Wall clock time and date at job start Tue Mar 31 2020 18:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32154 * 120.54074 * 2 1 4 4 C 1.31862 * 120.97515 * 179.97438 * 3 2 1 5 5 C 1.50699 * 118.94205 * 179.97438 * 4 3 2 6 6 C 1.53008 * 109.46774 * 120.00206 * 5 4 3 7 7 C 1.53000 * 109.47074 * 239.99620 * 5 4 3 8 8 N 1.31887 * 122.10704 * 0.27598 * 4 3 2 9 9 C 1.32123 * 120.97185 * 359.43798 * 8 4 3 10 10 C 1.39982 * 120.54468 * 179.97438 * 2 1 3 11 11 C 1.47709 * 120.94273 * 0.02562 * 10 2 1 12 12 O 1.21475 * 119.99929 * 4.54071 * 11 10 2 13 13 O 1.34710 * 120.00023 * 184.54081 * 11 10 2 14 14 C 1.45206 * 117.00093 * 180.02562 * 13 11 10 15 15 C 1.53043 * 109.45782 * 270.06644 * 14 13 11 16 16 C 1.53194 * 109.30994 * 178.61183 * 15 14 13 17 17 N 1.46931 * 108.77420 * 54.63736 * 16 15 14 18 18 C 1.36938 * 120.62691 * 126.40939 * 17 16 15 19 19 H 1.07997 * 120.00291 * 326.43430 * 18 17 16 20 20 C 1.38819 * 119.99443 * 146.43249 * 18 17 16 21 21 N 1.31613 * 119.99879 * 347.82753 * 20 18 17 22 22 Si 1.86795 * 119.99489 * 167.82898 * 20 18 17 23 23 H 1.48496 * 109.47731 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47068 * 120.00126 * 22 20 18 25 25 H 1.48503 * 109.46972 * 239.99506 * 22 20 18 26 26 C 1.46921 * 118.73628 * 306.39015 * 17 16 15 27 27 C 1.53042 * 109.46097 * 149.99872 * 14 13 11 28 28 H 1.09001 * 109.47078 * 96.76524 * 1 2 3 29 29 H 1.09002 * 109.47041 * 216.75485 * 1 2 3 30 30 H 1.08992 * 109.47551 * 336.76057 * 1 2 3 31 31 H 1.08999 * 109.47233 * 359.97438 * 5 4 3 32 32 H 1.08999 * 109.47431 * 59.99888 * 6 5 4 33 33 H 1.08995 * 109.46883 * 299.99780 * 6 5 4 34 34 H 1.09001 * 109.46619 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.47239 * 300.00775 * 7 5 4 36 36 H 1.09002 * 109.46668 * 60.00573 * 7 5 4 37 37 H 1.09001 * 109.47205 * 179.97438 * 7 5 4 38 38 H 1.08000 * 120.54376 * 180.27993 * 9 8 4 39 39 H 1.08999 * 109.46112 * 30.02465 * 14 13 11 40 40 H 1.08992 * 109.49916 * 298.56456 * 15 14 13 41 41 H 1.09003 * 109.49835 * 58.66606 * 15 14 13 42 42 H 1.09002 * 109.59002 * 294.84584 * 16 15 14 43 43 H 1.09005 * 109.70099 * 174.49112 * 16 15 14 44 44 H 0.96996 * 119.99795 * 180.02562 * 21 20 18 45 45 H 1.09004 * 109.58754 * 293.81713 * 26 17 16 46 46 H 1.08999 * 109.70341 * 173.46844 * 26 17 16 47 47 H 1.08996 * 109.49373 * 301.33625 * 27 14 13 48 48 H 1.09002 * 109.49612 * 61.40176 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1382 0.0000 4 6 3.4971 1.1482 0.0005 5 6 4.2164 2.4725 -0.0001 6 6 5.0931 2.5771 1.2495 7 6 5.0941 2.5755 -1.2490 8 7 4.2065 0.0364 -0.0043 9 6 3.6173 -1.1462 0.0011 10 6 2.2184 -1.2056 0.0005 11 6 1.5133 -2.5035 0.0006 12 8 0.3019 -2.5366 -0.0832 13 8 2.2136 -3.6505 0.0934 14 6 1.4549 -4.8886 0.0868 15 6 1.0856 -5.2678 1.5228 16 6 0.2559 -6.5556 1.5092 17 7 1.0036 -7.5922 0.7845 18 6 1.2465 -8.8097 1.3623 19 1 1.4057 -8.8795 2.4282 20 6 1.2881 -9.9543 0.5778 21 7 0.8629 -9.9146 -0.6671 22 14 1.9475 -11.5506 1.2893 23 1 2.3597 -11.3314 2.6990 24 1 0.8880 -12.5899 1.2388 25 1 3.1194 -11.9995 0.4954 26 6 1.4852 -7.2978 -0.5719 27 6 2.3011 -6.0018 -0.5351 28 1 -0.3633 -0.1211 -1.0205 29 1 -0.3633 -0.8234 0.6150 30 1 -0.3634 0.9442 0.4054 31 1 3.4867 3.2822 -0.0014 32 1 5.8228 1.7674 1.2503 33 1 4.4678 2.5037 2.1392 34 1 5.6137 3.5348 1.2488 35 1 5.8237 1.7657 -1.2482 36 1 4.4695 2.5009 -2.1392 37 1 5.6140 3.5335 -1.2497 38 1 4.2051 -2.0522 0.0016 39 1 0.5453 -4.7539 -0.4984 40 1 1.9949 -5.4270 2.1023 41 1 0.5027 -4.4643 1.9729 42 1 -0.6945 -6.3726 1.0079 43 1 0.0721 -6.8851 2.5318 44 1 0.8916 -10.7144 -1.2151 45 1 0.6351 -7.1754 -1.2431 46 1 2.1140 -8.1155 -0.9242 47 1 2.5833 -5.7205 -1.5496 48 1 3.1993 -6.1537 0.0635 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892864175.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:30 Heat of formation + Delta-G solvation = -31.957099 kcal Electronic energy + Delta-G solvation = -28635.942966 eV Core-core repulsion = 24691.248041 eV Total energy + Delta-G solvation = -3944.694925 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.71946 -40.19471 -37.63850 -36.23424 -35.85656 -34.53571 -32.81497 -32.15616 -30.41840 -29.76277 -28.96284 -27.53884 -25.92146 -25.03459 -23.64878 -22.78733 -22.23895 -21.27696 -20.55396 -19.40532 -18.50988 -17.63020 -17.00222 -16.43017 -16.38379 -16.14383 -15.22868 -14.89481 -14.66621 -14.41499 -14.19261 -13.71197 -13.62055 -13.58668 -13.40094 -13.09535 -13.01026 -12.89607 -12.72059 -12.51639 -12.46674 -12.23313 -11.60733 -11.58086 -11.54729 -11.32245 -11.29534 -11.13495 -10.86014 -10.83383 -10.75442 -10.45746 -10.21770 -10.20509 -9.99285 -9.82101 -9.68866 -9.60118 -9.50968 -8.55453 -6.69499 -5.86558 -3.35738 0.05548 0.71766 2.40183 2.62014 3.33229 3.38391 3.38630 3.41252 3.43418 3.67044 4.07065 4.43115 4.43761 4.53341 4.61871 4.71938 4.75768 5.12870 5.18718 5.25537 5.28422 5.29888 5.36446 5.38271 5.42555 5.47518 5.47704 5.51981 5.59334 5.65735 5.77778 5.84817 5.91148 5.97419 6.05578 6.17195 6.25269 6.35323 6.44244 6.51792 6.59963 6.68973 6.75707 6.90110 7.21767 7.51265 7.67854 7.74764 7.77403 8.41040 9.14188 9.74596 10.34156 11.22650 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025151 B = 0.002251 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.019845 B =12433.926303 C =12936.699099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.242 3.758 3 N -0.525 5.525 4 C 0.352 3.648 5 C -0.030 4.030 6 C -0.142 4.142 7 C -0.142 4.142 8 N -0.524 5.524 9 C 0.213 3.787 10 C -0.240 4.240 11 C 0.516 3.484 12 O -0.496 6.496 13 O -0.352 6.352 14 C 0.101 3.899 15 C -0.146 4.146 16 C 0.149 3.851 17 N -0.592 5.592 18 C -0.257 4.257 19 H 0.065 0.935 20 C 0.007 3.993 21 N -0.902 5.902 22 Si 0.905 3.095 23 H -0.276 1.276 24 H -0.289 1.289 25 H -0.288 1.288 26 C 0.177 3.823 27 C -0.136 4.136 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.067 0.933 38 H 0.186 0.814 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.022 0.978 43 H 0.061 0.939 44 H 0.255 0.745 45 H 0.024 0.976 46 H 0.091 0.909 47 H 0.058 0.942 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.088 24.182 0.137 24.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.096 3.904 3 N -0.240 5.240 4 C 0.086 3.914 5 C -0.050 4.050 6 C -0.200 4.200 7 C -0.200 4.200 8 N -0.238 5.238 9 C 0.047 3.953 10 C -0.246 4.246 11 C 0.359 3.641 12 O -0.386 6.386 13 O -0.268 6.268 14 C 0.047 3.953 15 C -0.186 4.186 16 C 0.022 3.978 17 N -0.314 5.314 18 C -0.387 4.387 19 H 0.083 0.917 20 C -0.192 4.192 21 N -0.546 5.546 22 Si 0.734 3.266 23 H -0.201 1.201 24 H -0.216 1.216 25 H -0.215 1.215 26 C 0.051 3.949 27 C -0.175 4.175 28 H 0.111 0.889 29 H 0.126 0.874 30 H 0.097 0.903 31 H 0.116 0.884 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.203 0.797 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.040 0.960 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.042 0.958 46 H 0.110 0.890 47 H 0.077 0.923 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.175 24.834 -0.002 25.590 hybrid contribution -0.238 -1.777 0.226 1.807 sum 5.937 23.057 0.224 23.810 Atomic orbital electron populations 1.21154 0.86361 1.04743 1.04960 1.22030 0.98173 0.86188 0.84022 1.68317 1.09518 1.29275 1.16907 1.23524 0.86511 0.94976 0.86415 1.20070 0.97122 0.90131 0.97707 1.21806 0.99585 1.02940 0.95626 1.21807 0.99588 1.02935 0.95626 1.68297 1.41067 0.98289 1.16163 1.23780 0.90851 0.96603 0.84104 1.20884 0.96477 0.93370 1.13869 1.20469 0.85737 0.84574 0.73347 1.90789 1.14534 1.87645 1.45616 1.86580 1.42422 1.15175 1.82642 1.23035 0.95070 0.78616 0.98548 1.22483 1.01507 0.99699 0.94900 1.20877 0.92511 0.87370 0.97021 1.44057 1.61176 1.11844 1.14354 1.19185 1.43279 0.83284 0.92957 0.91714 1.25236 0.99447 0.97805 0.96721 1.69984 1.48400 1.28353 1.07844 0.86190 0.78308 0.83448 0.78616 1.20139 1.21576 1.21466 1.20753 0.95555 0.91981 0.86626 1.22491 1.00091 0.95591 0.99373 0.88860 0.87414 0.90267 0.88372 0.91190 0.92681 0.91355 0.91176 0.92710 0.91359 0.79740 0.90032 0.91327 0.92642 0.95999 0.92025 0.93496 0.95829 0.89046 0.92329 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 9.00 36.00 0.32 -0.90 16 2 C 0.24 2.95 6.87 -81.80 -0.56 2.39 16 3 N -0.53 -6.27 10.22 -6.66 -0.07 -6.34 16 4 C 0.35 3.86 6.34 -157.06 -1.00 2.87 16 5 C -0.03 -0.24 3.25 -91.77 -0.30 -0.54 16 6 C -0.14 -0.97 9.09 37.16 0.34 -0.63 16 7 C -0.14 -0.97 9.08 37.16 0.34 -0.63 16 8 N -0.52 -5.97 9.77 -10.38 -0.10 -6.08 16 9 C 0.21 2.45 10.90 -16.76 -0.18 2.26 16 10 C -0.24 -3.06 5.91 -104.71 -0.62 -3.67 16 11 C 0.52 7.60 7.84 34.60 0.27 7.87 16 12 O -0.50 -8.04 12.77 -19.25 -0.25 -8.29 16 13 O -0.35 -5.48 9.24 -40.52 -0.37 -5.85 16 14 C 0.10 1.77 2.42 -26.69 -0.06 1.71 16 15 C -0.15 -2.62 5.72 -26.61 -0.15 -2.78 16 16 C 0.15 3.11 6.52 -3.71 -0.02 3.09 16 17 N -0.59 -14.54 2.97 -172.32 -0.51 -15.05 16 18 C -0.26 -6.91 9.55 -15.06 -0.14 -7.06 16 19 H 0.07 1.72 7.86 -52.49 -0.41 1.30 16 20 C 0.01 0.20 5.00 -17.43 -0.09 0.11 16 21 N -0.90 -25.65 11.31 55.49 0.63 -25.02 16 22 Si 0.90 21.26 29.57 -169.99 -5.03 16.23 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 C 0.18 4.09 5.24 -3.72 -0.02 4.07 16 27 C -0.14 -2.54 5.74 -26.61 -0.15 -2.69 16 28 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.11 1.27 5.94 -51.93 -0.31 0.96 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.10 0.72 8.09 -51.93 -0.42 0.30 16 32 H 0.07 0.53 8.01 -51.93 -0.42 0.12 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.53 8.00 -51.93 -0.42 0.12 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.19 1.80 7.72 -52.49 -0.41 1.39 16 39 H 0.08 1.52 7.16 -51.93 -0.37 1.15 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 44 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.09 2.34 6.34 -51.93 -0.33 2.01 16 47 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 388.70 15.07 5.86 5.86 Total: -1.00 -29.92 388.70 -9.57 -39.50 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -7.70 Total: -0.42 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -2.03 Total: 5.46 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: -0.05 Total: -52.49 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.62 Total: -14.14 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.92 -9.57 -39.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892864175.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.540 kcal (2) G-P(sol) polarization free energy of solvation -29.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds