Wall clock time and date at job start Tue Mar 31 2020 17:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35921 * 117.00200 * 2 1 4 4 C 1.38851 * 120.40316 * 0.02701 * 3 2 1 5 5 N 1.31878 * 120.99831 * 179.97438 * 4 3 2 6 6 C 1.31685 * 121.94181 * 359.72597 * 5 4 3 7 7 C 1.39532 * 120.69172 * 0.53859 * 6 5 4 8 8 C 1.47853 * 120.53243 * 179.74856 * 7 6 5 9 9 O 1.21549 * 120.00003 * 173.62496 * 8 7 6 10 10 N 1.34778 * 119.99759 * 353.62160 * 8 7 6 11 11 C 1.46502 * 119.99596 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.46152 * 324.97150 * 11 10 8 13 13 C 1.53041 * 109.46061 * 84.93194 * 11 10 8 14 14 C 1.53190 * 109.31042 * 181.38386 * 13 11 10 15 15 N 1.46924 * 108.77876 * 305.36343 * 14 13 11 16 16 C 1.36927 * 120.63437 * 233.60920 * 15 14 13 17 17 H 1.08003 * 120.00396 * 152.61359 * 16 15 14 18 18 C 1.38820 * 120.00263 * 332.61182 * 16 15 14 19 19 N 1.31612 * 120.00249 * 159.21089 * 18 16 15 20 20 Si 1.86801 * 119.99667 * 339.21529 * 18 16 15 21 21 H 1.48492 * 109.47233 * 94.64652 * 20 18 16 22 22 H 1.48501 * 109.46824 * 214.64698 * 20 18 16 23 23 H 1.48498 * 109.46962 * 334.64297 * 20 18 16 24 24 C 1.46925 * 118.73714 * 53.61234 * 15 14 13 25 25 C 1.53043 * 109.45847 * 205.00414 * 11 10 8 26 26 H 1.09005 * 109.49439 * 298.56321 * 25 11 10 27 27 C 1.52997 * 109.49868 * 58.66221 * 25 11 10 28 28 C 1.38845 * 120.40576 * 180.02562 * 3 2 1 29 29 C 1.50697 * 120.88027 * 0.02562 * 28 3 2 30 30 H 1.09000 * 109.47102 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46962 * 299.99564 * 1 2 3 32 32 H 1.09007 * 109.47122 * 59.99785 * 1 2 3 33 33 H 1.07997 * 119.49972 * 359.97438 * 4 3 2 34 34 H 1.08006 * 119.65599 * 180.26645 * 6 5 4 35 35 H 0.96995 * 120.00431 * 0.02562 * 10 8 7 36 36 H 1.09000 * 109.49870 * 301.33734 * 13 11 10 37 37 H 1.08998 * 109.49674 * 61.43299 * 13 11 10 38 38 H 1.09006 * 109.59058 * 65.15535 * 14 13 11 39 39 H 1.09007 * 109.58535 * 185.57566 * 14 13 11 40 40 H 0.96995 * 120.00147 * 180.02562 * 19 18 16 41 41 H 1.08995 * 109.59188 * 186.60068 * 24 15 14 42 42 H 1.09006 * 109.58821 * 66.17640 * 24 15 14 43 43 H 1.09000 * 109.47057 * 60.00172 * 27 25 11 44 44 H 1.08998 * 109.46822 * 179.97438 * 27 25 11 45 45 H 1.09005 * 109.46958 * 299.99966 * 27 25 11 46 46 H 1.08997 * 109.47623 * 263.95378 * 29 28 3 47 47 H 1.09006 * 109.47069 * 23.95725 * 29 28 3 48 48 H 1.09003 * 109.46903 * 143.95105 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2981 2.3809 0.0006 5 7 1.8846 3.5620 0.0011 6 6 3.1953 3.6891 0.0064 7 6 4.0200 2.5635 0.0005 8 6 5.4912 2.7102 0.0010 9 8 6.1998 1.7290 0.1127 10 7 6.0466 3.9321 -0.1226 11 6 7.5043 4.0775 -0.1216 12 1 7.9421 3.3432 0.5546 13 6 8.0404 3.8501 -1.5369 14 6 9.5677 3.9688 -1.5253 15 7 9.9369 5.2654 -0.9413 16 6 10.7644 6.1237 -1.6148 17 1 10.6945 7.1876 -1.4428 18 6 11.6933 5.6263 -2.5186 19 7 12.1926 6.4122 -3.4487 20 14 12.2344 3.8414 -2.4146 21 1 11.4120 3.0202 -3.3389 22 1 13.6652 3.7349 -2.7977 23 1 12.0563 3.3504 -1.0245 24 6 9.4013 5.6237 0.3791 25 6 7.8758 5.4865 0.3463 26 1 7.4593 6.2205 -0.3436 27 6 7.3113 5.7245 1.7482 28 6 3.4321 1.2935 -0.0005 29 6 4.2810 0.0483 -0.0017 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 0.2197 2.3226 0.0006 34 1 3.6367 4.6748 0.0110 35 1 5.4811 4.7151 -0.2115 36 1 7.7554 2.8550 -1.8784 37 1 7.6224 4.5995 -2.2090 38 1 9.9923 3.1637 -0.9255 39 1 9.9468 3.9062 -2.5454 40 1 12.8414 6.0646 -4.0804 41 1 9.6706 6.6530 0.6157 42 1 9.8122 4.9536 1.1343 43 1 7.7295 4.9910 2.4376 44 1 7.5766 6.7279 2.0812 45 1 6.2262 5.6239 1.7249 46 1 4.5756 -0.1916 1.0199 47 1 3.7095 -0.7806 -0.4193 48 1 5.1719 0.2166 -0.6068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942180164.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:33 Heat of formation + Delta-G solvation = -12.106649 kcal Electronic energy + Delta-G solvation = -29246.319966 eV Core-core repulsion = 25302.485821 eV Total energy + Delta-G solvation = -3943.834145 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.34188 -39.89848 -38.47834 -37.77569 -34.93934 -33.86823 -32.91758 -31.67388 -31.22678 -29.90683 -28.12349 -27.97907 -26.41196 -25.30965 -23.95638 -22.67252 -22.08279 -21.41711 -20.65622 -19.74014 -18.42480 -17.76356 -16.93085 -16.67118 -16.49450 -16.39668 -15.96143 -15.17062 -14.99423 -14.59576 -14.44223 -14.13739 -13.95027 -13.51611 -13.45728 -13.33885 -13.11668 -12.98578 -12.90165 -12.75843 -12.48548 -12.16551 -12.10663 -11.91766 -11.87242 -11.66479 -11.57360 -11.03238 -10.62511 -10.56375 -10.28469 -10.14704 -10.02227 -9.87244 -9.78845 -9.50649 -9.46388 -8.86248 -8.83281 -8.60938 -6.99904 -5.95319 -3.31454 0.30133 0.86559 2.60125 2.71452 3.18220 3.34968 3.50591 3.51741 3.54118 3.96648 4.13438 4.39580 4.42858 4.53841 4.60692 4.65478 4.79754 4.89103 4.91131 4.99952 5.03526 5.24389 5.27096 5.31749 5.42211 5.45657 5.63040 5.68765 5.82124 5.85788 5.87109 5.91804 6.00572 6.07490 6.08727 6.20601 6.31346 6.34948 6.39981 6.57916 6.62839 6.68658 6.70027 6.72936 6.91298 7.45619 7.49931 7.94871 8.15864 8.31948 8.92798 9.71519 10.08630 11.20409 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021478 B = 0.002726 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.342564 B =10268.906090 C =10900.313580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.065 3.935 4 C 0.038 3.962 5 N -0.457 5.457 6 C 0.101 3.899 7 C -0.151 4.151 8 C 0.561 3.439 9 O -0.525 6.525 10 N -0.713 5.713 11 C 0.157 3.843 12 H 0.086 0.914 13 C -0.142 4.142 14 C 0.129 3.871 15 N -0.606 5.606 16 C -0.261 4.261 17 H 0.086 0.914 18 C 0.024 3.976 19 N -0.908 5.908 20 Si 0.880 3.120 21 H -0.289 1.289 22 H -0.303 1.303 23 H -0.269 1.269 24 C 0.158 3.842 25 C -0.117 4.117 26 H 0.077 0.923 27 C -0.143 4.143 28 C -0.012 4.012 29 C -0.114 4.114 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.162 0.838 34 H 0.162 0.838 35 H 0.396 0.604 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.028 0.972 39 H 0.074 0.926 40 H 0.263 0.737 41 H 0.068 0.932 42 H 0.026 0.974 43 H 0.053 0.947 44 H 0.057 0.943 45 H 0.048 0.952 46 H 0.080 0.920 47 H 0.066 0.934 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.400 -9.490 9.083 27.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.017 3.983 4 C -0.119 4.119 5 N -0.166 5.166 6 C -0.058 4.058 7 C -0.156 4.156 8 C 0.346 3.654 9 O -0.402 6.402 10 N -0.363 5.363 11 C 0.054 3.946 12 H 0.104 0.896 13 C -0.182 4.182 14 C 0.003 3.997 15 N -0.329 5.329 16 C -0.389 4.389 17 H 0.104 0.896 18 C -0.175 4.175 19 N -0.550 5.550 20 Si 0.711 3.289 21 H -0.216 1.216 22 H -0.231 1.231 23 H -0.194 1.194 24 C 0.031 3.969 25 C -0.138 4.138 26 H 0.095 0.905 27 C -0.201 4.201 28 C -0.021 4.021 29 C -0.170 4.170 30 H 0.123 0.877 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.179 0.821 34 H 0.179 0.821 35 H 0.231 0.769 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.046 0.954 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.043 0.957 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.098 0.902 47 H 0.085 0.915 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -24.171 -9.615 9.024 27.534 hybrid contribution 0.171 -1.154 -0.184 1.181 sum -23.999 -10.769 8.841 27.751 Atomic orbital electron populations 1.23155 0.77899 1.04563 1.01591 1.86105 1.21571 1.25504 1.88573 1.19776 0.92352 0.86074 1.00050 1.23065 1.00694 0.87085 1.01047 1.67528 1.11884 1.25963 1.11201 1.22853 0.88727 0.98132 0.96109 1.20818 0.95097 0.93731 1.05990 1.17888 0.86473 0.83835 0.77162 1.90752 1.62984 1.37253 1.49256 1.46174 1.08830 1.07937 1.73403 1.21076 0.77477 0.98012 0.98020 0.89589 1.22417 0.98795 1.01165 0.95863 1.21312 0.91725 0.88119 0.98533 1.44397 1.54888 1.17574 1.16078 1.18901 1.11105 0.89848 1.19052 0.89637 1.25272 0.97470 0.97329 0.97422 1.69832 1.32364 1.36169 1.16668 0.86973 0.76986 0.86516 0.78447 1.21635 1.23140 1.19370 1.20923 0.89041 0.99568 0.87354 1.21982 0.99853 0.95339 0.96579 0.90457 1.21775 0.99982 1.01682 0.96629 1.19869 0.90767 0.96018 0.95411 1.20933 0.99627 0.92442 1.04023 0.87723 0.92328 0.92318 0.82131 0.82114 0.76868 0.92237 0.91516 0.95393 0.90772 0.92763 0.91339 0.95655 0.92808 0.92398 0.93307 0.90159 0.91482 0.88172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.82 101.05 0.99 1.09 16 2 O -0.31 -2.70 9.57 -19.49 -0.19 -2.88 16 3 C 0.06 0.66 6.68 -39.13 -0.26 0.40 16 4 C 0.04 0.35 10.21 -17.30 -0.18 0.18 16 5 N -0.46 -4.91 10.34 -12.79 -0.13 -5.04 16 6 C 0.10 1.05 10.69 -17.13 -0.18 0.87 16 7 C -0.15 -1.79 5.89 -104.84 -0.62 -2.41 16 8 C 0.56 7.67 7.69 -12.33 -0.09 7.58 16 9 O -0.52 -8.70 13.16 5.32 0.07 -8.63 16 10 N -0.71 -8.93 4.32 -54.70 -0.24 -9.17 16 11 C 0.16 2.42 1.88 -67.89 -0.13 2.30 16 12 H 0.09 1.47 7.58 -51.93 -0.39 1.07 16 13 C -0.14 -2.57 5.65 -26.61 -0.15 -2.72 16 14 C 0.13 2.84 4.20 -3.71 -0.02 2.82 16 15 N -0.61 -14.06 2.77 -172.31 -0.48 -14.54 16 16 C -0.26 -7.17 10.03 -15.06 -0.15 -7.32 16 17 H 0.09 2.49 8.06 -52.48 -0.42 2.07 16 18 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 19 N -0.91 -27.71 13.97 55.49 0.78 -26.93 16 20 Si 0.88 22.53 24.36 -169.99 -4.14 18.39 16 21 H -0.29 -7.20 6.69 56.52 0.38 -6.82 16 22 H -0.30 -7.90 7.11 56.52 0.40 -7.49 16 23 H -0.27 -6.77 6.53 56.52 0.37 -6.40 16 24 C 0.16 2.95 5.80 -3.71 -0.02 2.93 16 25 C -0.12 -1.73 2.46 -90.50 -0.22 -1.95 16 26 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 27 C -0.14 -1.68 9.03 37.16 0.34 -1.35 16 28 C -0.01 -0.14 5.97 -103.76 -0.62 -0.76 16 29 C -0.11 -1.33 8.70 36.00 0.31 -1.02 16 30 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.20 7.67 -51.93 -0.40 -0.20 16 32 H 0.06 0.20 7.68 -51.92 -0.40 -0.19 16 33 H 0.16 0.99 6.30 -52.49 -0.33 0.66 16 34 H 0.16 1.26 6.47 -52.48 -0.34 0.92 16 35 H 0.40 3.92 6.41 -40.82 -0.26 3.66 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.03 0.62 7.02 -51.93 -0.36 0.26 16 39 H 0.07 1.79 4.55 -51.92 -0.24 1.56 16 40 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 41 H 0.07 1.27 7.93 -51.93 -0.41 0.85 16 42 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.49 7.36 -51.93 -0.38 0.11 16 46 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.07 0.70 7.45 -51.93 -0.39 0.31 16 48 H 0.10 1.35 5.94 -51.93 -0.31 1.04 16 LS Contribution 372.60 15.07 5.61 5.61 Total: -1.00 -33.21 372.60 -7.01 -40.23 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -7.21 Total: 1.73 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -1.09 Total: 1.24 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: -0.07 Total: -55.69 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.12 Total: -11.51 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.14 Total: 18.39 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.21 -7.01 -40.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942180164.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.119 kcal (2) G-P(sol) polarization free energy of solvation -33.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds