Wall clock time and date at job start Tue Mar 31 2020 18:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32220 * 120.51183 * 2 1 4 4 C 1.31911 * 121.14478 * 180.26441 * 3 2 1 5 5 C 1.50694 * 118.90304 * 179.75281 * 4 3 2 6 6 C 1.52998 * 109.46935 * 119.98402 * 5 4 3 7 7 C 1.52999 * 109.47215 * 239.98565 * 5 4 3 8 8 N 1.31755 * 122.19438 * 359.73741 * 4 3 2 9 9 C 1.32753 * 120.86915 * 359.97438 * 8 4 3 10 10 O 1.35283 * 120.61415 * 180.02562 * 9 8 4 11 11 C 1.39768 * 120.51167 * 179.74637 * 2 1 3 12 12 C 1.47539 * 120.97591 * 0.02562 * 11 2 1 13 13 O 1.21593 * 120.00101 * 269.71958 * 12 11 2 14 14 N 1.34775 * 120.00312 * 89.72255 * 12 11 2 15 15 C 1.46931 * 120.62591 * 359.97438 * 14 12 11 16 16 C 1.53186 * 108.77754 * 233.61170 * 15 14 12 17 17 C 1.53039 * 109.31322 * 305.36834 * 16 15 14 18 18 C 1.53045 * 109.53982 * 61.36694 * 17 16 15 19 19 H 1.09000 * 109.49695 * 58.61728 * 18 17 16 20 20 C 1.50701 * 109.49976 * 178.68633 * 18 17 16 21 21 H 1.08002 * 119.99761 * 359.92632 * 20 18 17 22 22 C 1.37871 * 119.99694 * 180.21195 * 20 18 17 23 23 N 1.31514 * 120.00482 * 359.71466 * 22 20 18 24 24 Si 1.86801 * 119.99746 * 179.72062 * 22 20 18 25 25 H 1.48504 * 109.47209 * 89.99886 * 24 22 20 26 26 H 1.48501 * 109.47358 * 209.99377 * 24 22 20 27 27 H 1.48496 * 109.47341 * 329.99989 * 24 22 20 28 28 C 1.46934 * 120.60963 * 180.02562 * 14 12 11 29 29 H 1.08997 * 109.46554 * 270.25630 * 1 2 3 30 30 H 1.08996 * 109.47078 * 30.25686 * 1 2 3 31 31 H 1.09000 * 109.47088 * 150.25597 * 1 2 3 32 32 H 1.09002 * 109.47245 * 359.97438 * 5 4 3 33 33 H 1.08990 * 109.47520 * 59.99733 * 6 5 4 34 34 H 1.09007 * 109.46768 * 180.02562 * 6 5 4 35 35 H 1.09001 * 109.47335 * 299.99502 * 6 5 4 36 36 H 1.08993 * 109.47445 * 59.99724 * 7 5 4 37 37 H 1.08998 * 109.47071 * 180.02562 * 7 5 4 38 38 H 1.09002 * 109.46888 * 300.00064 * 7 5 4 39 39 H 0.96694 * 113.99947 * 269.98326 * 10 9 8 40 40 H 1.09006 * 109.58242 * 113.82597 * 15 14 12 41 41 H 1.08994 * 109.58802 * 353.40174 * 15 14 12 42 42 H 1.09001 * 109.50125 * 185.41855 * 16 15 14 43 43 H 1.09001 * 109.52498 * 65.33696 * 16 15 14 44 44 H 1.08999 * 109.46233 * 301.34303 * 17 16 15 45 45 H 1.09007 * 109.45233 * 181.37749 * 17 16 15 46 46 H 0.96995 * 120.00207 * 179.97438 * 23 22 20 47 47 H 1.09003 * 109.61141 * 6.61608 * 28 14 12 48 48 H 1.08998 * 109.55491 * 246.19355 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1391 0.0000 4 6 3.4973 1.1537 -0.0052 5 6 4.2110 2.4809 -0.0106 6 6 5.0924 2.5910 1.2351 7 6 5.0832 2.5859 -1.2633 8 7 4.2116 0.0465 -0.0055 9 6 3.6234 -1.1435 0.0000 10 8 4.3618 -2.2770 0.0001 11 6 2.2166 -1.2041 0.0053 12 6 1.5124 -2.5006 0.0105 13 8 1.2263 -3.0328 1.0656 14 7 1.1861 -3.0950 -1.1543 15 6 1.5247 -2.4639 -2.4372 16 6 0.2528 -2.3549 -3.2840 17 6 -0.3889 -3.7382 -3.4139 18 6 -0.7752 -4.2556 -2.0263 19 1 -1.4665 -3.5558 -1.5566 20 6 -1.4361 -5.6035 -2.1581 21 1 -1.5687 -6.0468 -3.1340 22 6 -1.8767 -6.2681 -1.0334 23 7 -1.7152 -5.7283 0.1550 24 14 -2.7029 -7.9354 -1.1974 25 1 -1.6763 -9.0060 -1.1244 26 1 -3.6824 -8.1131 -0.0954 27 1 -3.4068 -8.0128 -2.5026 28 6 0.4842 -4.3858 -1.1647 29 1 -0.3632 0.0046 1.0277 30 1 -0.3633 0.8876 -0.5178 31 1 -0.3633 -0.8923 -0.5099 32 1 3.4780 3.2876 -0.0098 33 1 5.8253 1.7844 1.2342 34 1 5.6083 3.5513 1.2314 35 1 4.4710 2.5164 2.1276 36 1 4.4554 2.5073 -2.1508 37 1 5.5998 3.5457 -1.2670 38 1 5.8162 1.7791 -1.2643 39 1 4.5728 -2.6091 -0.8832 40 1 2.2613 -3.0732 -2.9610 41 1 1.9312 -1.4685 -2.2588 42 1 0.5063 -1.9771 -4.2745 43 1 -0.4479 -1.6726 -2.8027 44 1 0.3210 -4.4261 -3.8732 45 1 -1.2809 -3.6676 -4.0364 46 1 -2.0256 -6.1958 0.9462 47 1 0.2041 -4.6581 -0.1471 48 1 1.1361 -5.1521 -1.5840 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855255151.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:01 Heat of formation + Delta-G solvation = -43.218447 kcal Electronic energy + Delta-G solvation = -30120.129984 eV Core-core repulsion = 26174.946731 eV Total energy + Delta-G solvation = -3945.183254 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.58519 -39.35731 -37.94969 -36.80614 -35.86494 -33.67802 -33.43487 -31.99179 -31.42742 -29.87144 -28.66319 -27.39823 -25.76305 -25.12530 -24.08163 -23.19517 -21.94582 -20.92668 -20.07909 -19.04612 -18.62954 -18.03073 -17.08460 -16.32037 -16.12811 -15.56160 -15.16662 -14.64698 -14.54824 -14.48418 -14.15794 -13.85106 -13.59658 -13.55606 -13.43499 -12.90402 -12.71775 -12.68398 -12.65318 -12.29312 -12.27119 -12.15952 -11.98711 -11.92209 -11.41812 -11.15843 -11.10574 -11.05012 -10.98009 -10.60338 -10.50842 -10.40655 -10.31981 -9.99499 -9.61753 -9.46163 -9.26912 -9.12765 -8.98464 -8.50580 -7.90262 -6.05688 -4.14676 0.55161 0.82064 2.88308 3.11888 3.27416 3.35429 3.37049 3.40884 3.51360 3.67116 4.10916 4.38229 4.58861 4.72707 4.81194 4.87047 4.92666 5.12675 5.15010 5.24736 5.32076 5.35727 5.41217 5.51079 5.53343 5.56221 5.61650 5.67738 5.71471 5.84284 5.87710 5.98746 6.04130 6.09581 6.16801 6.22119 6.49450 6.55052 6.71858 6.78737 6.87070 7.02765 7.13520 7.20957 7.54875 7.77581 7.90190 7.91494 8.08412 8.30613 8.65131 8.89370 9.51621 10.99665 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022727 B = 0.003154 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.701599 B = 8875.115708 C = 9092.762792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.225 3.775 3 N -0.522 5.522 4 C 0.353 3.647 5 C -0.026 4.026 6 C -0.142 4.142 7 C -0.140 4.140 8 N -0.534 5.534 9 C 0.391 3.609 10 O -0.465 6.465 11 C -0.237 4.237 12 C 0.566 3.434 13 O -0.516 6.516 14 N -0.596 5.596 15 C 0.109 3.891 16 C -0.133 4.133 17 C -0.110 4.110 18 C 0.041 3.959 19 H 0.030 0.970 20 C -0.522 4.522 21 H 0.059 0.941 22 C 0.063 3.937 23 N -0.880 5.880 24 Si 0.892 3.108 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.274 1.274 28 C 0.112 3.888 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.408 0.592 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.050 0.950 45 H 0.053 0.947 46 H 0.264 0.736 47 H 0.124 0.876 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.517 15.865 -4.672 20.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.080 3.920 3 N -0.238 5.238 4 C 0.085 3.915 5 C -0.046 4.046 6 C -0.200 4.200 7 C -0.199 4.199 8 N -0.259 5.259 9 C 0.204 3.796 10 O -0.272 6.272 11 C -0.247 4.247 12 C 0.350 3.650 13 O -0.391 6.391 14 N -0.329 5.329 15 C -0.014 4.014 16 C -0.171 4.171 17 C -0.148 4.148 18 C 0.022 3.978 19 H 0.048 0.952 20 C -0.561 4.561 21 H 0.077 0.923 22 C -0.140 4.140 23 N -0.517 5.517 24 Si 0.720 3.280 25 H -0.206 1.206 26 H -0.212 1.212 27 H -0.199 1.199 28 C -0.007 4.007 29 H 0.113 0.887 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.268 0.732 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.142 0.858 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.754 16.315 -3.312 20.379 hybrid contribution -0.691 -1.922 -0.503 2.104 sum 11.063 14.393 -3.815 18.550 Atomic orbital electron populations 1.20940 0.86724 1.04775 1.04719 1.21818 0.97751 0.85827 0.86632 1.68127 1.09294 1.29550 1.16845 1.23037 0.86076 0.93574 0.88773 1.20014 0.97091 0.90052 0.97472 1.21807 0.99611 1.02664 0.95924 1.21795 0.99600 1.02691 0.95767 1.67710 1.42360 0.98046 1.17800 1.19326 0.85591 0.85670 0.89060 1.84701 1.72565 1.35913 1.34010 1.21939 0.95101 0.97656 1.09976 1.17555 0.79460 0.83235 0.84774 1.90852 1.53535 1.64177 1.30530 1.48533 1.56911 1.23563 1.03864 1.21614 0.97753 0.96670 0.85406 1.21942 0.96689 0.99966 0.98473 1.21636 0.99174 0.93497 1.00511 1.18964 0.92534 0.96783 0.89517 0.95218 1.21052 1.38795 1.03128 0.93084 0.92308 1.25047 0.95602 0.97899 0.95419 1.69866 1.45933 1.38122 0.97791 0.86588 0.79386 0.84277 0.77725 1.20629 1.21180 1.19935 1.22396 0.92565 0.79095 1.06653 0.88735 0.89252 0.89234 0.88278 0.91354 0.91499 0.92674 0.92655 0.91532 0.91407 0.73201 0.91782 0.92254 0.92102 0.92010 0.93086 0.92801 0.92552 0.85780 0.93626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 9.85 36.01 0.35 -1.22 16 2 C 0.23 3.43 6.71 -81.85 -0.55 2.88 16 3 N -0.52 -7.41 10.21 -6.72 -0.07 -7.48 16 4 C 0.35 4.65 6.34 -157.13 -1.00 3.66 16 5 C -0.03 -0.25 3.25 -91.78 -0.30 -0.55 16 6 C -0.14 -1.24 9.08 37.16 0.34 -0.90 16 7 C -0.14 -1.12 9.09 37.16 0.34 -0.78 16 8 N -0.53 -7.58 9.79 -10.47 -0.10 -7.68 16 9 C 0.39 6.02 7.85 -16.18 -0.13 5.90 16 10 O -0.46 -6.62 13.10 -17.54 -0.23 -6.85 16 11 C -0.24 -3.96 3.68 -104.56 -0.38 -4.35 16 12 C 0.57 11.30 5.40 -12.47 -0.07 11.23 16 13 O -0.52 -12.78 16.52 5.28 0.09 -12.69 16 14 N -0.60 -11.26 2.97 -174.01 -0.52 -11.77 16 15 C 0.11 1.60 6.34 -3.71 -0.02 1.58 16 16 C -0.13 -1.98 6.08 -26.61 -0.16 -2.14 16 17 C -0.11 -2.04 5.11 -26.69 -0.14 -2.18 16 18 C 0.04 0.96 2.25 -91.67 -0.21 0.75 16 19 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 20 C -0.52 -13.57 8.56 -34.44 -0.29 -13.87 16 21 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 22 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 23 N -0.88 -24.92 11.40 55.43 0.63 -24.29 16 24 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 27 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 28 C 0.11 2.58 5.40 -3.72 -0.02 2.56 16 29 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.09 1.39 7.18 -51.93 -0.37 1.02 16 32 H 0.10 0.87 8.09 -51.93 -0.42 0.45 16 33 H 0.07 0.67 8.00 -51.93 -0.42 0.25 16 34 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.59 8.00 -51.93 -0.42 0.18 16 39 H 0.41 3.73 9.06 45.56 0.41 4.14 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.79 6.22 -51.93 -0.32 0.46 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 47 H 0.12 3.39 5.13 -51.93 -0.27 3.12 16 48 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 388.73 15.07 5.86 5.86 Total: -1.00 -32.21 388.73 -8.53 -40.74 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -6.84 Total: 4.22 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -2.33 Total: 4.18 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.06 Total: -51.22 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.14 Total: -19.54 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.21 -8.53 -40.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855255151.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.478 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds