Wall clock time and date at job start Tue Mar 31 2020 18:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32220 * 120.51183 * 2 1 4 4 C 1.31911 * 121.14478 * 180.26441 * 3 2 1 5 5 C 1.50694 * 118.90304 * 179.75281 * 4 3 2 6 6 C 1.52998 * 109.46935 * 119.98402 * 5 4 3 7 7 C 1.52999 * 109.47215 * 239.98565 * 5 4 3 8 8 N 1.31755 * 122.19438 * 359.73741 * 4 3 2 9 9 C 1.32753 * 120.86915 * 359.97438 * 8 4 3 10 10 O 1.35283 * 120.61415 * 180.02562 * 9 8 4 11 11 C 1.39768 * 120.51167 * 179.74637 * 2 1 3 12 12 C 1.47539 * 120.97591 * 0.02562 * 11 2 1 13 13 O 1.21593 * 120.00101 * 269.71958 * 12 11 2 14 14 N 1.34775 * 120.00312 * 89.72255 * 12 11 2 15 15 C 1.46931 * 120.62591 * 359.97438 * 14 12 11 16 16 C 1.53186 * 108.77754 * 233.61170 * 15 14 12 17 17 C 1.53039 * 109.31322 * 305.36834 * 16 15 14 18 18 C 1.53045 * 109.53982 * 61.36694 * 17 16 15 19 19 H 1.09000 * 109.49695 * 58.61728 * 18 17 16 20 20 C 1.50701 * 109.49976 * 178.68633 * 18 17 16 21 21 H 1.08002 * 119.99761 * 359.92632 * 20 18 17 22 22 C 1.37871 * 119.99694 * 180.21195 * 20 18 17 23 23 N 1.31514 * 120.00482 * 359.71466 * 22 20 18 24 24 Si 1.86801 * 119.99746 * 179.72062 * 22 20 18 25 25 H 1.48504 * 109.47209 * 89.99886 * 24 22 20 26 26 H 1.48501 * 109.47358 * 209.99377 * 24 22 20 27 27 H 1.48496 * 109.47341 * 329.99989 * 24 22 20 28 28 C 1.46934 * 120.60963 * 180.02562 * 14 12 11 29 29 H 1.08997 * 109.46554 * 270.25630 * 1 2 3 30 30 H 1.08996 * 109.47078 * 30.25686 * 1 2 3 31 31 H 1.09000 * 109.47088 * 150.25597 * 1 2 3 32 32 H 1.09002 * 109.47245 * 359.97438 * 5 4 3 33 33 H 1.08990 * 109.47520 * 59.99733 * 6 5 4 34 34 H 1.09007 * 109.46768 * 180.02562 * 6 5 4 35 35 H 1.09001 * 109.47335 * 299.99502 * 6 5 4 36 36 H 1.08993 * 109.47445 * 59.99724 * 7 5 4 37 37 H 1.08998 * 109.47071 * 180.02562 * 7 5 4 38 38 H 1.09002 * 109.46888 * 300.00064 * 7 5 4 39 39 H 0.96694 * 113.99947 * 269.98326 * 10 9 8 40 40 H 1.09006 * 109.58242 * 113.82597 * 15 14 12 41 41 H 1.08994 * 109.58802 * 353.40174 * 15 14 12 42 42 H 1.09001 * 109.50125 * 185.41855 * 16 15 14 43 43 H 1.09001 * 109.52498 * 65.33696 * 16 15 14 44 44 H 1.08999 * 109.46233 * 301.34303 * 17 16 15 45 45 H 1.09007 * 109.45233 * 181.37749 * 17 16 15 46 46 H 0.96995 * 120.00207 * 179.97438 * 23 22 20 47 47 H 1.09003 * 109.61141 * 6.61608 * 28 14 12 48 48 H 1.08998 * 109.55491 * 246.19355 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1391 0.0000 4 6 3.4973 1.1537 -0.0052 5 6 4.2110 2.4809 -0.0106 6 6 5.0924 2.5910 1.2351 7 6 5.0832 2.5859 -1.2633 8 7 4.2116 0.0465 -0.0055 9 6 3.6234 -1.1435 0.0000 10 8 4.3618 -2.2770 0.0001 11 6 2.2166 -1.2041 0.0053 12 6 1.5124 -2.5006 0.0105 13 8 1.2263 -3.0328 1.0656 14 7 1.1861 -3.0950 -1.1543 15 6 1.5247 -2.4639 -2.4372 16 6 0.2528 -2.3549 -3.2840 17 6 -0.3889 -3.7382 -3.4139 18 6 -0.7752 -4.2556 -2.0263 19 1 -1.4665 -3.5558 -1.5566 20 6 -1.4361 -5.6035 -2.1581 21 1 -1.5687 -6.0468 -3.1340 22 6 -1.8767 -6.2681 -1.0334 23 7 -1.7152 -5.7283 0.1550 24 14 -2.7029 -7.9354 -1.1974 25 1 -1.6763 -9.0060 -1.1244 26 1 -3.6824 -8.1131 -0.0954 27 1 -3.4068 -8.0128 -2.5026 28 6 0.4842 -4.3858 -1.1647 29 1 -0.3632 0.0046 1.0277 30 1 -0.3633 0.8876 -0.5178 31 1 -0.3633 -0.8923 -0.5099 32 1 3.4780 3.2876 -0.0098 33 1 5.8253 1.7844 1.2342 34 1 5.6083 3.5513 1.2314 35 1 4.4710 2.5164 2.1276 36 1 4.4554 2.5073 -2.1508 37 1 5.5998 3.5457 -1.2670 38 1 5.8162 1.7791 -1.2643 39 1 4.5728 -2.6091 -0.8832 40 1 2.2613 -3.0732 -2.9610 41 1 1.9312 -1.4685 -2.2588 42 1 0.5063 -1.9771 -4.2745 43 1 -0.4479 -1.6726 -2.8027 44 1 0.3210 -4.4261 -3.8732 45 1 -1.2809 -3.6676 -4.0364 46 1 -2.0256 -6.1958 0.9462 47 1 0.2041 -4.6581 -0.1471 48 1 1.1361 -5.1521 -1.5840 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855255151.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:00 Heat of formation + Delta-G solvation = -66.550679 kcal Electronic energy + Delta-G solvation = -30121.141746 eV Core-core repulsion = 26174.946731 eV Total energy + Delta-G solvation = -3946.195015 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.76266 -40.85367 -39.07762 -38.40759 -36.82517 -35.32723 -34.66936 -33.59647 -32.64503 -31.53491 -29.86601 -28.03062 -27.27405 -26.76526 -25.43064 -24.30973 -23.50926 -22.13401 -21.34504 -20.26000 -20.04072 -19.23167 -18.66589 -18.02881 -17.48855 -16.96062 -16.52404 -16.18464 -15.76571 -15.53102 -15.29997 -15.21404 -15.15634 -14.65862 -14.54044 -14.39895 -14.33205 -13.86129 -13.84090 -13.55247 -13.53042 -13.27277 -12.94142 -12.90615 -12.87828 -12.74401 -12.33405 -12.26495 -12.14546 -12.10890 -11.88595 -11.84165 -11.66114 -11.52144 -11.21190 -10.97763 -10.82200 -10.60265 -10.54128 -10.40279 -9.53764 -8.11045 -6.27325 -0.60579 -0.33213 1.37811 1.41411 1.42313 1.52225 1.93163 2.09854 2.30355 2.42321 2.62032 2.98995 3.17489 3.31893 3.74515 3.76660 3.91312 3.98099 4.09444 4.15226 4.18296 4.27172 4.40887 4.44805 4.51862 4.58696 4.68600 4.74224 4.79515 4.81312 4.84784 4.92136 4.97798 5.02435 5.08624 5.16393 5.21046 5.24603 5.33047 5.35278 5.43029 5.48688 5.59900 5.63359 5.89208 5.98133 6.27074 6.32177 6.46800 6.80164 6.85109 7.09515 7.43118 8.92210 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022727 B = 0.003154 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.701599 B = 8875.115708 C = 9092.762792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.228 3.772 3 N -0.523 5.523 4 C 0.354 3.646 5 C -0.027 4.027 6 C -0.139 4.139 7 C -0.135 4.135 8 N -0.534 5.534 9 C 0.398 3.602 10 O -0.476 6.476 11 C -0.259 4.259 12 C 0.570 3.430 13 O -0.578 6.578 14 N -0.592 5.592 15 C 0.106 3.894 16 C -0.125 4.125 17 C -0.104 4.104 18 C 0.041 3.959 19 H -0.008 1.008 20 C -0.533 4.533 21 H 0.063 0.937 22 C 0.012 3.988 23 N -0.914 5.914 24 Si 0.954 3.046 25 H -0.276 1.276 26 H -0.290 1.290 27 H -0.263 1.263 28 C 0.126 3.874 29 H 0.091 0.909 30 H 0.117 0.883 31 H 0.067 0.933 32 H 0.112 0.888 33 H 0.055 0.945 34 H 0.095 0.905 35 H 0.043 0.957 36 H 0.053 0.947 37 H 0.092 0.908 38 H 0.058 0.942 39 H 0.429 0.571 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.103 0.897 43 H 0.055 0.945 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.259 0.741 47 H 0.077 0.923 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.076 17.976 -7.031 23.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.082 3.918 3 N -0.239 5.239 4 C 0.088 3.912 5 C -0.047 4.047 6 C -0.197 4.197 7 C -0.193 4.193 8 N -0.259 5.259 9 C 0.210 3.790 10 O -0.287 6.287 11 C -0.268 4.268 12 C 0.356 3.644 13 O -0.458 6.458 14 N -0.322 5.322 15 C -0.016 4.016 16 C -0.163 4.163 17 C -0.141 4.141 18 C 0.021 3.979 19 H 0.010 0.990 20 C -0.572 4.572 21 H 0.081 0.919 22 C -0.188 4.188 23 N -0.553 5.553 24 Si 0.780 3.220 25 H -0.202 1.202 26 H -0.216 1.216 27 H -0.187 1.187 28 C 0.004 3.996 29 H 0.110 0.890 30 H 0.136 0.864 31 H 0.086 0.914 32 H 0.131 0.869 33 H 0.075 0.925 34 H 0.114 0.886 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.292 0.708 40 H 0.108 0.892 41 H 0.099 0.901 42 H 0.122 0.878 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.068 0.932 47 H 0.095 0.905 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 13.337 18.447 -5.750 23.478 hybrid contribution -1.127 -2.516 0.216 2.766 sum 12.210 15.930 -5.535 20.820 Atomic orbital electron populations 1.20928 0.86235 1.05019 1.04653 1.21954 0.98206 0.85703 0.85895 1.68255 1.09764 1.28518 1.17347 1.23930 0.86003 0.94735 0.86551 1.20267 0.97564 0.88194 0.98717 1.21804 0.99088 1.03828 0.94950 1.21776 0.99093 1.03805 0.94598 1.67876 1.41992 0.97778 1.18300 1.19385 0.85123 0.86359 0.88162 1.84652 1.72275 1.35808 1.35990 1.21637 0.95646 0.96123 1.13431 1.17963 0.78578 0.83920 0.83922 1.90811 1.56115 1.66114 1.32733 1.48461 1.55843 1.22341 1.05600 1.21931 0.98436 0.97960 0.83234 1.21906 0.96186 0.97502 1.00705 1.21511 0.99825 0.95774 0.97040 1.18889 0.91684 0.94996 0.92295 0.99014 1.21500 1.38372 1.04238 0.93056 0.91884 1.25846 0.96438 1.01359 0.95151 1.70066 1.47252 1.39558 0.98384 0.85614 0.78359 0.80192 0.77853 1.20212 1.21552 1.18688 1.21827 0.92885 0.81090 1.03761 0.89028 0.86423 0.91384 0.86949 0.92548 0.88627 0.93779 0.92742 0.88963 0.92303 0.70759 0.89207 0.90118 0.87825 0.92645 0.92204 0.92647 0.93181 0.90471 0.93854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.07 9.85 71.24 0.70 -2.36 16 2 C 0.23 6.79 6.71 42.87 0.29 7.08 16 3 N -0.52 -13.89 10.21 -175.17 -1.79 -15.67 16 4 C 0.35 8.60 6.34 138.73 0.88 9.48 16 5 C -0.03 -0.44 3.25 -11.54 -0.04 -0.48 16 6 C -0.14 -2.07 9.08 71.98 0.65 -1.41 16 7 C -0.13 -1.69 9.09 71.98 0.65 -1.03 16 8 N -0.53 -14.27 9.79 -299.85 -2.93 -17.21 16 9 C 0.40 11.90 7.85 85.18 0.67 12.57 16 10 O -0.48 -13.24 13.10 -85.68 -1.12 -14.37 16 11 C -0.26 -8.62 3.68 -19.83 -0.07 -8.69 16 12 C 0.57 23.60 5.40 86.70 0.47 24.06 16 13 O -0.58 -30.58 16.52 -4.01 -0.07 -30.65 16 14 N -0.59 -22.72 2.97 -822.70 -2.45 -25.17 16 15 C 0.11 2.90 6.34 86.36 0.55 3.44 16 16 C -0.13 -3.42 6.08 30.67 0.19 -3.23 16 17 C -0.10 -3.72 5.11 30.62 0.16 -3.56 16 18 C 0.04 1.94 2.25 -11.47 -0.03 1.92 16 19 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 20 C -0.53 -28.31 8.56 25.60 0.22 -28.09 16 21 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 22 C 0.01 0.64 5.31 84.65 0.45 1.09 16 23 N -0.91 -54.54 11.40 21.45 0.24 -54.30 16 24 Si 0.95 43.53 29.54 68.60 2.03 45.56 16 25 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 26 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 27 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 28 C 0.13 6.03 5.40 86.35 0.47 6.50 16 29 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.07 2.18 7.18 -2.39 -0.02 2.16 16 32 H 0.11 1.58 8.09 -2.39 -0.02 1.56 16 33 H 0.06 0.99 8.00 -2.39 -0.02 0.97 16 34 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.06 0.86 8.00 -2.39 -0.02 0.84 16 39 H 0.43 7.23 9.06 -74.06 -0.67 6.56 16 40 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 41 H 0.08 1.92 6.22 -2.39 -0.01 1.91 16 42 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 46 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 47 H 0.08 4.51 5.13 -2.39 -0.01 4.50 16 48 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -74.76 388.73 0.42 -74.34 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.30 Total: 20.18 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: 6.20 Total: 17.28 kcal Atomic # 7 Polarization: -105.42 SS G_CDS: -6.93 Total: -112.35 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -1.19 Total: -45.01 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -74.76 0.42 -74.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855255151.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.792 kcal (2) G-P(sol) polarization free energy of solvation -74.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds