14 18 18 C 1.36937 * 120.63193 * 233.58297 * 17 16 15 19 19 H 1.08002 * 119.99796 * 154.37728 * 18 17 16 20 20 C 1.38808 * 119.99906 * 334.37715 * 18 17 16 21 21 N 1.31625 * 120.00420 * 343.53461 * 20 18 17 22 22 Si 1.86800 * 119.99830 * 163.52910 * 20 18 17 23 23 H 1.48503 * 109.47012 * 94.41122 * 22 20 18 24 24 H 1.48500 * 109.47529 * 214.41052 * 22 20 18 25 25 H 1.48502 * 109.47563 * 334.41292 * 22 20 18 26 26 C 1.46923 * 118.73624 * 53.86497 * 17 16 15 27 27 C 1.38844 * 120.40833 * 180.02562 * 3 2 1 28 28 C 1.50705 * 120.87526 * 359.97438 * 27 3 2 29 29 H 1.09000 * 109.47064 * 300.00095 * 1 2 3 30 30 H 1.08992 * 109.47216 * 60.00672 * 1 2 3 31 31 H 1.09000 * 109.46963 * 180.02562 * 1 2 3 32 32 H 1.08001 * 119.50412 * 359.96159 * 4 3 2 33 33 H 1.08000 * 119.65561 * 180.31495 * 6 5 4 34 34 H 0.97001 * 119.99901 * 0.02562 * 10 8 7 35 35 H 1.09004 * 109.46855 * 60.00148 * 11 10 8 36 36 H 1.09001 * 109.46892 * 300.00158 * 11 10 8 37 37 H 1.09004 * 109.45942 * 58.66951 * 14 12 11 38 38 H 1.08996 * 109.44998 * 298.69492 * 14 12 11 39 39 H 1.09006 * 109.50097 * 301.41503 * 15 14 12 40 40 H 1.08999 * 109.52434 * 181.33765 * 15 14 12 41 41 H 1.09001 * 109.58245 * 185.57759 * 16 15 14 42 42 H 1.08998 * 109.70288 * 65.22346 * 16 15 14 43 43 H 0.96992 * 119.99775 * 179.97438 * 21 20 18 44 44 H 1.08999 * 109.59448 * 65.92047 * 26 17 16 45 45 H 1.09003 * 109.58596 * 186.35011 * 26 17 16 46 46 H 1.08999 * 109.46879 * 263.23746 * 28 27 3 47 47 H 1.08994 * 109.47355 * 23.24336 * 28 27 3 48 48 H 1.09000 * 109.46629 * 143.24677 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2981 2.3809 0.0005 5 7 1.8846 3.5621 0.0010 6 6 3.1952 3.6892 0.0068 7 6 4.0198 2.5637 0.0004 8 6 5.4911 2.7104 0.0004 9 8 6.2000 1.7268 0.0862 10 7 6.0462 3.9349 -0.0948 11 6 7.5040 4.0802 -0.0953 12 6 7.8687 5.5615 -0.2122 13 1 7.3885 5.9859 -1.0939 14 6 9.3871 5.7052 -0.3383 15 6 9.7505 7.1843 -0.4882 16 6 9.2945 7.9471 0.7597 17 7 7.8624 7.6960 0.9704 18 6 6.9832 8.7377 1.1012 19 1 5.9428 8.6015 0.8455 20 6 7.4293 9.9686 1.5624 21 7 8.5912 10.0606 2.1738 22 14 6.3805 11.4945 1.3152 23 1 5.5508 11.7261 2.5248 24 1 7.2607 12.6684 1.0864 25 1 5.4961 11.3020 0.1379 26 6 7.3923 6.3059 1.0444 27 6 3.4320 1.2936 -0.0005 28 6 4.2810 0.0484 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2196 2.3226 0.0003 33 1 3.6365 4.6749 0.0122 34 1 5.4804 4.7199 -0.1629 35 1 7.9232 3.5346 -0.9407 36 1 7.9095 3.6787 0.8334 37 1 9.7324 5.1559 -1.2142 38 1 9.8652 5.3026 0.5547 39 1 9.2526 7.5940 -1.3671 40 1 10.8299 7.2845 -0.6018 41 1 9.4611 9.0147 0.6165 42 1 9.8575 7.6025 1.6271 43 1 8.9030 10.9208 2.4957 44 1 7.8035 5.8278 1.9335 45 1 6.3033 6.2903 1.0892 46 1 4.5860 -0.1834 1.0199 47 1 3.7053 -0.7838 -0.4057 48 1 5.1657 0.2119 -0.6159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602893985.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:54 Heat of formation + Delta-G solvation = -41.499135 kcal Electronic energy + Delta-G solvation = -28653.571429 eV Core-core repulsion = 24708.462730 eV Total energy + Delta-G solvation = -3945.108699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.12438 -40.66848 -39.39429 -38.88103 -36.41657 -34.84092 -34.63052 -32.55070 -32.27013 -31.22956 -28.95173 -28.49104 -27.25789 -26.83570 -24.82682 -23.77933 -23.43770 -22.42047 -21.76782 -20.65635 -19.34535 -18.63717 -18.52091 -17.48629 -17.36856 -17.03827 -16.80613 -16.73206 -16.48165 -15.78837 -15.49343 -15.16857 -15.04466 -14.99179 -14.62531 -14.48809 -14.07088 -13.91525 -13.87298 -13.77582 -13.71453 -13.48785 -13.12564 -13.00910 -12.85844 -12.72937 -12.46817 -12.37194 -12.23287 -11.94319 -11.79794 -11.55548 -11.34243 -11.12999 -11.06215 -10.68957 -10.49975 -10.44068 -10.04979 -9.53903 -8.67474 -7.83546 -5.28205 -0.52483 0.08151 1.48201 1.50110 1.59458 1.73512 1.88415 2.32895 2.53177 2.67065 3.26266 3.30747 3.41114 3.60316 3.63014 3.64758 3.97890 4.02272 4.03600 4.07838 4.12764 4.36071 4.40425 4.44401 4.54445 4.58974 4.62054 4.66081 4.73817 4.77529 4.79233 4.90731 4.92938 5.02618 5.04915 5.13259 5.13532 5.23888 5.34367 5.37719 5.43657 5.49959 5.61365 5.69969 5.84058 6.12816 6.40411 6.43608 6.72057 7.08503 7.17419 7.89654 8.39801 9.21933 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014798 B = 0.002689 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.632072 B =10408.745955 C =12053.988839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.318 6.318 3 C 0.068 3.932 4 C 0.044 3.956 5 N -0.472 5.472 6 C 0.100 3.900 7 C -0.163 4.163 8 C 0.563 3.437 9 O -0.557 6.557 10 N -0.710 5.710 11 C 0.138 3.862 12 C -0.101 4.101 13 H 0.078 0.922 14 C -0.097 4.097 15 C -0.130 4.130 16 C 0.168 3.832 17 N -0.610 5.610 18 C -0.256 4.256 19 H 0.073 0.927 20 C -0.057 4.057 21 N -0.938 5.938 22 Si 0.965 3.035 23 H -0.289 1.289 24 H -0.295 1.295 25 H -0.267 1.267 26 C 0.150 3.850 27 C -0.031 4.031 28 C -0.105 4.105 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.124 0.876 32 H 0.193 0.807 33 H 0.175 0.825 34 H 0.409 0.591 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.068 0.932 41 H 0.058 0.942 42 H -0.009 1.009 43 H 0.248 0.752 44 H 0.007 0.993 45 H 0.057 0.943 46 H 0.074 0.926 47 H 0.077 0.923 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.570 -19.857 -7.696 25.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.230 6.230 3 C 0.020 3.980 4 C -0.113 4.113 5 N -0.182 5.182 6 C -0.059 4.059 7 C -0.169 4.169 8 C 0.350 3.650 9 O -0.437 6.437 10 N -0.362 5.362 11 C 0.015 3.985 12 C -0.122 4.122 13 H 0.096 0.904 14 C -0.135 4.135 15 C -0.169 4.169 16 C 0.043 3.957 17 N -0.333 5.333 18 C -0.386 4.386 19 H 0.091 0.909 20 C -0.251 4.251 21 N -0.585 5.585 22 Si 0.794 3.206 23 H -0.216 1.216 24 H -0.222 1.222 25 H -0.191 1.191 26 C 0.025 3.975 27 C -0.040 4.040 28 C -0.161 4.161 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.142 0.858 32 H 0.210 0.790 33 H 0.192 0.808 34 H 0.247 0.753 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.009 0.991 43 H 0.057 0.943 44 H 0.025 0.975 45 H 0.076 0.924 46 H 0.093 0.907 47 H 0.096 0.904 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.441 -19.864 -7.576 25.153 hybrid contribution -0.125 1.021 0.433 1.116 sum -13.567 -18.843 -7.143 24.293 Atomic orbital electron populations 1.23508 0.75605 1.06359 1.02818 1.86090 1.23919 1.24718 1.88258 1.19759 0.91905 0.86916 0.99451 1.23589 1.02155 0.86332 0.99201 1.67612 1.11960 1.26894 1.11707 1.23091 0.88827 0.98564 0.95415 1.20658 0.94084 0.94380 1.07733 1.18062 0.87154 0.83330 0.76408 1.90718 1.63782 1.38123 1.51062 1.45939 1.08683 1.08174 1.73376 1.21350 0.78984 0.95917 1.02299 1.21810 0.97584 0.93132 0.99631 0.90368 1.21337 0.94105 0.96037 1.02008 1.21995 1.00127 0.96098 0.98679 1.20721 0.83188 0.99143 0.92691 1.44355 1.04270 1.01022 1.83651 1.19585 0.92534 0.90571 1.35908 0.90922 1.25753 0.98852 1.01785 0.98730 1.70189 1.22748 1.24015 1.41532 0.85288 0.77938 0.79392 0.78006 1.21575 1.22205 1.19136 1.21138 0.97484 0.84572 0.94327 1.20027 0.91827 0.95873 0.96280 1.20806 0.99020 0.92835 1.03437 0.91171 0.91004 0.85751 0.79047 0.80812 0.75322 0.90345 0.91969 0.90069 0.92596 0.92885 0.91384 0.92378 0.99102 0.94293 0.97464 0.92435 0.90725 0.90374 0.89763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.82 113.37 1.11 1.19 16 2 O -0.32 -5.08 9.56 -92.62 -0.89 -5.97 16 3 C 0.07 1.32 6.68 22.56 0.15 1.47 16 4 C 0.04 0.80 10.21 84.83 0.87 1.67 16 5 N -0.47 -10.64 10.34 -194.39 -2.01 -12.65 16 6 C 0.10 2.24 10.70 85.03 0.91 3.15 16 7 C -0.16 -3.95 5.89 -20.01 -0.12 -4.07 16 8 C 0.56 15.06 7.74 86.79 0.67 15.74 16 9 O -0.56 -17.49 13.48 -3.87 -0.05 -17.55 16 10 N -0.71 -17.33 5.29 -465.96 -2.46 -19.79 16 11 C 0.14 3.56 5.06 86.38 0.44 3.99 16 12 C -0.10 -3.00 2.39 -10.57 -0.03 -3.03 16 13 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 14 C -0.10 -2.86 5.16 30.62 0.16 -2.71 16 15 C -0.13 -4.65 6.08 30.67 0.19 -4.46 16 16 C 0.17 8.01 5.33 86.36 0.46 8.47 16 17 N -0.61 -29.60 3.00 -698.26 -2.09 -31.69 16 18 C -0.26 -13.65 9.62 84.03 0.81 -12.84 16 19 H 0.07 3.70 7.87 -2.91 -0.02 3.67 16 20 C -0.06 -3.12 4.96 84.86 0.42 -2.70 16 21 N -0.94 -55.34 10.97 21.65 0.24 -55.10 16 22 Si 0.97 44.38 29.58 68.60 2.03 46.41 16 23 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 24 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 C 0.15 5.79 5.63 86.51 0.49 6.27 16 27 C -0.03 -0.72 5.97 -19.30 -0.12 -0.84 16 28 C -0.10 -2.34 8.70 71.24 0.62 -1.72 16 29 H 0.07 0.34 7.67 -2.39 -0.02 0.32 16 30 H 0.07 0.32 7.67 -2.39 -0.02 0.30 16 31 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.19 2.07 6.30 -2.91 -0.02 2.05 16 33 H 0.17 3.31 6.45 -2.91 -0.02 3.29 16 34 H 0.41 8.89 5.81 -92.71 -0.54 8.36 16 35 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.06 3.17 5.83 -2.39 -0.01 3.16 16 42 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 43 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 44 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.06 2.08 7.15 -2.39 -0.02 2.07 16 46 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.08 1.50 7.43 -2.39 -0.02 1.48 16 48 H 0.08 2.14 5.95 -2.39 -0.01 2.12 16 Total: -1.00 -69.79 379.49 2.23 -67.55 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.44 Total: 19.19 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 7.03 Total: 9.59 kcal Atomic # 7 Polarization: -112.90 SS G_CDS: -6.33 Total: -119.23 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.94 Total: -23.51 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -69.79 2.23 -67.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602893985.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.054 kcal (2) G-P(sol) polarization free energy of solvation -69.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds