Wall clock time and date at job start Tue Mar 31 2020 17:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37988 * 120.82623 * 2 1 4 4 C 1.39124 * 119.26541 * 180.27851 * 3 2 1 5 5 O 1.35506 * 119.52325 * 179.69882 * 4 3 2 6 6 N 1.32436 * 120.94949 * 359.72142 * 4 3 2 7 7 C 1.31633 * 121.80188 * 359.97438 * 6 4 3 8 8 C 1.39560 * 120.62478 * 0.02654 * 7 6 4 9 9 C 1.47616 * 120.49967 * 179.97438 * 8 7 6 10 10 O 1.21588 * 119.99830 * 174.02712 * 9 8 7 11 11 N 1.34775 * 119.99909 * 354.02685 * 9 8 7 12 12 C 1.46500 * 119.99987 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.44789 * 34.96253 * 12 11 9 14 14 C 1.53042 * 109.45855 * 274.99976 * 12 11 9 15 15 C 1.53193 * 109.31330 * 178.61261 * 14 12 11 16 16 N 1.46929 * 108.77164 * 54.63314 * 15 14 12 17 17 C 1.36938 * 120.62785 * 126.37360 * 16 15 14 18 18 H 1.08005 * 119.99766 * 328.37576 * 17 16 15 19 19 C 1.38811 * 120.00149 * 148.38234 * 17 16 15 20 20 N 1.31618 * 119.99992 * 334.23238 * 19 17 16 21 21 Si 1.86801 * 119.99999 * 154.23181 * 19 17 16 22 22 H 1.48503 * 109.47215 * 89.99925 * 21 19 17 23 23 H 1.48499 * 109.47236 * 209.99768 * 21 19 17 24 24 H 1.48497 * 109.47382 * 330.00170 * 21 19 17 25 25 C 1.46920 * 118.73931 * 306.64202 * 16 15 14 26 26 C 1.52759 * 109.00958 * 53.31374 * 25 16 15 27 27 C 1.52995 * 109.56544 * 185.54971 * 26 25 16 28 28 C 1.52994 * 109.36052 * 65.49457 * 26 25 16 29 29 H 1.09008 * 109.47186 * 265.47603 * 1 2 3 30 30 H 1.08999 * 109.46913 * 25.46969 * 1 2 3 31 31 H 1.09002 * 109.47581 * 145.47256 * 1 2 3 32 32 H 1.08001 * 120.36833 * 0.02562 * 3 2 1 33 33 H 0.96692 * 113.99998 * 270.02008 * 5 4 3 34 34 H 1.07996 * 119.69080 * 179.97438 * 7 6 4 35 35 H 0.96994 * 119.99815 * 359.97438 * 11 9 8 36 36 H 1.08999 * 109.50016 * 58.66183 * 14 12 11 37 37 H 1.08994 * 109.52370 * 298.58125 * 14 12 11 38 38 H 1.09002 * 109.58806 * 294.85011 * 15 14 12 39 39 H 1.08997 * 109.58825 * 174.42253 * 15 14 12 40 40 H 0.96995 * 119.99954 * 354.18125 * 20 19 17 41 41 H 1.09005 * 109.58357 * 173.14667 * 25 16 15 42 42 H 1.08993 * 109.58973 * 293.56688 * 25 16 15 43 43 H 1.09001 * 109.47071 * 179.97438 * 27 26 25 44 44 H 1.08993 * 109.47380 * 299.96365 * 27 26 25 45 45 H 1.09008 * 109.47221 * 59.96563 * 27 26 25 46 46 H 1.09002 * 109.47688 * 300.16003 * 28 26 25 47 47 H 1.09008 * 109.47068 * 60.16370 * 28 26 25 48 48 H 1.09002 * 109.47496 * 180.15988 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1849 0.0000 4 6 3.6048 1.1471 -0.0059 5 8 4.3044 2.3075 -0.0121 6 7 4.2547 -0.0069 -0.0060 7 6 3.6204 -1.1603 0.0000 8 6 2.2255 -1.2045 0.0061 9 6 1.5170 -2.4995 0.0122 10 8 0.3069 -2.5299 0.1271 11 7 2.2115 -3.6481 -0.1095 12 6 1.5083 -4.9333 -0.1040 13 1 0.5434 -4.8212 -0.5986 14 6 1.2907 -5.3892 1.3406 15 6 0.5248 -6.7160 1.3433 16 7 1.2507 -7.6827 0.5082 17 6 1.6035 -8.9085 1.0063 18 1 1.8332 -9.0191 2.0558 19 6 1.6660 -10.0088 0.1624 20 7 0.9406 -10.0382 -0.9355 21 14 2.7796 -11.4478 0.5848 22 1 2.0278 -12.4316 1.4047 23 1 3.2439 -12.0985 -0.6668 24 1 3.9525 -10.9575 1.3523 25 6 1.5961 -7.3068 -0.8695 26 6 2.3452 -5.9756 -0.8492 27 6 2.5898 -5.5034 -2.2837 28 6 3.6860 -6.1589 -0.1355 29 1 -0.3634 -0.0811 1.0245 30 1 -0.3633 0.9278 -0.4419 31 1 -0.3634 -0.8466 -0.5825 32 1 1.6937 2.1313 0.0004 33 1 4.5033 2.6421 -0.8972 34 1 4.1847 -2.0811 -0.0007 35 1 3.1767 -3.6238 -0.2015 36 1 0.7145 -4.6355 1.8772 37 1 2.2557 -5.5252 1.8289 38 1 -0.4752 -6.5615 0.9381 39 1 0.4537 -7.0948 2.3629 40 1 0.3002 -9.3315 -1.1127 41 1 2.2317 -8.0754 -1.3095 42 1 0.6854 -7.2015 -1.4588 43 1 3.1239 -4.5533 -2.2674 44 1 3.1859 -6.2460 -2.8140 45 1 1.6340 -5.3744 -2.7918 46 1 3.5109 -6.4967 0.8859 47 1 4.2818 -6.9014 -0.6666 48 1 4.2209 -5.2093 -0.1175 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941027589.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:20 Heat of formation + Delta-G solvation = -48.076287 kcal Electronic energy + Delta-G solvation = -29766.930790 eV Core-core repulsion = 25821.536884 eV Total energy + Delta-G solvation = -3945.393905 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.09491 -41.07746 -39.66040 -38.01532 -36.57822 -35.01484 -34.34272 -33.93405 -32.00923 -30.66987 -28.97264 -28.22110 -27.73518 -26.70441 -25.36155 -24.05976 -23.15590 -22.43564 -21.76236 -19.98040 -19.47582 -19.39913 -18.67734 -18.09642 -16.92449 -16.91194 -16.38257 -16.24398 -16.16059 -15.73772 -15.46142 -15.29443 -15.09937 -14.98144 -14.64754 -14.14636 -14.03863 -13.99331 -13.79071 -13.61960 -13.58954 -13.35997 -12.98495 -12.91844 -12.72271 -12.63251 -12.52841 -12.46510 -12.13119 -11.88879 -11.78235 -11.68773 -11.39183 -11.18779 -11.00348 -10.71111 -10.48834 -10.41847 -10.18209 -9.94640 -8.89204 -8.21669 -5.40768 -0.56222 0.04721 1.60123 1.66825 1.69264 1.84742 2.02420 2.45860 2.66407 2.67211 3.22432 3.40435 3.51409 3.56464 3.61464 3.64414 3.87933 3.91867 3.99173 4.16365 4.26059 4.32999 4.40920 4.48060 4.56317 4.60747 4.65555 4.72187 4.75149 4.77433 4.82905 4.90213 4.96753 5.02194 5.03030 5.11125 5.14306 5.20975 5.28723 5.30290 5.37323 5.41089 5.51584 5.62999 5.90927 6.41351 6.46095 6.51654 6.74787 7.08195 7.13985 7.79122 8.25606 9.01132 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024549 B = 0.002775 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.284341 B =10089.327980 C =10549.298861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.028 3.972 3 C -0.191 4.191 4 C 0.334 3.666 5 O -0.487 6.487 6 N -0.532 5.532 7 C 0.170 3.830 8 C -0.215 4.215 9 C 0.563 3.437 10 O -0.561 6.561 11 N -0.702 5.702 12 C 0.179 3.821 13 H 0.061 0.939 14 C -0.128 4.128 15 C 0.146 3.854 16 N -0.608 5.608 17 C -0.351 4.351 18 H 0.046 0.954 19 C -0.069 4.069 20 N -0.938 5.938 21 Si 1.111 2.889 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.273 1.273 25 C 0.178 3.822 26 C -0.082 4.082 27 C -0.131 4.131 28 C -0.124 4.124 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.174 0.826 33 H 0.426 0.574 34 H 0.183 0.817 35 H 0.409 0.591 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.006 0.994 39 H 0.052 0.948 40 H 0.252 0.748 41 H 0.048 0.952 42 H -0.006 1.006 43 H 0.077 0.923 44 H 0.057 0.943 45 H 0.044 0.956 46 H 0.049 0.951 47 H 0.047 0.953 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.559 24.271 -1.376 25.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.019 3.981 3 C -0.211 4.211 4 C 0.157 3.843 5 O -0.299 6.299 6 N -0.252 5.252 7 C 0.011 3.989 8 C -0.220 4.220 9 C 0.351 3.649 10 O -0.441 6.441 11 N -0.354 5.354 12 C 0.074 3.926 13 H 0.079 0.921 14 C -0.168 4.168 15 C 0.020 3.980 16 N -0.332 5.332 17 C -0.480 4.480 18 H 0.064 0.936 19 C -0.266 4.266 20 N -0.579 5.579 21 Si 0.936 3.064 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.199 1.199 25 C 0.052 3.948 26 C -0.085 4.085 27 C -0.189 4.189 28 C -0.181 4.181 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.191 0.809 33 H 0.289 0.711 34 H 0.200 0.800 35 H 0.247 0.753 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.024 0.976 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.012 0.988 43 H 0.096 0.904 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.166 22.826 -1.236 23.956 hybrid contribution -1.460 1.035 0.089 1.792 sum 5.706 23.862 -1.147 24.561 Atomic orbital electron populations 1.21088 0.88435 1.04380 1.03849 1.20566 0.98057 0.90898 0.88538 1.22179 0.93343 1.00085 1.05529 1.19582 0.87627 0.85388 0.91727 1.84671 1.75758 1.33280 1.36168 1.67224 1.42548 0.98822 1.16569 1.22965 0.89926 0.95878 0.90145 1.20834 0.95530 0.93883 1.11784 1.18175 0.86709 0.83935 0.76040 1.90743 1.14910 1.87478 1.50966 1.45961 1.11272 1.04820 1.73327 1.20581 0.95003 0.81473 0.95525 0.92088 1.22240 1.01180 0.96737 0.96642 1.20950 0.92701 0.89536 0.94809 1.44256 1.64298 1.13594 1.11035 1.20089 1.44871 0.86959 0.96122 0.93592 1.27136 1.01170 1.01691 0.96619 1.70877 1.22294 1.34442 1.30331 0.82931 0.75058 0.73060 0.75371 1.21344 1.21619 1.19863 1.20682 0.94838 0.93795 0.85510 1.21166 0.96533 0.94614 0.96156 1.21759 1.01465 1.01642 0.94055 1.21711 0.94622 1.01246 1.00532 0.90199 0.89035 0.90109 0.80877 0.71077 0.80041 0.75272 0.92065 0.90985 0.97647 0.92984 0.93817 0.93351 0.98833 0.90372 0.92369 0.93660 0.93153 0.93410 0.90746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.20 8.89 71.24 0.63 -1.57 16 2 C 0.03 0.52 5.95 -19.43 -0.12 0.40 16 3 C -0.19 -2.81 9.71 22.42 0.22 -2.60 16 4 C 0.33 5.65 7.74 84.81 0.66 6.30 16 5 O -0.49 -6.31 13.55 -88.08 -1.19 -7.50 16 6 N -0.53 -10.56 10.37 -307.80 -3.19 -13.75 16 7 C 0.17 3.09 10.69 85.04 0.91 4.00 16 8 C -0.21 -4.50 5.89 -19.99 -0.12 -4.61 16 9 C 0.56 14.57 7.68 86.72 0.67 15.24 16 10 O -0.56 -18.14 13.13 -3.99 -0.05 -18.19 16 11 N -0.70 -16.90 4.24 -445.49 -1.89 -18.79 16 12 C 0.18 5.66 1.57 45.02 0.07 5.73 16 13 H 0.06 2.25 7.57 -2.39 -0.02 2.23 16 14 C -0.13 -4.41 5.31 30.67 0.16 -4.25 16 15 C 0.15 6.25 6.52 86.36 0.56 6.81 16 16 N -0.61 -29.71 2.23 -699.93 -1.56 -31.27 16 17 C -0.35 -19.18 9.43 84.03 0.79 -18.38 16 18 H 0.05 2.54 7.95 -2.91 -0.02 2.52 16 19 C -0.07 -3.86 4.63 84.86 0.39 -3.46 16 20 N -0.94 -56.60 12.60 21.65 0.27 -56.33 16 21 Si 1.11 50.14 29.99 68.60 2.06 52.20 16 22 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 24 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 25 C 0.18 8.03 3.43 86.22 0.30 8.33 16 26 C -0.08 -2.71 0.56 -52.25 -0.03 -2.74 16 27 C -0.13 -3.61 8.31 71.98 0.60 -3.01 16 28 C -0.12 -3.74 7.82 71.98 0.56 -3.17 16 29 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.09 1.10 8.07 -2.39 -0.02 1.09 16 31 H 0.08 1.90 5.85 -2.39 -0.01 1.89 16 32 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 33 H 0.43 0.98 9.06 -74.06 -0.67 0.31 16 34 H 0.18 2.35 6.45 -2.91 -0.02 2.34 16 35 H 0.41 7.50 4.75 -92.71 -0.44 7.06 16 36 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.07 2.41 6.34 -2.39 -0.02 2.40 16 38 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 39 H 0.05 2.24 7.93 -2.39 -0.02 2.22 16 40 H 0.25 15.67 7.00 -92.71 -0.65 15.03 16 41 H 0.05 2.47 6.64 -2.38 -0.02 2.45 16 42 H -0.01 -0.31 7.91 -2.39 -0.02 -0.33 16 43 H 0.08 1.65 7.36 -2.39 -0.02 1.64 16 44 H 0.06 1.60 8.14 -2.39 -0.02 1.59 16 45 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 46 H 0.05 1.77 5.97 -2.39 -0.01 1.75 16 47 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 48 H 0.07 1.59 6.58 -2.39 -0.02 1.57 16 Total: -1.00 -72.50 373.89 0.71 -71.79 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.01 Total: 18.83 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 6.26 Total: 3.01 kcal Atomic # 7 Polarization: -113.76 SS G_CDS: -6.37 Total: -120.13 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -1.25 Total: -25.69 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 2.06 Total: 52.20 kcal Total: -72.50 0.71 -71.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941027589.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.710 kcal (2) G-P(sol) polarization free energy of solvation -72.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds