Wall clock time and date at job start Tue Mar 31 2020 17:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37988 * 120.82623 * 2 1 4 4 C 1.39124 * 119.26541 * 180.27851 * 3 2 1 5 5 O 1.35506 * 119.52325 * 179.69882 * 4 3 2 6 6 N 1.32436 * 120.94949 * 359.72142 * 4 3 2 7 7 C 1.31633 * 121.80188 * 359.97438 * 6 4 3 8 8 C 1.39560 * 120.62478 * 0.02654 * 7 6 4 9 9 C 1.47616 * 120.49967 * 179.97438 * 8 7 6 10 10 O 1.21588 * 119.99830 * 174.02712 * 9 8 7 11 11 N 1.34775 * 119.99909 * 354.02685 * 9 8 7 12 12 C 1.46500 * 119.99987 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.44789 * 34.96253 * 12 11 9 14 14 C 1.53042 * 109.45855 * 274.99976 * 12 11 9 15 15 C 1.53193 * 109.31330 * 178.61261 * 14 12 11 16 16 N 1.46929 * 108.77164 * 54.63314 * 15 14 12 17 17 C 1.36938 * 120.62785 * 126.37360 * 16 15 14 18 18 H 1.08005 * 119.99766 * 328.37576 * 17 16 15 19 19 C 1.38811 * 120.00149 * 148.38234 * 17 16 15 20 20 N 1.31618 * 119.99992 * 334.23238 * 19 17 16 21 21 Si 1.86801 * 119.99999 * 154.23181 * 19 17 16 22 22 H 1.48503 * 109.47215 * 89.99925 * 21 19 17 23 23 H 1.48499 * 109.47236 * 209.99768 * 21 19 17 24 24 H 1.48497 * 109.47382 * 330.00170 * 21 19 17 25 25 C 1.46920 * 118.73931 * 306.64202 * 16 15 14 26 26 C 1.52759 * 109.00958 * 53.31374 * 25 16 15 27 27 C 1.52995 * 109.56544 * 185.54971 * 26 25 16 28 28 C 1.52994 * 109.36052 * 65.49457 * 26 25 16 29 29 H 1.09008 * 109.47186 * 265.47603 * 1 2 3 30 30 H 1.08999 * 109.46913 * 25.46969 * 1 2 3 31 31 H 1.09002 * 109.47581 * 145.47256 * 1 2 3 32 32 H 1.08001 * 120.36833 * 0.02562 * 3 2 1 33 33 H 0.96692 * 113.99998 * 270.02008 * 5 4 3 34 34 H 1.07996 * 119.69080 * 179.97438 * 7 6 4 35 35 H 0.96994 * 119.99815 * 359.97438 * 11 9 8 36 36 H 1.08999 * 109.50016 * 58.66183 * 14 12 11 37 37 H 1.08994 * 109.52370 * 298.58125 * 14 12 11 38 38 H 1.09002 * 109.58806 * 294.85011 * 15 14 12 39 39 H 1.08997 * 109.58825 * 174.42253 * 15 14 12 40 40 H 0.96995 * 119.99954 * 354.18125 * 20 19 17 41 41 H 1.09005 * 109.58357 * 173.14667 * 25 16 15 42 42 H 1.08993 * 109.58973 * 293.56688 * 25 16 15 43 43 H 1.09001 * 109.47071 * 179.97438 * 27 26 25 44 44 H 1.08993 * 109.47380 * 299.96365 * 27 26 25 45 45 H 1.09008 * 109.47221 * 59.96563 * 27 26 25 46 46 H 1.09002 * 109.47688 * 300.16003 * 28 26 25 47 47 H 1.09008 * 109.47068 * 60.16370 * 28 26 25 48 48 H 1.09002 * 109.47496 * 180.15988 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1849 0.0000 4 6 3.6048 1.1471 -0.0059 5 8 4.3044 2.3075 -0.0121 6 7 4.2547 -0.0069 -0.0060 7 6 3.6204 -1.1603 0.0000 8 6 2.2255 -1.2045 0.0061 9 6 1.5170 -2.4995 0.0122 10 8 0.3069 -2.5299 0.1271 11 7 2.2115 -3.6481 -0.1095 12 6 1.5083 -4.9333 -0.1040 13 1 0.5434 -4.8212 -0.5986 14 6 1.2907 -5.3892 1.3406 15 6 0.5248 -6.7160 1.3433 16 7 1.2507 -7.6827 0.5082 17 6 1.6035 -8.9085 1.0063 18 1 1.8332 -9.0191 2.0558 19 6 1.6660 -10.0088 0.1624 20 7 0.9406 -10.0382 -0.9355 21 14 2.7796 -11.4478 0.5848 22 1 2.0278 -12.4316 1.4047 23 1 3.2439 -12.0985 -0.6668 24 1 3.9525 -10.9575 1.3523 25 6 1.5961 -7.3068 -0.8695 26 6 2.3452 -5.9756 -0.8492 27 6 2.5898 -5.5034 -2.2837 28 6 3.6860 -6.1589 -0.1355 29 1 -0.3634 -0.0811 1.0245 30 1 -0.3633 0.9278 -0.4419 31 1 -0.3634 -0.8466 -0.5825 32 1 1.6937 2.1313 0.0004 33 1 4.5033 2.6421 -0.8972 34 1 4.1847 -2.0811 -0.0007 35 1 3.1767 -3.6238 -0.2015 36 1 0.7145 -4.6355 1.8772 37 1 2.2557 -5.5252 1.8289 38 1 -0.4752 -6.5615 0.9381 39 1 0.4537 -7.0948 2.3629 40 1 0.3002 -9.3315 -1.1127 41 1 2.2317 -8.0754 -1.3095 42 1 0.6854 -7.2015 -1.4588 43 1 3.1239 -4.5533 -2.2674 44 1 3.1859 -6.2460 -2.8140 45 1 1.6340 -5.3744 -2.7918 46 1 3.5109 -6.4967 0.8859 47 1 4.2818 -6.9014 -0.6666 48 1 4.2209 -5.2093 -0.1175 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941027589.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:21 Heat of formation + Delta-G solvation = -24.562266 kcal Electronic energy + Delta-G solvation = -29765.911145 eV Core-core repulsion = 25821.536884 eV Total energy + Delta-G solvation = -3944.374261 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.20793 -39.92647 -38.42252 -37.26059 -35.02986 -34.06533 -33.08943 -32.22366 -30.90417 -29.19789 -28.14680 -26.91281 -26.14273 -25.20055 -24.29243 -22.74143 -22.12979 -20.81585 -20.57831 -18.89972 -18.61035 -17.71947 -17.47244 -16.99543 -16.20918 -15.71495 -15.24828 -15.11712 -14.64687 -14.47261 -13.99303 -13.82138 -13.65841 -13.58679 -13.39886 -13.24759 -13.01209 -12.86959 -12.70184 -12.62148 -12.45955 -12.03748 -11.93483 -11.60100 -11.53609 -10.97582 -10.95614 -10.71609 -10.47145 -10.37128 -10.18033 -10.09650 -10.07790 -9.93374 -9.81359 -9.56897 -9.36930 -9.27558 -8.78633 -8.35562 -6.87201 -6.08688 -3.28100 0.21903 0.78453 2.60543 3.10954 3.16628 3.47997 3.48504 3.51773 3.67138 4.13014 4.31836 4.43518 4.57123 4.68708 4.83496 5.01829 5.09666 5.10752 5.26536 5.32278 5.38567 5.40377 5.49614 5.50428 5.69052 5.73809 5.79923 5.91448 5.94876 5.98392 6.05684 6.13892 6.19420 6.27003 6.32530 6.36217 6.49999 6.53546 6.71143 6.76166 6.79394 6.85226 7.01003 7.03705 7.10241 7.42266 7.52748 8.03937 8.18454 8.57160 9.10247 9.82353 10.28981 11.18723 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024549 B = 0.002775 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.284341 B =10089.327980 C =10549.298861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.034 3.966 3 C -0.198 4.198 4 C 0.332 3.668 5 O -0.481 6.481 6 N -0.511 5.511 7 C 0.165 3.835 8 C -0.200 4.200 9 C 0.561 3.439 10 O -0.530 6.530 11 N -0.713 5.713 12 C 0.165 3.835 13 H 0.083 0.917 14 C -0.143 4.143 15 C 0.149 3.851 16 N -0.594 5.594 17 C -0.350 4.350 18 H 0.053 0.947 19 C -0.019 4.019 20 N -0.911 5.911 21 Si 1.062 2.938 22 H -0.294 1.294 23 H -0.286 1.286 24 H -0.292 1.292 25 C 0.170 3.830 26 C -0.092 4.092 27 C -0.137 4.137 28 C -0.129 4.129 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.147 0.853 33 H 0.404 0.596 34 H 0.163 0.837 35 H 0.395 0.605 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.018 0.982 39 H 0.057 0.943 40 H 0.269 0.731 41 H 0.079 0.921 42 H 0.018 0.982 43 H 0.045 0.955 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.072 0.928 47 H 0.054 0.946 48 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.465 21.674 -1.618 22.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.026 3.974 3 C -0.219 4.219 4 C 0.155 3.845 5 O -0.289 6.289 6 N -0.230 5.230 7 C 0.006 3.994 8 C -0.205 4.205 9 C 0.347 3.653 10 O -0.408 6.408 11 N -0.364 5.364 12 C 0.062 3.938 13 H 0.101 0.899 14 C -0.183 4.183 15 C 0.022 3.978 16 N -0.317 5.317 17 C -0.480 4.480 18 H 0.071 0.929 19 C -0.222 4.222 20 N -0.550 5.550 21 Si 0.892 3.108 22 H -0.222 1.222 23 H -0.212 1.212 24 H -0.218 1.218 25 C 0.043 3.957 26 C -0.095 4.095 27 C -0.194 4.194 28 C -0.186 4.186 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.123 0.877 32 H 0.164 0.836 33 H 0.262 0.738 34 H 0.180 0.820 35 H 0.231 0.769 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.036 0.964 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.036 0.964 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.091 0.909 47 H 0.073 0.927 48 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 5.043 20.169 -1.473 20.842 hybrid contribution -0.755 1.709 0.140 1.874 sum 4.288 21.878 -1.333 22.334 Atomic orbital electron populations 1.21157 0.88582 1.04007 1.04400 1.20397 0.97777 0.90569 0.88651 1.21996 0.93686 0.99615 1.06648 1.19365 0.87101 0.85207 0.92855 1.84719 1.76007 1.34107 1.34074 1.67160 1.42027 0.98233 1.15561 1.22723 0.90371 0.95214 0.91123 1.21008 0.95043 0.94910 1.09565 1.17864 0.87060 0.83296 0.77079 1.90739 1.13409 1.87007 1.49680 1.46269 1.10772 1.06148 1.73204 1.21019 0.95721 0.80182 0.96917 0.89859 1.22446 1.01493 0.98901 0.95476 1.20884 0.92868 0.88247 0.95775 1.44072 1.63618 1.13805 1.10244 1.19880 1.46112 0.85701 0.96270 0.92941 1.25849 1.00370 0.99161 0.96840 1.70748 1.21007 1.34435 1.28837 0.83596 0.76086 0.75619 0.75540 1.22163 1.21219 1.21838 1.20848 0.95919 0.91878 0.87090 1.21370 0.96665 0.97377 0.94058 1.21799 1.01324 1.00176 0.96146 1.21771 0.95185 0.99229 1.02431 0.89681 0.91738 0.87709 0.83555 0.73752 0.81979 0.76928 0.92593 0.91687 0.96428 0.92403 0.92013 0.90249 0.96432 0.93574 0.92385 0.92969 0.90862 0.92662 0.95010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.23 8.89 36.00 0.32 -0.91 16 2 C 0.03 0.36 5.95 -103.96 -0.62 -0.26 16 3 C -0.20 -1.78 9.71 -39.34 -0.38 -2.16 16 4 C 0.33 3.32 7.74 -16.96 -0.13 3.19 16 5 O -0.48 -3.90 13.55 -18.21 -0.25 -4.15 16 6 N -0.51 -5.81 10.37 -12.97 -0.13 -5.94 16 7 C 0.16 1.73 10.69 -17.14 -0.18 1.55 16 8 C -0.20 -2.30 5.89 -104.82 -0.62 -2.92 16 9 C 0.56 7.64 7.68 -12.43 -0.10 7.55 16 10 O -0.53 -8.64 13.13 5.29 0.07 -8.57 16 11 N -0.71 -9.29 4.24 -54.78 -0.23 -9.53 16 12 C 0.16 2.65 1.57 -67.89 -0.11 2.54 16 13 H 0.08 1.51 7.57 -51.93 -0.39 1.12 16 14 C -0.14 -2.48 5.31 -26.61 -0.14 -2.63 16 15 C 0.15 3.09 6.52 -3.71 -0.02 3.07 16 16 N -0.59 -14.04 2.23 -172.58 -0.38 -14.42 16 17 C -0.35 -9.36 9.43 -15.06 -0.14 -9.50 16 18 H 0.05 1.43 7.95 -52.48 -0.42 1.01 16 19 C -0.02 -0.53 4.63 -17.43 -0.08 -0.61 16 20 N -0.91 -26.51 12.60 55.49 0.70 -25.81 16 21 Si 1.06 24.59 29.99 -169.99 -5.10 19.49 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 25 C 0.17 3.68 3.43 -3.94 -0.01 3.66 16 26 C -0.09 -1.54 0.56 -154.62 -0.09 -1.62 16 27 C -0.14 -1.97 8.31 37.15 0.31 -1.66 16 28 C -0.13 -2.05 7.82 37.15 0.29 -1.76 16 29 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 30 H 0.06 0.47 8.07 -51.93 -0.42 0.05 16 31 H 0.10 1.25 5.85 -51.93 -0.30 0.95 16 32 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 33 H 0.40 1.15 9.06 45.56 0.41 1.56 16 34 H 0.16 1.35 6.45 -52.49 -0.34 1.01 16 35 H 0.39 4.29 4.75 -40.82 -0.19 4.10 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.06 1.13 6.34 -51.93 -0.33 0.80 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 40 H 0.27 7.94 7.00 -40.82 -0.29 7.65 16 41 H 0.08 1.94 6.64 -51.93 -0.34 1.60 16 42 H 0.02 0.41 7.91 -51.93 -0.41 -0.01 16 43 H 0.05 0.56 7.36 -51.93 -0.38 0.18 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 46 H 0.07 1.34 5.97 -51.93 -0.31 1.03 16 47 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 48 H 0.03 0.40 6.58 -51.93 -0.34 0.05 16 LS Contribution 373.89 15.07 5.63 5.63 Total: -1.00 -32.21 373.89 -7.62 -39.83 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -6.22 Total: 5.93 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -1.70 Total: -2.46 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -0.05 Total: -55.70 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.18 Total: -12.72 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -5.10 Total: 19.49 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.21 -7.62 -39.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941027589.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.269 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds