Wall clock time and date at job start Tue Mar 31 2020 18:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32214 * 120.51012 * 2 1 4 4 C 1.31904 * 121.14397 * 179.75967 * 3 2 1 5 5 C 1.50700 * 118.90745 * 180.29488 * 4 3 2 6 6 C 1.52992 * 109.47415 * 120.23115 * 5 4 3 7 7 C 1.52998 * 109.47285 * 240.23460 * 5 4 3 8 8 N 1.31766 * 122.19235 * 0.53675 * 4 3 2 9 9 C 1.32738 * 120.86962 * 359.73335 * 8 4 3 10 10 O 1.35277 * 120.61361 * 179.97438 * 9 8 4 11 11 C 1.39762 * 120.50825 * 180.28311 * 2 1 3 12 12 C 1.47535 * 120.98257 * 359.97438 * 11 2 1 13 13 O 1.21586 * 120.00258 * 89.99880 * 12 11 2 14 14 N 1.34785 * 120.00028 * 270.00199 * 12 11 2 15 15 C 1.46921 * 120.62603 * 359.71663 * 14 12 11 16 16 C 1.53626 * 108.54191 * 126.36973 * 15 14 12 17 17 C 1.53047 * 109.24185 * 54.85217 * 16 15 14 18 18 C 1.53043 * 109.53788 * 298.51488 * 17 16 15 19 19 H 1.09001 * 109.49458 * 301.40998 * 18 17 16 20 20 C 1.50699 * 109.49523 * 181.31545 * 18 17 16 21 21 H 1.08006 * 120.00307 * 0.15971 * 20 18 17 22 22 C 1.37880 * 119.99702 * 180.15905 * 20 18 17 23 23 N 1.31505 * 120.00172 * 359.97438 * 22 20 18 24 24 Si 1.86801 * 119.99823 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46958 * 59.99907 * 24 22 20 26 26 H 1.48501 * 109.47088 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47390 * 300.00137 * 24 22 20 28 28 C 1.46921 * 120.63031 * 179.97438 * 14 12 11 29 29 H 1.09002 * 109.47152 * 269.71749 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.71850 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.71830 * 1 2 3 32 32 H 1.08999 * 109.46918 * 0.22933 * 5 4 3 33 33 H 1.09001 * 109.47614 * 180.02562 * 6 5 4 34 34 H 1.09005 * 109.47318 * 300.00238 * 6 5 4 35 35 H 1.08999 * 109.47226 * 60.00007 * 6 5 4 36 36 H 1.09003 * 109.47445 * 59.99407 * 7 5 4 37 37 H 1.08993 * 109.47481 * 179.97438 * 7 5 4 38 38 H 1.09002 * 109.47205 * 299.99750 * 7 5 4 39 39 H 0.96710 * 114.00475 * 270.02488 * 10 9 8 40 40 H 1.09000 * 109.58912 * 246.19843 * 15 14 12 41 41 H 1.08995 * 109.59345 * 6.63143 * 15 14 12 42 42 H 1.09005 * 109.63562 * 294.86601 * 16 15 14 43 43 H 1.08994 * 109.46343 * 174.73625 * 16 15 14 44 44 H 1.08997 * 109.45938 * 178.49108 * 17 16 15 45 45 H 1.09000 * 109.44562 * 58.52498 * 17 16 15 46 46 H 0.97002 * 120.00275 * 179.97438 * 23 22 20 47 47 H 1.09002 * 109.58700 * 353.37201 * 28 14 12 48 48 H 1.08994 * 109.58851 * 113.65636 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1391 0.0000 4 6 3.4972 1.1537 0.0047 5 6 4.2110 2.4809 0.0113 6 6 5.0878 2.5823 1.2609 7 6 5.0878 2.5946 -1.2374 8 7 4.2115 0.0465 -0.0008 9 6 3.6234 -1.1435 -0.0061 10 8 4.3618 -2.2769 -0.0123 11 6 2.2165 -1.2041 -0.0059 12 6 1.5124 -2.5006 -0.0118 13 8 1.2217 -3.0298 -1.0671 14 7 1.1911 -3.0982 1.1528 15 6 1.5410 -2.4740 2.4359 16 6 0.2682 -2.3646 3.2892 17 6 -0.3732 -3.7482 3.4178 18 6 -0.7663 -4.2611 2.0305 19 1 -1.4591 -3.5594 1.5661 20 6 -1.4269 -5.6093 2.1613 21 1 -1.5564 -6.0549 3.1366 22 6 -1.8662 -6.2738 1.0359 23 7 -1.7091 -5.7310 -0.1515 24 14 -2.6845 -7.9452 1.1980 25 1 -3.9019 -7.8208 2.0393 26 1 -3.0617 -8.4443 -0.1488 27 1 -1.7399 -8.8994 1.8323 28 6 0.4894 -4.3890 1.1631 29 1 -0.3633 -0.0051 1.0277 30 1 -0.3633 -0.8875 -0.5182 31 1 -0.3633 0.8925 -0.5095 32 1 3.4780 3.2876 0.0152 33 1 5.6038 3.5425 1.2659 34 1 4.4632 2.5013 2.1506 35 1 5.8208 1.7756 1.2570 36 1 4.4631 2.5224 -2.1278 37 1 5.6037 3.5547 -1.2330 38 1 5.8208 1.7879 -1.2415 39 1 4.5762 -2.6020 -0.8975 40 1 2.2785 -3.0885 2.9522 41 1 1.9504 -1.4795 2.2590 42 1 -0.4345 -1.6808 2.8128 43 1 0.5260 -1.9897 4.2796 44 1 -1.2621 -3.6795 4.0449 45 1 0.3389 -4.4375 3.8715 46 1 -2.0177 -6.1986 -0.9433 47 1 0.2048 -4.6584 0.1460 48 1 1.1436 -5.1573 1.5751 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855255150.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:57 Heat of formation + Delta-G solvation = -66.288515 kcal Electronic energy + Delta-G solvation = -30104.266233 eV Core-core repulsion = 26158.082587 eV Total energy + Delta-G solvation = -3946.183647 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.75335 -40.84788 -39.05867 -38.39945 -36.82004 -35.32281 -34.66571 -33.59713 -32.64942 -31.52777 -29.86142 -28.03342 -27.26182 -26.77060 -25.44189 -24.29677 -23.52420 -22.13163 -21.35639 -20.25161 -20.03700 -19.14926 -18.76677 -18.06811 -17.36225 -17.02741 -16.51941 -16.17478 -15.80277 -15.52761 -15.31249 -15.21418 -15.17073 -14.66191 -14.53803 -14.40081 -14.31028 -13.89452 -13.81155 -13.54544 -13.53558 -13.27552 -12.93877 -12.89019 -12.85892 -12.77307 -12.33375 -12.28016 -12.13806 -12.12105 -11.92053 -11.84540 -11.67268 -11.51713 -11.21806 -10.98776 -10.84578 -10.57772 -10.52673 -10.41619 -9.54091 -8.10836 -6.26988 -0.61116 -0.33153 1.36936 1.42378 1.43263 1.51241 1.97445 2.02205 2.38976 2.43043 2.61889 2.99315 3.17270 3.28698 3.74000 3.76253 3.89104 3.97755 4.06212 4.15278 4.17959 4.24843 4.41825 4.45707 4.51107 4.57839 4.66060 4.72763 4.78176 4.81098 4.84631 4.92673 4.96635 5.01881 5.07096 5.15920 5.19481 5.22730 5.31362 5.35225 5.42211 5.47163 5.58687 5.63183 5.87579 5.96747 6.22601 6.31827 6.46800 6.80116 6.84206 7.07253 7.42955 8.92466 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022658 B = 0.003156 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.493583 B = 8869.791604 C = 9099.921247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.228 3.772 3 N -0.523 5.523 4 C 0.354 3.646 5 C -0.027 4.027 6 C -0.136 4.136 7 C -0.137 4.137 8 N -0.535 5.535 9 C 0.398 3.602 10 O -0.476 6.476 11 C -0.259 4.259 12 C 0.572 3.428 13 O -0.577 6.577 14 N -0.589 5.589 15 C 0.112 3.888 16 C -0.124 4.124 17 C -0.104 4.104 18 C 0.042 3.958 19 H -0.005 1.005 20 C -0.536 4.536 21 H 0.062 0.938 22 C 0.013 3.987 23 N -0.913 5.913 24 Si 0.955 3.045 25 H -0.268 1.268 26 H -0.289 1.289 27 H -0.269 1.269 28 C 0.126 3.874 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.093 0.907 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.093 0.907 38 H 0.057 0.943 39 H 0.428 0.572 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.101 0.899 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.260 0.740 47 H 0.082 0.918 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.844 17.945 3.134 22.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.082 3.918 3 N -0.239 5.239 4 C 0.088 3.912 5 C -0.047 4.047 6 C -0.194 4.194 7 C -0.195 4.195 8 N -0.260 5.260 9 C 0.210 3.790 10 O -0.287 6.287 11 C -0.269 4.269 12 C 0.358 3.642 13 O -0.458 6.458 14 N -0.319 5.319 15 C -0.010 4.010 16 C -0.162 4.162 17 C -0.142 4.142 18 C 0.022 3.978 19 H 0.013 0.987 20 C -0.574 4.574 21 H 0.080 0.920 22 C -0.187 4.187 23 N -0.551 5.551 24 Si 0.780 3.220 25 H -0.193 1.193 26 H -0.215 1.215 27 H -0.194 1.194 28 C 0.005 3.995 29 H 0.124 0.876 30 H 0.079 0.921 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.112 0.888 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.112 0.888 38 H 0.076 0.924 39 H 0.292 0.708 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.119 0.881 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.100 0.900 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 13.101 18.413 3.000 22.796 hybrid contribution -1.003 -2.504 -0.890 2.840 sum 12.097 15.909 2.109 20.097 Atomic orbital electron populations 1.20927 0.86177 1.04582 1.05130 1.21963 0.98249 0.85691 0.85851 1.68253 1.09756 1.28550 1.17364 1.23930 0.86014 0.94734 0.86545 1.20264 0.97564 0.88206 0.98708 1.21786 0.99089 1.03785 0.94779 1.21790 0.99086 1.03836 0.94779 1.67880 1.42043 0.97784 1.18276 1.19399 0.85140 0.86364 0.88109 1.84568 1.72238 1.35853 1.36004 1.21668 0.95590 0.96183 1.13435 1.17931 0.78486 0.83960 0.83866 1.90804 1.56333 1.66437 1.32183 1.48420 1.55370 1.22427 1.05708 1.21893 0.97984 0.97668 0.83496 1.21989 0.95961 0.97716 1.00497 1.21518 0.99756 0.95624 0.97310 1.18873 0.91654 0.95120 0.92106 0.98676 1.21465 1.38627 1.04206 0.93133 0.91982 1.25835 0.96332 1.01385 0.95110 1.70045 1.47158 1.39571 0.98365 0.85661 0.79207 0.80119 0.76985 1.19342 1.21526 1.19434 1.21835 0.92768 0.80929 1.04002 0.87588 0.92130 0.87015 0.86948 0.88802 0.93144 0.92493 0.93394 0.88780 0.92378 0.70796 0.90526 0.90617 0.92187 0.88087 0.92356 0.92596 0.93082 0.89969 0.94395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.05 9.85 71.24 0.70 -2.34 16 2 C 0.23 6.78 6.73 42.87 0.29 7.07 16 3 N -0.52 -13.91 10.21 -175.17 -1.79 -15.70 16 4 C 0.35 8.62 6.34 138.73 0.88 9.50 16 5 C -0.03 -0.44 3.25 -11.54 -0.04 -0.48 16 6 C -0.14 -1.87 9.08 71.98 0.65 -1.22 16 7 C -0.14 -1.90 9.08 71.98 0.65 -1.25 16 8 N -0.53 -14.31 9.79 -299.86 -2.93 -17.24 16 9 C 0.40 11.90 7.85 85.19 0.67 12.57 16 10 O -0.48 -13.17 13.10 -85.62 -1.12 -14.29 16 11 C -0.26 -8.63 3.67 -19.83 -0.07 -8.70 16 12 C 0.57 23.62 5.40 86.69 0.47 24.09 16 13 O -0.58 -29.18 16.52 -3.99 -0.07 -29.24 16 14 N -0.59 -23.90 2.97 -821.93 -2.44 -26.34 16 15 C 0.11 3.52 6.37 86.51 0.55 4.07 16 16 C -0.12 -3.68 6.10 30.82 0.19 -3.49 16 17 C -0.10 -3.93 5.10 30.62 0.16 -3.77 16 18 C 0.04 2.04 2.25 -11.48 -0.03 2.01 16 19 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 20 C -0.54 -28.82 8.56 25.60 0.22 -28.60 16 21 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 22 C 0.01 0.72 5.30 84.66 0.45 1.17 16 23 N -0.91 -54.20 11.39 21.45 0.24 -53.95 16 24 Si 0.95 43.57 29.54 68.60 2.03 45.60 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 27 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 28 C 0.13 6.20 5.40 86.35 0.47 6.67 16 29 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.06 2.06 7.18 -2.39 -0.02 2.04 16 31 H 0.11 2.50 8.14 -2.38 -0.02 2.48 16 32 H 0.11 1.58 8.09 -2.39 -0.02 1.56 16 33 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.06 0.93 8.00 -2.39 -0.02 0.91 16 36 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.06 0.93 8.00 -2.39 -0.02 0.91 16 39 H 0.43 8.43 9.06 -74.05 -0.67 7.76 16 40 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.08 2.18 6.23 -2.39 -0.01 2.16 16 42 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 43 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 45 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 47 H 0.08 4.80 5.12 -2.39 -0.01 4.79 16 48 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -71.49 388.76 0.43 -71.06 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 0.30 Total: 22.80 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: 6.21 Total: 17.31 kcal Atomic # 7 Polarization: -106.32 SS G_CDS: -6.92 Total: -113.24 kcal Atomic # 8 Polarization: -42.34 SS G_CDS: -1.19 Total: -43.53 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -71.49 0.43 -71.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855255150.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.771 kcal (2) G-P(sol) polarization free energy of solvation -71.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds