Wall clock time and date at job start Tue Mar 31 2020 17:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38831 * 120.75211 * 2 1 4 4 C 1.38046 * 119.28836 * 180.02562 * 3 2 1 5 5 N 1.31965 * 120.83366 * 359.74360 * 4 3 2 6 6 C 1.32251 * 121.64816 * 0.51872 * 5 4 3 7 7 O 1.35676 * 119.68503 * 179.75389 * 6 5 4 8 8 C 1.42892 * 117.00150 * 359.72946 * 7 6 5 9 9 C 1.53120 * 109.52490 * 149.99600 * 8 7 6 10 10 C 1.53041 * 109.28182 * 177.55689 * 9 8 7 11 11 N 1.46849 * 109.52442 * 300.82868 * 10 9 8 12 12 C 1.46901 * 110.99649 * 185.83742 * 11 10 9 13 13 C 1.50701 * 109.46921 * 169.99608 * 12 11 10 14 14 O 1.21280 * 119.99781 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99795 * 179.97438 * 13 12 11 16 16 C 1.46497 * 119.99566 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.46835 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00280 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99788 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99711 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00219 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.46794 * 90.00022 * 21 19 17 23 23 H 1.48505 * 109.46876 * 210.00288 * 21 19 17 24 24 H 1.48501 * 109.46982 * 330.00118 * 21 19 17 25 25 C 1.46839 * 111.20047 * 61.73811 * 11 10 9 26 26 C 1.53034 * 109.52552 * 298.25821 * 25 11 10 27 27 C 1.38375 * 120.75907 * 180.02562 * 2 1 3 28 28 H 1.09009 * 109.47180 * 269.97733 * 1 2 3 29 29 H 1.09001 * 109.47689 * 29.98274 * 1 2 3 30 30 H 1.09003 * 109.47002 * 149.98374 * 1 2 3 31 31 H 1.07998 * 120.35712 * 0.04038 * 3 2 1 32 32 H 1.08001 * 119.58688 * 179.97438 * 4 3 2 33 33 H 1.09005 * 109.57463 * 29.83915 * 8 7 6 34 34 H 1.09005 * 109.50142 * 57.62472 * 9 8 7 35 35 H 1.08998 * 109.50777 * 297.50369 * 9 8 7 36 36 H 1.08991 * 109.46218 * 180.80508 * 10 9 8 37 37 H 1.09001 * 109.45364 * 60.83790 * 10 9 8 38 38 H 1.09002 * 109.47401 * 49.99636 * 12 11 10 39 39 H 1.09001 * 109.46874 * 289.99649 * 12 11 10 40 40 H 0.96995 * 120.00011 * 0.02562 * 15 13 12 41 41 H 1.09001 * 109.47487 * 300.00114 * 16 15 13 42 42 H 1.09002 * 109.47182 * 60.00342 * 16 15 13 43 43 H 0.97009 * 119.99937 * 179.97438 * 20 19 17 44 44 H 1.09006 * 109.46266 * 58.27078 * 25 11 10 45 45 H 1.09002 * 109.46276 * 178.24270 * 25 11 10 46 46 H 1.09006 * 109.50444 * 299.24199 * 26 25 11 47 47 H 1.09003 * 109.50687 * 179.12283 * 26 25 11 48 48 H 1.07999 * 120.44383 * 359.96049 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1931 0.0000 4 6 3.5969 1.1578 -0.0005 5 7 4.2441 0.0078 0.0040 6 6 3.6033 -1.1491 -0.0009 7 8 4.3089 -2.3080 -0.0010 8 6 5.7337 -2.2000 -0.0016 9 6 6.3387 -3.4074 0.7200 10 6 7.8654 -3.3173 0.6631 11 7 8.3036 -3.2918 -0.7383 12 6 9.7686 -3.3452 -0.8328 13 6 10.1717 -3.5644 -2.2682 14 8 9.3222 -3.6657 -3.1279 15 7 11.4762 -3.6468 -2.5968 16 6 11.8681 -3.8594 -3.9923 17 6 13.3710 -3.9142 -4.0892 18 1 13.9739 -3.8024 -3.2002 19 6 13.9762 -4.1072 -5.3129 20 7 15.2878 -4.1545 -5.3976 21 14 12.9334 -4.2999 -6.8508 22 1 12.6954 -2.9657 -7.4577 23 1 13.6435 -5.1674 -7.8248 24 1 11.6325 -4.9199 -6.4922 25 6 7.7735 -2.1154 -1.4391 26 6 6.2441 -2.1695 -1.4449 27 6 2.2147 -1.1891 -0.0005 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3633 -0.8899 -0.5141 31 1 1.6951 2.1387 0.0007 32 1 4.1539 2.0831 -0.0010 33 1 6.0308 -1.2840 0.5091 34 1 6.0100 -4.3251 0.2323 35 1 6.0129 -3.4106 1.7602 36 1 8.2992 -4.1829 1.1636 37 1 8.1943 -2.4063 1.1630 38 1 10.1425 -4.1661 -0.2210 39 1 10.1901 -2.4052 -0.4765 40 1 12.1556 -3.5654 -1.9092 41 1 11.4468 -4.7993 -4.3489 42 1 11.4939 -3.0383 -4.6038 43 1 15.7137 -4.2906 -6.2585 44 1 8.1028 -1.2099 -0.9292 45 1 8.1406 -2.1080 -2.4654 46 1 5.9138 -3.0678 -1.9667 47 1 5.8506 -1.2883 -1.9516 48 1 1.6944 -2.1355 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782514554.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:55 Heat of formation + Delta-G solvation = -37.092962 kcal Electronic energy + Delta-G solvation = -27871.540617 eV Core-core repulsion = 23926.622985 eV Total energy + Delta-G solvation = -3944.917633 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.01760 -39.70731 -38.68828 -37.27883 -34.27582 -34.17822 -32.97750 -32.32618 -30.96063 -30.56587 -28.66600 -28.26669 -26.52738 -23.80871 -23.71196 -23.25113 -22.04183 -21.55405 -19.98340 -19.82464 -18.21515 -17.30246 -17.20151 -16.27377 -16.13172 -16.02384 -15.81498 -15.28354 -15.04441 -14.82711 -14.49848 -14.41839 -14.19669 -13.80460 -13.73937 -13.42013 -13.29987 -13.01652 -12.89691 -12.74915 -12.60393 -12.39266 -12.26416 -12.07110 -11.97865 -11.54184 -11.33821 -11.28140 -10.99882 -10.76268 -10.67140 -10.38592 -9.95834 -9.89698 -9.84778 -9.49013 -9.14063 -8.77337 -8.75240 -8.29453 -8.09033 -6.21140 -4.23287 0.83916 0.94187 2.76817 3.24821 3.28412 3.33985 3.43219 3.45426 3.57577 3.99633 4.23379 4.31060 4.34266 4.54766 4.59142 4.70190 4.75534 4.80227 4.97533 5.06617 5.07676 5.10914 5.14249 5.19804 5.26536 5.34047 5.36630 5.43535 5.47808 5.49305 5.54099 5.57325 5.58691 5.73268 5.82486 5.95032 5.97971 6.08949 6.19381 6.29707 6.78934 6.97002 7.07913 7.08671 7.09578 7.25806 7.40823 7.59475 8.15460 8.53394 8.76262 8.97620 9.39306 10.90772 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022592 B = 0.001941 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.069623 B =14425.603832 C =15026.919130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.010 4.010 3 C -0.219 4.219 4 C 0.144 3.856 5 N -0.543 5.543 6 C 0.332 3.668 7 O -0.299 6.299 8 C 0.090 3.910 9 C -0.112 4.112 10 C 0.061 3.939 11 N -0.521 5.521 12 C 0.036 3.964 13 C 0.500 3.500 14 O -0.540 6.540 15 N -0.708 5.708 16 C 0.222 3.778 17 C -0.544 4.544 18 H 0.079 0.921 19 C 0.077 3.923 20 N -0.893 5.893 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.260 1.260 25 C 0.056 3.944 26 C -0.125 4.125 27 C -0.198 4.198 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.135 0.865 32 H 0.158 0.842 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.035 0.965 38 H 0.102 0.898 39 H 0.060 0.940 40 H 0.396 0.604 41 H 0.025 0.975 42 H 0.019 0.981 43 H 0.267 0.733 44 H 0.029 0.971 45 H 0.103 0.897 46 H 0.079 0.921 47 H 0.069 0.931 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.033 9.218 16.535 33.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.017 4.017 3 C -0.240 4.240 4 C -0.011 4.011 5 N -0.268 5.268 6 C 0.153 3.847 7 O -0.206 6.206 8 C 0.034 3.966 9 C -0.150 4.150 10 C -0.067 4.067 11 N -0.246 5.246 12 C -0.095 4.095 13 C 0.285 3.715 14 O -0.418 6.418 15 N -0.357 5.357 16 C 0.100 3.900 17 C -0.582 4.582 18 H 0.097 0.903 19 C -0.126 4.126 20 N -0.530 5.530 21 Si 0.703 3.297 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.185 1.185 25 C -0.071 4.071 26 C -0.163 4.163 27 C -0.218 4.218 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.153 0.847 32 H 0.175 0.825 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.054 0.946 38 H 0.120 0.880 39 H 0.078 0.922 40 H 0.229 0.771 41 H 0.043 0.957 42 H 0.037 0.963 43 H 0.077 0.923 44 H 0.047 0.953 45 H 0.122 0.878 46 H 0.098 0.902 47 H 0.087 0.913 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -26.820 8.392 15.537 32.111 hybrid contribution -0.318 0.821 -0.146 0.893 sum -27.138 9.213 15.391 32.530 Atomic orbital electron populations 1.20841 0.89860 1.03566 1.03048 1.20126 0.96709 0.92112 0.92776 1.21857 0.95410 0.98679 1.08016 1.22414 0.91710 0.94816 0.92196 1.67315 1.41435 0.98336 1.19679 1.19847 0.89003 0.85253 0.90610 1.86291 1.21333 1.26170 1.86847 1.22511 0.76368 1.00026 0.97660 1.21670 0.94475 0.98455 1.00394 1.22044 0.94447 1.01196 0.89020 1.61572 1.08175 1.42046 1.12805 1.21972 0.88850 1.02485 0.96162 1.20355 0.83215 0.77806 0.90172 1.90622 1.50164 1.50217 1.50830 1.46171 1.05943 1.71578 1.12031 1.19466 0.96134 0.96315 0.78106 1.21104 0.88930 1.52024 0.96111 0.90270 1.24799 0.94920 0.93958 0.98954 1.69883 1.08562 1.48828 1.25720 0.86815 0.81146 0.78887 0.82839 1.19886 1.20906 1.18459 1.22201 0.93923 0.89546 1.01477 1.21946 0.95505 1.03234 0.95650 1.20944 0.91423 0.99725 1.09740 0.90292 0.90769 0.90796 0.84728 0.82452 0.89577 0.89793 0.90830 0.89733 0.94643 0.88001 0.92164 0.77114 0.95696 0.96276 0.92277 0.95286 0.87848 0.90186 0.91254 0.84261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.52 10.06 36.01 0.36 -0.16 16 2 C -0.01 -0.07 5.91 -104.35 -0.62 -0.69 16 3 C -0.22 -1.57 9.81 -39.43 -0.39 -1.96 16 4 C 0.14 1.24 11.18 -17.56 -0.20 1.04 16 5 N -0.54 -6.15 8.64 -13.33 -0.12 -6.27 16 6 C 0.33 3.83 7.46 -17.12 -0.13 3.70 16 7 O -0.30 -3.68 9.77 -18.73 -0.18 -3.87 16 8 C 0.09 1.06 2.45 -26.61 -0.07 1.00 16 9 C -0.11 -1.16 5.75 -26.65 -0.15 -1.32 16 10 C 0.06 0.64 5.46 -3.83 -0.02 0.62 16 11 N -0.52 -7.18 4.40 -236.11 -1.04 -8.22 16 12 C 0.04 0.50 5.45 -4.97 -0.03 0.47 16 13 C 0.50 9.43 7.50 -10.98 -0.08 9.35 16 14 O -0.54 -12.20 14.32 5.56 0.08 -12.12 16 15 N -0.71 -14.21 5.55 -61.47 -0.34 -14.55 16 16 C 0.22 5.48 4.50 -5.19 -0.02 5.45 16 17 C -0.54 -14.95 9.83 -34.44 -0.34 -15.29 16 18 H 0.08 2.26 7.84 -52.49 -0.41 1.84 16 19 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 20 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 21 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 22 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 25 C 0.06 0.80 5.10 -3.84 -0.02 0.78 16 26 C -0.13 -1.66 5.72 -26.65 -0.15 -1.81 16 27 C -0.20 -1.85 9.75 -39.28 -0.38 -2.23 16 28 H 0.08 0.28 8.14 -51.92 -0.42 -0.14 16 29 H 0.07 0.25 8.10 -51.93 -0.42 -0.17 16 30 H 0.07 0.29 8.10 -51.93 -0.42 -0.13 16 31 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 32 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.09 1.04 6.98 -51.93 -0.36 0.68 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.77 8.01 -51.93 -0.42 0.35 16 37 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.10 1.17 7.99 -51.93 -0.41 0.76 16 39 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 40 H 0.40 6.92 8.32 -40.82 -0.34 6.58 16 41 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 42 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.10 1.78 5.78 -51.93 -0.30 1.48 16 46 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 389.76 15.07 5.87 5.87 Total: -1.00 -33.72 389.76 -9.62 -43.34 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -7.67 Total: 3.59 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -2.33 Total: 1.06 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -0.72 Total: -54.82 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.10 Total: -15.98 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.72 -9.62 -43.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782514554.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.249 kcal (2) G-P(sol) polarization free energy of solvation -33.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds