Wall clock time and date at job start Tue Mar 31 2020 18:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32214 * 120.51012 * 2 1 4 4 C 1.31904 * 121.14397 * 179.75967 * 3 2 1 5 5 C 1.50700 * 118.90745 * 180.29488 * 4 3 2 6 6 C 1.52992 * 109.47415 * 120.23115 * 5 4 3 7 7 C 1.52998 * 109.47285 * 240.23460 * 5 4 3 8 8 N 1.31766 * 122.19235 * 0.53675 * 4 3 2 9 9 C 1.32738 * 120.86962 * 359.73335 * 8 4 3 10 10 O 1.35277 * 120.61361 * 179.97438 * 9 8 4 11 11 C 1.39762 * 120.50825 * 180.28311 * 2 1 3 12 12 C 1.47535 * 120.98257 * 359.97438 * 11 2 1 13 13 O 1.21586 * 120.00258 * 89.99880 * 12 11 2 14 14 N 1.34785 * 120.00028 * 270.00199 * 12 11 2 15 15 C 1.46921 * 120.62603 * 359.71663 * 14 12 11 16 16 C 1.53626 * 108.54191 * 126.36973 * 15 14 12 17 17 C 1.53047 * 109.24185 * 54.85217 * 16 15 14 18 18 C 1.53043 * 109.53788 * 298.51488 * 17 16 15 19 19 H 1.09001 * 109.49458 * 301.40998 * 18 17 16 20 20 C 1.50699 * 109.49523 * 181.31545 * 18 17 16 21 21 H 1.08006 * 120.00307 * 0.15971 * 20 18 17 22 22 C 1.37880 * 119.99702 * 180.15905 * 20 18 17 23 23 N 1.31505 * 120.00172 * 359.97438 * 22 20 18 24 24 Si 1.86801 * 119.99823 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46958 * 59.99907 * 24 22 20 26 26 H 1.48501 * 109.47088 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47390 * 300.00137 * 24 22 20 28 28 C 1.46921 * 120.63031 * 179.97438 * 14 12 11 29 29 H 1.09002 * 109.47152 * 269.71749 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.71850 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.71830 * 1 2 3 32 32 H 1.08999 * 109.46918 * 0.22933 * 5 4 3 33 33 H 1.09001 * 109.47614 * 180.02562 * 6 5 4 34 34 H 1.09005 * 109.47318 * 300.00238 * 6 5 4 35 35 H 1.08999 * 109.47226 * 60.00007 * 6 5 4 36 36 H 1.09003 * 109.47445 * 59.99407 * 7 5 4 37 37 H 1.08993 * 109.47481 * 179.97438 * 7 5 4 38 38 H 1.09002 * 109.47205 * 299.99750 * 7 5 4 39 39 H 0.96710 * 114.00475 * 270.02488 * 10 9 8 40 40 H 1.09000 * 109.58912 * 246.19843 * 15 14 12 41 41 H 1.08995 * 109.59345 * 6.63143 * 15 14 12 42 42 H 1.09005 * 109.63562 * 294.86601 * 16 15 14 43 43 H 1.08994 * 109.46343 * 174.73625 * 16 15 14 44 44 H 1.08997 * 109.45938 * 178.49108 * 17 16 15 45 45 H 1.09000 * 109.44562 * 58.52498 * 17 16 15 46 46 H 0.97002 * 120.00275 * 179.97438 * 23 22 20 47 47 H 1.09002 * 109.58700 * 353.37201 * 28 14 12 48 48 H 1.08994 * 109.58851 * 113.65636 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1391 0.0000 4 6 3.4972 1.1537 0.0047 5 6 4.2110 2.4809 0.0113 6 6 5.0878 2.5823 1.2609 7 6 5.0878 2.5946 -1.2374 8 7 4.2115 0.0465 -0.0008 9 6 3.6234 -1.1435 -0.0061 10 8 4.3618 -2.2769 -0.0123 11 6 2.2165 -1.2041 -0.0059 12 6 1.5124 -2.5006 -0.0118 13 8 1.2217 -3.0298 -1.0671 14 7 1.1911 -3.0982 1.1528 15 6 1.5410 -2.4740 2.4359 16 6 0.2682 -2.3646 3.2892 17 6 -0.3732 -3.7482 3.4178 18 6 -0.7663 -4.2611 2.0305 19 1 -1.4591 -3.5594 1.5661 20 6 -1.4269 -5.6093 2.1613 21 1 -1.5564 -6.0549 3.1366 22 6 -1.8662 -6.2738 1.0359 23 7 -1.7091 -5.7310 -0.1515 24 14 -2.6845 -7.9452 1.1980 25 1 -3.9019 -7.8208 2.0393 26 1 -3.0617 -8.4443 -0.1488 27 1 -1.7399 -8.8994 1.8323 28 6 0.4894 -4.3890 1.1631 29 1 -0.3633 -0.0051 1.0277 30 1 -0.3633 -0.8875 -0.5182 31 1 -0.3633 0.8925 -0.5095 32 1 3.4780 3.2876 0.0152 33 1 5.6038 3.5425 1.2659 34 1 4.4632 2.5013 2.1506 35 1 5.8208 1.7756 1.2570 36 1 4.4631 2.5224 -2.1278 37 1 5.6037 3.5547 -1.2330 38 1 5.8208 1.7879 -1.2415 39 1 4.5762 -2.6020 -0.8975 40 1 2.2785 -3.0885 2.9522 41 1 1.9504 -1.4795 2.2590 42 1 -0.4345 -1.6808 2.8128 43 1 0.5260 -1.9897 4.2796 44 1 -1.2621 -3.6795 4.0449 45 1 0.3389 -4.4375 3.8715 46 1 -2.0177 -6.1986 -0.9433 47 1 0.2048 -4.6584 0.1460 48 1 1.1436 -5.1573 1.5751 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855255150.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:58 Heat of formation + Delta-G solvation = -44.028836 kcal Electronic energy + Delta-G solvation = -30103.300981 eV Core-core repulsion = 26158.082587 eV Total energy + Delta-G solvation = -3945.218395 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.57092 -39.31836 -37.92840 -36.77174 -35.85825 -33.65017 -33.42183 -31.96086 -31.40938 -29.81244 -28.65160 -27.39803 -25.73878 -25.08198 -24.05748 -23.18174 -21.89477 -20.91429 -20.06018 -19.01403 -18.60055 -17.97226 -17.14598 -16.26433 -16.02841 -15.63114 -15.12520 -14.61855 -14.58680 -14.46273 -14.12312 -13.81243 -13.57326 -13.54312 -13.41742 -12.85750 -12.69638 -12.64832 -12.63742 -12.30143 -12.25948 -12.11039 -11.95827 -11.89560 -11.41643 -11.15835 -11.06059 -11.04338 -10.95902 -10.57749 -10.49326 -10.39009 -10.28781 -9.95671 -9.63059 -9.42576 -9.25859 -9.11117 -8.97906 -8.47818 -7.85459 -6.04298 -4.12909 0.55279 0.82655 2.88430 3.13117 3.28944 3.35619 3.36336 3.38253 3.63877 3.68234 4.12032 4.39401 4.58864 4.73596 4.82237 4.87177 4.93478 5.16081 5.23330 5.26600 5.33125 5.41243 5.42832 5.53227 5.55251 5.61484 5.62114 5.67898 5.72495 5.88520 5.94613 5.98757 6.09600 6.11201 6.18929 6.26236 6.53436 6.59574 6.75085 6.80909 6.91080 7.06480 7.16943 7.22419 7.56802 7.80164 7.91866 7.92727 8.12086 8.32571 8.65823 8.90760 9.52936 11.01055 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022658 B = 0.003156 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.493583 B = 8869.791604 C = 9099.921247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.225 3.775 3 N -0.523 5.523 4 C 0.353 3.647 5 C -0.026 4.026 6 C -0.141 4.141 7 C -0.141 4.141 8 N -0.535 5.535 9 C 0.392 3.608 10 O -0.468 6.468 11 C -0.238 4.238 12 C 0.567 3.433 13 O -0.527 6.527 14 N -0.588 5.588 15 C 0.113 3.887 16 C -0.132 4.132 17 C -0.111 4.111 18 C 0.042 3.958 19 H 0.030 0.970 20 C -0.522 4.522 21 H 0.058 0.942 22 C 0.064 3.936 23 N -0.881 5.881 24 Si 0.893 3.107 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 C 0.112 3.888 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.412 0.588 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.050 0.950 46 H 0.264 0.736 47 H 0.124 0.876 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.573 15.837 1.327 19.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.080 3.920 3 N -0.239 5.239 4 C 0.085 3.915 5 C -0.046 4.046 6 C -0.199 4.199 7 C -0.199 4.199 8 N -0.260 5.260 9 C 0.204 3.796 10 O -0.276 6.276 11 C -0.247 4.247 12 C 0.351 3.649 13 O -0.404 6.404 14 N -0.319 5.319 15 C -0.011 4.011 16 C -0.171 4.171 17 C -0.148 4.148 18 C 0.023 3.977 19 H 0.048 0.952 20 C -0.560 4.560 21 H 0.076 0.924 22 C -0.139 4.139 23 N -0.518 5.518 24 Si 0.721 3.279 25 H -0.203 1.203 26 H -0.212 1.212 27 H -0.202 1.202 28 C -0.008 4.008 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.273 0.727 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.142 0.858 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.807 16.284 1.158 20.147 hybrid contribution -0.664 -1.911 -0.317 2.048 sum 11.143 14.373 0.841 18.206 Atomic orbital electron populations 1.20942 0.86721 1.05054 1.04473 1.21818 0.97761 0.85833 0.86624 1.68125 1.09288 1.29587 1.16855 1.23035 0.86084 0.93572 0.88773 1.20012 0.97087 0.90065 0.97466 1.21801 0.99623 1.02682 0.95832 1.21800 0.99591 1.02660 0.95863 1.67714 1.42394 0.98051 1.17806 1.19342 0.85582 0.85665 0.88973 1.84624 1.72528 1.35984 1.34465 1.21984 0.95045 0.97718 1.09979 1.17537 0.79345 0.83223 0.84793 1.90842 1.54381 1.64787 1.30436 1.48460 1.55941 1.23439 1.04049 1.21674 0.97308 0.96920 0.85194 1.22032 0.96689 0.99881 0.98457 1.21638 0.99136 0.93583 1.00488 1.18952 0.92493 0.96746 0.89529 0.95198 1.21032 1.38814 1.03087 0.93085 0.92353 1.25042 0.95595 0.97892 0.95411 1.69855 1.46003 1.38170 0.97791 0.86646 0.79898 0.84225 0.77176 1.20264 1.21246 1.20247 1.22390 0.92570 0.79177 1.06636 0.88878 0.89043 0.89259 0.88288 0.91523 0.92661 0.91358 0.92682 0.91516 0.91404 0.72703 0.91643 0.92285 0.92103 0.92158 0.92824 0.93078 0.92546 0.85776 0.93637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 9.85 36.01 0.35 -1.23 16 2 C 0.23 3.43 6.73 -81.86 -0.55 2.88 16 3 N -0.52 -7.42 10.21 -6.72 -0.07 -7.49 16 4 C 0.35 4.65 6.34 -157.12 -1.00 3.65 16 5 C -0.03 -0.25 3.25 -91.78 -0.30 -0.55 16 6 C -0.14 -1.19 9.08 37.15 0.34 -0.85 16 7 C -0.14 -1.17 9.08 37.16 0.34 -0.83 16 8 N -0.53 -7.56 9.79 -10.46 -0.10 -7.66 16 9 C 0.39 6.00 7.85 -16.19 -0.13 5.88 16 10 O -0.47 -6.58 13.10 -17.52 -0.23 -6.81 16 11 C -0.24 -3.96 3.67 -104.56 -0.38 -4.35 16 12 C 0.57 11.31 5.40 -12.47 -0.07 11.24 16 13 O -0.53 -12.53 16.52 5.29 0.09 -12.44 16 14 N -0.59 -11.67 2.97 -173.76 -0.52 -12.18 16 15 C 0.11 1.86 6.37 -3.49 -0.02 1.84 16 16 C -0.13 -2.12 6.10 -26.38 -0.16 -2.28 16 17 C -0.11 -2.14 5.10 -26.68 -0.14 -2.28 16 18 C 0.04 1.00 2.25 -91.67 -0.21 0.79 16 19 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 20 C -0.52 -13.75 8.56 -34.44 -0.29 -14.04 16 21 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 22 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 23 N -0.88 -24.96 11.39 55.43 0.63 -24.32 16 24 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 C 0.11 2.63 5.40 -3.74 -0.02 2.61 16 29 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.09 1.48 7.18 -51.93 -0.37 1.11 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.10 0.87 8.09 -51.93 -0.42 0.45 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.64 8.00 -51.93 -0.42 0.23 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.62 8.00 -51.93 -0.42 0.20 16 39 H 0.41 4.07 9.06 45.56 0.41 4.48 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 0.91 6.23 -51.93 -0.32 0.59 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 47 H 0.12 3.40 5.12 -51.93 -0.27 3.14 16 48 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 388.76 15.07 5.86 5.86 Total: -1.00 -31.47 388.76 -8.53 -40.00 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.84 Total: 5.09 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -2.33 Total: 4.11 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -0.06 Total: -51.66 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.14 Total: -19.25 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.47 -8.53 -40.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855255150.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.032 kcal (2) G-P(sol) polarization free energy of solvation -31.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds