Wall clock time and date at job start Tue Mar 31 2020 17:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38831 * 120.75211 * 2 1 4 4 C 1.38046 * 119.28836 * 180.02562 * 3 2 1 5 5 N 1.31965 * 120.83366 * 359.74360 * 4 3 2 6 6 C 1.32251 * 121.64816 * 0.51872 * 5 4 3 7 7 O 1.35676 * 119.68503 * 179.75389 * 6 5 4 8 8 C 1.42892 * 117.00150 * 359.72946 * 7 6 5 9 9 C 1.53120 * 109.52490 * 149.99600 * 8 7 6 10 10 C 1.53041 * 109.28182 * 177.55689 * 9 8 7 11 11 N 1.46849 * 109.52442 * 300.82868 * 10 9 8 12 12 C 1.46901 * 110.99649 * 185.83742 * 11 10 9 13 13 C 1.50701 * 109.46921 * 169.99608 * 12 11 10 14 14 O 1.21280 * 119.99781 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99795 * 179.97438 * 13 12 11 16 16 C 1.46497 * 119.99566 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.46835 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00280 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99788 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99711 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00219 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.46794 * 90.00022 * 21 19 17 23 23 H 1.48505 * 109.46876 * 210.00288 * 21 19 17 24 24 H 1.48501 * 109.46982 * 330.00118 * 21 19 17 25 25 C 1.46839 * 111.20047 * 61.73811 * 11 10 9 26 26 C 1.53034 * 109.52552 * 298.25821 * 25 11 10 27 27 C 1.38375 * 120.75907 * 180.02562 * 2 1 3 28 28 H 1.09009 * 109.47180 * 269.97733 * 1 2 3 29 29 H 1.09001 * 109.47689 * 29.98274 * 1 2 3 30 30 H 1.09003 * 109.47002 * 149.98374 * 1 2 3 31 31 H 1.07998 * 120.35712 * 0.04038 * 3 2 1 32 32 H 1.08001 * 119.58688 * 179.97438 * 4 3 2 33 33 H 1.09005 * 109.57463 * 29.83915 * 8 7 6 34 34 H 1.09005 * 109.50142 * 57.62472 * 9 8 7 35 35 H 1.08998 * 109.50777 * 297.50369 * 9 8 7 36 36 H 1.08991 * 109.46218 * 180.80508 * 10 9 8 37 37 H 1.09001 * 109.45364 * 60.83790 * 10 9 8 38 38 H 1.09002 * 109.47401 * 49.99636 * 12 11 10 39 39 H 1.09001 * 109.46874 * 289.99649 * 12 11 10 40 40 H 0.96995 * 120.00011 * 0.02562 * 15 13 12 41 41 H 1.09001 * 109.47487 * 300.00114 * 16 15 13 42 42 H 1.09002 * 109.47182 * 60.00342 * 16 15 13 43 43 H 0.97009 * 119.99937 * 179.97438 * 20 19 17 44 44 H 1.09006 * 109.46266 * 58.27078 * 25 11 10 45 45 H 1.09002 * 109.46276 * 178.24270 * 25 11 10 46 46 H 1.09006 * 109.50444 * 299.24199 * 26 25 11 47 47 H 1.09003 * 109.50687 * 179.12283 * 26 25 11 48 48 H 1.07999 * 120.44383 * 359.96049 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1931 0.0000 4 6 3.5969 1.1578 -0.0005 5 7 4.2441 0.0078 0.0040 6 6 3.6033 -1.1491 -0.0009 7 8 4.3089 -2.3080 -0.0010 8 6 5.7337 -2.2000 -0.0016 9 6 6.3387 -3.4074 0.7200 10 6 7.8654 -3.3173 0.6631 11 7 8.3036 -3.2918 -0.7383 12 6 9.7686 -3.3452 -0.8328 13 6 10.1717 -3.5644 -2.2682 14 8 9.3222 -3.6657 -3.1279 15 7 11.4762 -3.6468 -2.5968 16 6 11.8681 -3.8594 -3.9923 17 6 13.3710 -3.9142 -4.0892 18 1 13.9739 -3.8024 -3.2002 19 6 13.9762 -4.1072 -5.3129 20 7 15.2878 -4.1545 -5.3976 21 14 12.9334 -4.2999 -6.8508 22 1 12.6954 -2.9657 -7.4577 23 1 13.6435 -5.1674 -7.8248 24 1 11.6325 -4.9199 -6.4922 25 6 7.7735 -2.1154 -1.4391 26 6 6.2441 -2.1695 -1.4449 27 6 2.2147 -1.1891 -0.0005 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3633 -0.8899 -0.5141 31 1 1.6951 2.1387 0.0007 32 1 4.1539 2.0831 -0.0010 33 1 6.0308 -1.2840 0.5091 34 1 6.0100 -4.3251 0.2323 35 1 6.0129 -3.4106 1.7602 36 1 8.2992 -4.1829 1.1636 37 1 8.1943 -2.4063 1.1630 38 1 10.1425 -4.1661 -0.2210 39 1 10.1901 -2.4052 -0.4765 40 1 12.1556 -3.5654 -1.9092 41 1 11.4468 -4.7993 -4.3489 42 1 11.4939 -3.0383 -4.6038 43 1 15.7137 -4.2906 -6.2585 44 1 8.1028 -1.2099 -0.9292 45 1 8.1406 -2.1080 -2.4654 46 1 5.9138 -3.0678 -1.9667 47 1 5.8506 -1.2883 -1.9516 48 1 1.6944 -2.1355 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782514554.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:54 Heat of formation + Delta-G solvation = -62.324624 kcal Electronic energy + Delta-G solvation = -27872.634744 eV Core-core repulsion = 23926.622985 eV Total energy + Delta-G solvation = -3946.011759 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.76557 -40.91258 -39.79628 -38.29654 -36.10975 -34.77402 -34.41816 -33.94299 -31.93055 -31.31326 -30.34440 -28.83486 -27.85809 -24.83770 -24.53397 -24.15258 -23.67530 -22.46033 -21.44055 -20.91007 -19.14087 -18.97166 -18.02808 -17.67773 -17.32145 -16.86098 -16.84026 -16.48282 -16.37602 -15.99622 -15.70782 -15.52976 -15.19748 -14.98660 -14.72420 -14.62132 -14.38298 -14.20654 -13.98433 -13.87875 -13.60973 -13.31897 -13.19324 -13.14326 -13.00799 -12.76597 -12.58478 -12.55768 -12.33975 -12.24958 -11.94701 -11.65683 -11.61288 -11.37912 -10.92295 -10.66769 -10.54540 -10.48987 -9.89405 -9.47115 -9.29635 -8.40739 -6.47263 0.19571 0.29493 1.31152 1.33731 1.46473 1.77436 1.99299 2.26581 2.30733 2.78775 2.94682 2.99659 3.32868 3.69884 3.73455 3.82299 3.90486 3.97936 4.07773 4.16587 4.20246 4.22715 4.27806 4.33501 4.44880 4.46371 4.55665 4.67831 4.72220 4.78131 4.79285 4.80187 4.84791 4.89879 4.96136 4.98356 5.03538 5.07055 5.14450 5.24760 5.26690 5.39927 5.55752 5.60597 5.89649 6.08845 6.12389 6.29803 6.54062 6.89502 6.90398 7.16181 7.47159 8.73886 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022592 B = 0.001941 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.069623 B =14425.603832 C =15026.919130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.011 4.011 3 C -0.212 4.212 4 C 0.128 3.872 5 N -0.568 5.568 6 C 0.301 3.699 7 O -0.313 6.313 8 C 0.098 3.902 9 C -0.108 4.108 10 C 0.063 3.937 11 N -0.541 5.541 12 C 0.048 3.952 13 C 0.497 3.503 14 O -0.581 6.581 15 N -0.707 5.707 16 C 0.234 3.766 17 C -0.546 4.546 18 H 0.061 0.939 19 C 0.027 3.973 20 N -0.930 5.930 21 Si 0.936 3.064 22 H -0.266 1.266 23 H -0.272 1.272 24 H -0.263 1.263 25 C 0.063 3.937 26 C -0.116 4.116 27 C -0.210 4.210 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.166 0.834 32 H 0.180 0.820 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.051 0.949 38 H 0.133 0.867 39 H 0.087 0.913 40 H 0.409 0.591 41 H 0.010 0.990 42 H 0.008 0.992 43 H 0.272 0.728 44 H 0.041 0.959 45 H 0.068 0.932 46 H 0.058 0.942 47 H 0.059 0.941 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.938 10.183 18.167 35.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.019 4.019 3 C -0.232 4.232 4 C -0.027 4.027 5 N -0.293 5.293 6 C 0.124 3.876 7 O -0.221 6.221 8 C 0.042 3.958 9 C -0.145 4.145 10 C -0.064 4.064 11 N -0.267 5.267 12 C -0.082 4.082 13 C 0.284 3.716 14 O -0.461 6.461 15 N -0.358 5.358 16 C 0.110 3.890 17 C -0.584 4.584 18 H 0.079 0.921 19 C -0.173 4.173 20 N -0.569 5.569 21 Si 0.760 3.240 22 H -0.191 1.191 23 H -0.197 1.197 24 H -0.187 1.187 25 C -0.065 4.065 26 C -0.155 4.155 27 C -0.230 4.230 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.183 0.817 32 H 0.197 0.803 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.124 0.876 37 H 0.070 0.930 38 H 0.151 0.849 39 H 0.105 0.895 40 H 0.245 0.755 41 H 0.028 0.972 42 H 0.026 0.974 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.086 0.914 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -28.730 9.371 17.211 34.777 hybrid contribution 0.201 0.602 -0.604 0.876 sum -28.530 9.973 16.607 34.485 Atomic orbital electron populations 1.20918 0.87480 1.04553 1.04121 1.20556 0.98392 0.91525 0.91414 1.22235 0.94977 0.99896 1.06057 1.22919 0.92863 0.94796 0.92075 1.67268 1.42435 0.99009 1.20561 1.20142 0.89786 0.85221 0.92492 1.86264 1.21326 1.27092 1.87421 1.22396 0.76599 1.00628 0.96224 1.21670 0.94553 0.97082 1.01230 1.22150 0.94267 1.02949 0.87027 1.61513 1.08222 1.41884 1.15048 1.21946 0.89124 1.04962 0.92215 1.21318 0.81946 0.76043 0.92260 1.90614 1.51081 1.51675 1.52713 1.46014 1.07213 1.72070 1.10523 1.19038 0.94090 0.95061 0.80800 1.21312 0.90249 1.51258 0.95589 0.92076 1.25578 0.95929 0.93793 1.02016 1.69979 1.10049 1.50081 1.26782 0.85881 0.79389 0.79248 0.79499 1.19067 1.19743 1.18727 1.22005 0.94195 0.90510 0.99790 1.21814 0.95143 1.01622 0.96899 1.21186 0.90815 1.01002 1.10016 0.89002 0.89225 0.90415 0.81677 0.80290 0.89761 0.90992 0.88723 0.87551 0.93044 0.84899 0.89533 0.75537 0.97238 0.97379 0.91862 0.94119 0.91403 0.92361 0.92216 0.83590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.06 71.24 0.72 0.00 16 2 C -0.01 -0.15 5.91 -19.69 -0.12 -0.27 16 3 C -0.21 -2.58 9.81 22.37 0.22 -2.36 16 4 C 0.13 2.05 11.18 84.63 0.95 3.00 16 5 N -0.57 -12.78 8.64 -308.94 -2.67 -15.45 16 6 C 0.30 7.02 7.46 84.79 0.63 7.65 16 7 O -0.31 -7.85 9.77 -89.93 -0.88 -8.73 16 8 C 0.10 2.29 2.45 30.68 0.08 2.36 16 9 C -0.11 -2.08 5.75 30.65 0.18 -1.91 16 10 C 0.06 1.15 5.46 86.33 0.47 1.62 16 11 N -0.54 -14.14 4.40 -900.93 -3.96 -18.10 16 12 C 0.05 1.20 5.45 85.56 0.47 1.67 16 13 C 0.50 18.47 7.50 87.66 0.66 19.13 16 14 O -0.58 -26.64 14.32 -3.03 -0.04 -26.68 16 15 N -0.71 -28.11 5.55 -466.78 -2.59 -30.70 16 16 C 0.23 11.63 4.50 85.63 0.38 12.02 16 17 C -0.55 -30.35 9.83 25.60 0.25 -30.10 16 18 H 0.06 3.54 7.84 -2.91 -0.02 3.52 16 19 C 0.03 1.55 5.47 84.66 0.46 2.02 16 20 N -0.93 -55.80 13.96 21.45 0.30 -55.50 16 21 Si 0.94 44.80 27.47 68.60 1.88 46.68 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 24 H -0.26 -12.60 6.54 99.48 0.65 -11.95 16 25 C 0.06 1.79 5.10 86.33 0.44 2.23 16 26 C -0.12 -3.21 5.72 30.65 0.18 -3.03 16 27 C -0.21 -3.83 9.75 22.47 0.22 -3.61 16 28 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 29 H 0.09 0.31 8.10 -2.39 -0.02 0.30 16 30 H 0.08 0.45 8.10 -2.39 -0.02 0.43 16 31 H 0.17 0.93 8.06 -2.91 -0.02 0.90 16 32 H 0.18 1.84 8.06 -2.91 -0.02 1.82 16 33 H 0.08 1.99 6.98 -2.38 -0.02 1.98 16 34 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.11 1.52 8.01 -2.39 -0.02 1.50 16 37 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.13 2.56 7.99 -2.39 -0.02 2.54 16 39 H 0.09 1.78 8.12 -2.39 -0.02 1.76 16 40 H 0.41 13.92 8.32 -92.71 -0.77 13.15 16 41 H 0.01 0.51 7.20 -2.39 -0.02 0.49 16 42 H 0.01 0.43 7.57 -2.39 -0.02 0.41 16 43 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 44 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 45 H 0.07 2.43 5.78 -2.39 -0.01 2.42 16 46 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 47 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -75.16 389.76 -1.65 -76.80 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.13 Total: 21.25 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 6.18 Total: 10.42 kcal Atomic # 7 Polarization: -110.83 SS G_CDS: -8.92 Total: -119.75 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -0.92 Total: -35.41 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.88 Total: 46.68 kcal Total: -75.16 -1.65 -76.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782514554.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.480 kcal (2) G-P(sol) polarization free energy of solvation -75.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds