Wall clock time and date at job start Tue Mar 31 2020 17:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35677 * 117.00036 * 2 1 4 4 N 1.32271 * 119.68566 * 0.24501 * 3 2 1 5 5 C 1.31937 * 121.65045 * 180.28426 * 4 3 2 6 6 C 1.50701 * 119.58625 * 179.75278 * 5 4 3 7 7 C 1.38091 * 120.83075 * 359.73317 * 5 4 3 8 8 C 1.38791 * 119.28671 * 359.97438 * 7 5 4 9 9 C 1.50697 * 120.75489 * 179.97438 * 8 7 5 10 10 C 1.38416 * 118.48532 * 0.02562 * 8 7 5 11 11 C 1.50699 * 120.44265 * 179.97438 * 10 8 7 12 12 N 1.46497 * 109.47293 * 89.99725 * 11 10 8 13 13 C 1.34780 * 119.99719 * 179.97438 * 12 11 10 14 14 O 1.21578 * 120.00108 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99704 * 179.97438 * 13 12 11 16 16 C 1.46498 * 119.99966 * 180.02562 * 15 13 12 17 17 C 1.53006 * 109.46847 * 184.79711 * 16 15 13 18 18 C 1.50694 * 115.55031 * 294.81434 * 17 16 15 19 19 H 1.08008 * 119.99906 * 95.20931 * 18 17 16 20 20 C 1.37882 * 120.00284 * 274.93190 * 18 17 16 21 21 N 1.31518 * 119.99808 * 355.41947 * 20 18 17 22 22 Si 1.86800 * 120.00242 * 175.41794 * 20 18 17 23 23 H 1.48502 * 109.47002 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47091 * 119.99801 * 22 20 18 25 25 H 1.48497 * 109.47138 * 240.00628 * 22 20 18 26 26 C 1.53003 * 117.49932 * 80.48760 * 17 16 15 27 27 C 1.52998 * 117.49502 * 149.14904 * 17 16 15 28 28 H 1.09000 * 109.47033 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47056 * 299.99936 * 1 2 3 30 30 H 1.09001 * 109.47094 * 59.99558 * 1 2 3 31 31 H 1.09000 * 109.47146 * 269.98004 * 6 5 4 32 32 H 1.08998 * 109.46874 * 29.97839 * 6 5 4 33 33 H 1.08995 * 109.47257 * 149.98121 * 6 5 4 34 34 H 1.08002 * 120.35676 * 180.02562 * 7 5 4 35 35 H 1.09001 * 109.47067 * 270.02083 * 9 8 7 36 36 H 1.08998 * 109.47246 * 30.02076 * 9 8 7 37 37 H 1.08996 * 109.47308 * 150.02515 * 9 8 7 38 38 H 1.08996 * 109.47074 * 329.99604 * 11 10 8 39 39 H 1.09003 * 109.46911 * 210.00035 * 11 10 8 40 40 H 0.96996 * 119.99936 * 0.02562 * 12 11 10 41 41 H 0.97009 * 119.99753 * 0.02562 * 15 13 12 42 42 H 1.08993 * 109.47219 * 64.80231 * 16 15 13 43 43 H 1.09000 * 109.47241 * 304.79395 * 16 15 13 44 44 H 0.97001 * 119.99858 * 184.99726 * 21 20 18 45 45 H 1.08997 * 117.49622 * 214.99831 * 26 17 16 46 46 H 1.09000 * 117.49928 * 0.02562 * 26 17 16 47 47 H 1.08996 * 117.50254 * 359.97148 * 27 17 16 48 48 H 1.09005 * 117.49689 * 144.97447 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 7 1.3185 2.3142 0.0049 5 6 1.8768 3.5096 -0.0005 6 6 1.0043 4.7384 -0.0001 7 6 3.2507 3.6491 -0.0060 8 6 4.0484 2.5133 -0.0053 9 6 5.5511 2.6271 -0.0118 10 6 3.4323 1.2739 0.0004 11 6 4.2558 0.0118 0.0008 12 7 4.5279 -0.3934 1.3821 13 6 5.2525 -1.5027 1.6286 14 8 5.6800 -2.1674 0.7047 15 7 5.5033 -1.8752 2.8994 16 6 6.2914 -3.0807 3.1674 17 6 6.3270 -3.3420 4.6746 18 6 7.0413 -2.3015 5.4979 19 1 6.4816 -1.5037 5.9637 20 6 8.4087 -2.3709 5.6614 21 7 9.0779 -3.3934 5.1752 22 14 9.3105 -1.0129 6.5734 23 1 8.3365 0.0159 7.0186 24 1 10.0008 -1.5853 7.7571 25 1 10.3110 -0.3898 5.6701 26 6 5.1110 -4.0267 5.3018 27 6 6.4235 -4.7972 5.1370 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.7901 5.0321 -1.0277 32 1 0.0703 4.5205 0.5177 33 1 1.5215 5.5511 0.5097 34 1 3.6996 4.6314 -0.0099 35 1 5.9091 2.6513 -1.0410 36 1 5.8483 3.5435 0.4980 37 1 5.9826 1.7686 0.5029 38 1 5.1977 0.1925 -0.5171 39 1 3.7071 -0.7802 -0.5088 40 1 4.1859 0.1363 2.1192 41 1 5.1619 -1.3450 3.6365 42 1 7.3075 -2.9398 2.7990 43 1 5.8362 -3.9322 2.6617 44 1 10.0278 -3.4796 5.3521 45 1 4.8277 -3.7245 6.3100 46 1 4.2858 -4.2914 4.6407 47 1 6.4610 -5.5684 4.3677 48 1 7.0038 -5.0020 6.0367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619528610.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:09 Heat of formation + Delta-G solvation = -38.820771 kcal Electronic energy + Delta-G solvation = -28568.830146 eV Core-core repulsion = 24623.837590 eV Total energy + Delta-G solvation = -3944.992556 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -41.99064 -40.83300 -39.13807 -38.56675 -36.67942 -34.96560 -34.42380 -33.92326 -32.94172 -30.27236 -28.79445 -28.25253 -27.84335 -26.96666 -25.41928 -23.43559 -22.93381 -21.82459 -21.73501 -21.22420 -19.35269 -18.90366 -18.24513 -18.09633 -17.34111 -16.93601 -16.69187 -16.37364 -16.19047 -15.71519 -15.42440 -15.26990 -15.08852 -14.98027 -14.67376 -14.39472 -14.12774 -14.12338 -13.71257 -13.53691 -13.43422 -13.23204 -13.16907 -13.11190 -12.90210 -12.84350 -12.72674 -12.38428 -12.31549 -12.01318 -11.91184 -11.48655 -11.28636 -10.92567 -10.68197 -10.46728 -10.43245 -10.27630 -10.02473 -9.58736 -9.40836 -8.07336 -6.21599 -0.04360 0.24876 1.42286 1.45771 1.55070 1.87652 2.09193 2.25600 2.43871 2.67159 3.15191 3.20566 3.38792 3.64955 3.66603 3.72064 3.87041 4.04991 4.26041 4.38045 4.40020 4.40739 4.52959 4.56830 4.57595 4.67845 4.69818 4.71971 4.74289 4.76226 4.80193 4.82976 5.00152 5.02575 5.04618 5.05306 5.24316 5.30180 5.33548 5.47516 5.55694 5.57525 5.63992 5.73953 5.80479 6.12065 6.22585 6.38932 6.83333 6.85805 7.21813 7.47898 7.68083 8.99922 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013550 B = 0.002830 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.875227 B = 9890.679348 C =10855.559624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.320 6.320 3 C 0.331 3.669 4 N -0.560 5.560 5 C 0.166 3.834 6 C -0.102 4.102 7 C -0.210 4.210 8 C 0.016 3.984 9 C -0.122 4.122 10 C -0.201 4.201 11 C 0.204 3.796 12 N -0.727 5.727 13 C 0.699 3.301 14 O -0.643 6.643 15 N -0.716 5.716 16 C 0.200 3.800 17 C 0.004 3.996 18 C -0.503 4.503 19 H 0.063 0.937 20 C 0.024 3.976 21 N -0.908 5.908 22 Si 0.951 3.049 23 H -0.261 1.261 24 H -0.284 1.284 25 H -0.288 1.288 26 C -0.179 4.179 27 C -0.152 4.152 28 H 0.113 0.887 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.169 0.831 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.404 0.596 41 H 0.406 0.594 42 H 0.024 0.976 43 H 0.034 0.966 44 H 0.259 0.741 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.068 0.932 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.322 17.892 -10.300 26.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.227 6.227 3 C 0.152 3.848 4 N -0.286 5.286 5 C 0.030 3.970 6 C -0.159 4.159 7 C -0.230 4.230 8 C 0.008 3.992 9 C -0.179 4.179 10 C -0.205 4.205 11 C 0.080 3.920 12 N -0.383 5.383 13 C 0.399 3.601 14 O -0.526 6.526 15 N -0.369 5.369 16 C 0.075 3.925 17 C 0.004 3.996 18 C -0.540 4.540 19 H 0.081 0.919 20 C -0.177 4.177 21 N -0.545 5.545 22 Si 0.777 3.223 23 H -0.185 1.185 24 H -0.210 1.210 25 H -0.214 1.214 26 C -0.216 4.216 27 C -0.190 4.190 28 H 0.131 0.869 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.093 0.907 33 H 0.119 0.881 34 H 0.186 0.814 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.239 0.761 41 H 0.241 0.759 42 H 0.043 0.957 43 H 0.052 0.948 44 H 0.068 0.932 45 H 0.103 0.897 46 H 0.103 0.897 47 H 0.087 0.913 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.547 16.876 -11.197 26.153 hybrid contribution 1.170 0.499 1.066 1.659 sum -15.377 17.375 -10.131 25.318 Atomic orbital electron populations 1.23018 0.75898 1.04261 1.02384 1.86301 1.24332 1.24669 1.87360 1.19750 0.88931 0.84983 0.91140 1.67235 1.40895 0.98724 1.21742 1.21605 0.92984 0.92214 0.90212 1.20852 0.98847 0.91854 1.04320 1.22015 0.93406 1.00226 1.07345 1.20321 0.97825 0.90922 0.90123 1.20967 0.88543 1.04196 1.04164 1.19643 0.90919 0.95899 1.14024 1.19554 0.97833 0.92390 0.82247 1.44960 1.57477 1.26873 1.08966 1.16129 0.79267 0.81371 0.83353 1.90837 1.59615 1.57356 1.44795 1.44925 1.57040 1.29505 1.05413 1.20408 0.92195 0.84390 0.95498 1.19073 0.97367 0.93022 0.90178 1.20681 0.91644 1.10532 1.31188 0.91885 1.25716 0.98473 0.97408 0.96110 1.70128 1.08664 1.30535 1.45194 0.85618 0.78678 0.80006 0.77985 1.18515 1.21032 1.21424 1.22988 0.91014 1.06081 1.01494 1.22388 0.99534 0.95407 1.01704 0.86892 0.92290 0.92080 0.88862 0.90724 0.88066 0.81354 0.88785 0.88488 0.91975 0.90992 0.92374 0.76125 0.75927 0.95721 0.94816 0.93225 0.89670 0.89657 0.91300 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 10.38 113.37 1.18 1.89 16 2 O -0.32 -8.15 9.54 -89.95 -0.86 -9.01 16 3 C 0.33 8.19 7.47 84.78 0.63 8.82 16 4 N -0.56 -12.36 9.13 -296.98 -2.71 -15.07 16 5 C 0.17 2.80 6.78 42.51 0.29 3.09 16 6 C -0.10 -0.95 10.17 71.24 0.72 -0.22 16 7 C -0.21 -3.15 9.44 22.37 0.21 -2.94 16 8 C 0.02 0.30 5.91 -19.69 -0.12 0.18 16 9 C -0.12 -1.94 9.28 71.23 0.66 -1.28 16 10 C -0.20 -4.77 5.28 -19.67 -0.10 -4.87 16 11 C 0.20 5.75 4.84 85.63 0.41 6.16 16 12 N -0.73 -22.12 5.55 -482.31 -2.68 -24.80 16 13 C 0.70 27.80 8.57 179.05 1.53 29.33 16 14 O -0.64 -30.92 16.34 -3.96 -0.06 -30.99 16 15 N -0.72 -28.73 5.48 -478.54 -2.62 -31.35 16 16 C 0.20 9.46 5.50 86.38 0.48 9.93 16 17 C 0.00 0.21 1.47 -52.93 -0.08 0.13 16 18 C -0.50 -25.81 8.59 25.60 0.22 -25.59 16 19 H 0.06 3.12 7.82 -2.91 -0.02 3.10 16 20 C 0.02 1.25 5.43 84.66 0.46 1.71 16 21 N -0.91 -51.50 12.65 21.45 0.27 -51.23 16 22 Si 0.95 42.18 29.54 68.60 2.03 44.21 16 23 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 26 C -0.18 -7.32 9.96 30.62 0.30 -7.01 16 27 C -0.15 -7.10 9.14 30.62 0.28 -6.82 16 28 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 30 H 0.06 1.04 8.11 -2.39 -0.02 1.02 16 31 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 0.49 8.08 -2.39 -0.02 0.47 16 34 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 35 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.10 1.13 8.10 -2.39 -0.02 1.11 16 37 H 0.06 1.27 6.82 -2.39 -0.02 1.25 16 38 H 0.07 2.04 6.81 -2.39 -0.02 2.02 16 39 H 0.06 1.85 7.54 -2.39 -0.02 1.83 16 40 H 0.40 10.56 8.48 -92.71 -0.79 9.77 16 41 H 0.41 14.61 8.35 -92.70 -0.77 13.84 16 42 H 0.02 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.03 1.60 8.09 -2.39 -0.02 1.58 16 44 H 0.26 14.11 8.32 -92.71 -0.77 13.34 16 45 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 46 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 47 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 48 H 0.07 3.34 8.14 -2.38 -0.02 3.32 16 Total: -1.00 -69.69 403.70 -0.13 -69.82 By element: Atomic # 1 Polarization: 36.49 SS G_CDS: -0.58 Total: 35.91 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 7.08 Total: 12.51 kcal Atomic # 7 Polarization: -114.71 SS G_CDS: -7.74 Total: -122.45 kcal Atomic # 8 Polarization: -39.07 SS G_CDS: -0.92 Total: -39.99 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -69.69 -0.13 -69.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619528610.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.999 kcal (2) G-P(sol) polarization free energy of solvation -69.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds