Wall clock time and date at job start Tue Mar 31 2020 17:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35921 * 117.00196 * 2 1 4 4 C 1.38848 * 120.40620 * 359.97438 * 3 2 1 5 5 N 1.31885 * 121.00147 * 180.02562 * 4 3 2 6 6 C 1.31677 * 121.94285 * 359.97369 * 5 4 3 7 7 C 1.39526 * 120.68719 * 359.97438 * 6 5 4 8 8 C 1.47856 * 120.52731 * 180.02562 * 7 6 5 9 9 O 1.21559 * 119.99784 * 185.99968 * 8 7 6 10 10 N 1.34772 * 120.00362 * 5.99256 * 8 7 6 11 11 C 1.46502 * 120.00155 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.46328 * 325.03199 * 11 10 8 13 13 C 1.53044 * 109.45659 * 85.00888 * 11 10 8 14 14 C 1.53183 * 109.31475 * 58.65218 * 13 11 10 15 15 N 1.46931 * 108.77630 * 54.63819 * 14 13 11 16 16 C 1.36939 * 120.63211 * 126.37013 * 15 14 13 17 17 H 1.07999 * 119.99634 * 207.40887 * 16 15 14 18 18 C 1.38809 * 119.99776 * 27.40055 * 16 15 14 19 19 N 1.31620 * 120.00485 * 17.50347 * 18 16 15 20 20 Si 1.86803 * 119.99660 * 197.50264 * 18 16 15 21 21 H 1.48499 * 109.47331 * 60.00095 * 20 18 16 22 22 H 1.48502 * 109.47210 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46896 * 299.99971 * 20 18 16 24 24 C 1.46928 * 118.73591 * 306.38918 * 15 14 13 25 25 C 1.53040 * 109.45866 * 205.06939 * 11 10 8 26 26 H 1.09002 * 109.49696 * 181.39567 * 25 11 10 27 27 C 1.53005 * 109.49611 * 61.30372 * 25 11 10 28 28 C 1.38847 * 120.40734 * 179.72093 * 3 2 1 29 29 C 1.50697 * 120.87687 * 359.97185 * 28 3 2 30 30 H 1.09001 * 109.46696 * 60.00165 * 1 2 3 31 31 H 1.08992 * 109.47084 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47259 * 300.00575 * 1 2 3 33 33 H 1.08005 * 119.50207 * 359.97438 * 4 3 2 34 34 H 1.07993 * 119.65919 * 179.97438 * 6 5 4 35 35 H 0.97005 * 120.00061 * 0.02562 * 10 8 7 36 36 H 1.09006 * 109.49340 * 178.60765 * 13 11 10 37 37 H 1.09002 * 109.49218 * 298.70016 * 13 11 10 38 38 H 1.09003 * 109.58448 * 174.42102 * 14 13 11 39 39 H 1.09001 * 109.59146 * 294.84436 * 14 13 11 40 40 H 0.96994 * 119.99857 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.58178 * 173.39851 * 24 15 14 42 42 H 1.08997 * 109.58212 * 293.82202 * 24 15 14 43 43 H 1.08996 * 109.47343 * 59.99339 * 27 25 11 44 44 H 1.08999 * 109.46975 * 179.97438 * 27 25 11 45 45 H 1.09001 * 109.46537 * 299.99510 * 27 25 11 46 46 H 1.09006 * 109.47083 * 95.61008 * 29 28 3 47 47 H 1.08998 * 109.47031 * 215.60546 * 29 28 3 48 48 H 1.09001 * 109.47321 * 335.61180 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2982 2.3809 -0.0005 5 7 1.8848 3.5621 -0.0010 6 6 3.1954 3.6892 -0.0006 7 6 4.0199 2.5636 0.0011 8 6 5.4912 2.7103 0.0022 9 8 6.1999 1.7287 -0.1065 10 7 6.0465 3.9323 0.1235 11 6 7.5043 4.0776 0.1251 12 1 7.9542 3.2195 0.6244 13 6 8.0108 4.1518 -1.3171 14 6 7.3503 5.3385 -2.0257 15 7 7.5930 6.5546 -1.2377 16 6 8.1509 7.6624 -1.8181 17 1 8.7226 8.3558 -1.2191 18 6 7.9816 7.8939 -3.1762 19 7 7.0282 7.2712 -3.8363 20 14 9.1070 9.0894 -4.0672 21 1 10.5125 8.6233 -3.9552 22 1 8.7208 9.1591 -5.4994 23 1 8.9820 10.4367 -3.4552 24 6 7.2262 6.5593 0.1851 25 6 7.8881 5.3589 0.8688 26 1 8.9711 5.4805 0.8490 27 6 7.4100 5.2700 2.3196 28 6 3.4321 1.2935 0.0058 29 6 4.2809 0.0484 0.0129 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 0.2197 2.3227 -0.0014 34 1 3.6368 4.6748 -0.0014 35 1 5.4809 4.7156 0.2104 36 1 9.0927 4.2847 -1.3163 37 1 7.7575 3.2292 -1.8395 38 1 7.7806 5.4557 -3.0203 39 1 6.2775 5.1642 -2.1077 40 1 6.9098 7.4334 -4.7852 41 1 7.5745 7.4821 0.6491 42 1 6.1433 6.4846 0.2834 43 1 7.8789 4.4141 2.8049 44 1 7.6839 6.1825 2.8489 45 1 6.3268 5.1499 2.3383 46 1 4.5731 -0.1980 -1.0080 47 1 5.1733 0.2204 0.6146 48 1 3.7104 -0.7779 0.4370 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942180165.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:36 Heat of formation + Delta-G solvation = -15.162723 kcal Electronic energy + Delta-G solvation = -29760.820115 eV Core-core repulsion = 25816.853449 eV Total energy + Delta-G solvation = -3943.966666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.14402 -39.78362 -38.30339 -37.52084 -34.42532 -33.66958 -32.75215 -31.32015 -30.83182 -29.71769 -27.96196 -27.78478 -25.90165 -25.31441 -24.02196 -22.55759 -21.95548 -21.17373 -20.70746 -18.64309 -18.46687 -17.50372 -16.85106 -16.43941 -16.31453 -16.23805 -15.39259 -14.92709 -14.81491 -14.43750 -14.12928 -13.99202 -13.83917 -13.55327 -13.31135 -13.07192 -12.93214 -12.80970 -12.70778 -12.53992 -12.32820 -12.16195 -11.90126 -11.73134 -11.50079 -11.38461 -11.07849 -10.81314 -10.69222 -10.38064 -10.23745 -10.06068 -10.03633 -9.75533 -9.58412 -9.44620 -9.29399 -8.64318 -8.61088 -8.46448 -6.70326 -5.80472 -3.23074 0.52265 1.07794 2.78921 2.93570 3.37606 3.44035 3.44657 3.45362 3.74012 4.19291 4.33670 4.47717 4.61110 4.63640 4.79306 4.80609 5.01374 5.07221 5.17505 5.20313 5.29292 5.35384 5.47253 5.48361 5.59129 5.65740 5.78000 5.86734 5.95391 6.03616 6.06778 6.11387 6.15865 6.25824 6.30250 6.42567 6.44365 6.62018 6.64680 6.74471 6.87479 6.90479 6.95765 7.35387 7.65675 7.69653 7.76052 7.77995 8.39619 8.42285 9.18730 9.82140 10.37669 11.27485 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016238 B = 0.003121 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.985343 B = 8970.695155 C = 9613.224707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.307 6.307 3 C 0.061 3.939 4 C 0.038 3.962 5 N -0.455 5.455 6 C 0.106 3.894 7 C -0.150 4.150 8 C 0.562 3.438 9 O -0.534 6.534 10 N -0.702 5.702 11 C 0.161 3.839 12 H 0.075 0.925 13 C -0.155 4.155 14 C 0.173 3.827 15 N -0.591 5.591 16 C -0.255 4.255 17 H 0.065 0.935 18 C 0.004 3.996 19 N -0.900 5.900 20 Si 0.902 3.098 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.283 1.283 24 C 0.151 3.849 25 C -0.120 4.120 26 H 0.083 0.917 27 C -0.142 4.142 28 C -0.013 4.013 29 C -0.112 4.112 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.057 0.943 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.400 0.600 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.087 0.913 39 H 0.018 0.982 40 H 0.254 0.746 41 H 0.058 0.942 42 H 0.013 0.987 43 H 0.048 0.952 44 H 0.054 0.946 45 H 0.050 0.950 46 H 0.079 0.921 47 H 0.099 0.901 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.497 -12.696 10.576 19.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.219 6.219 3 C 0.014 3.986 4 C -0.119 4.119 5 N -0.164 5.164 6 C -0.053 4.053 7 C -0.155 4.155 8 C 0.348 3.652 9 O -0.413 6.413 10 N -0.353 5.353 11 C 0.057 3.943 12 H 0.093 0.907 13 C -0.195 4.195 14 C 0.048 3.952 15 N -0.313 5.313 16 C -0.385 4.385 17 H 0.083 0.917 18 C -0.195 4.195 19 N -0.544 5.544 20 Si 0.732 3.268 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.209 1.209 24 C 0.024 3.976 25 C -0.140 4.140 26 H 0.101 0.899 27 C -0.200 4.200 28 C -0.022 4.022 29 C -0.168 4.168 30 H 0.077 0.923 31 H 0.121 0.879 32 H 0.076 0.924 33 H 0.178 0.822 34 H 0.180 0.820 35 H 0.237 0.763 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.036 0.964 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.030 0.970 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.098 0.902 47 H 0.117 0.883 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.461 -12.801 10.302 19.479 hybrid contribution 0.349 0.490 -0.633 0.873 sum -10.112 -12.312 9.669 18.636 Atomic orbital electron populations 1.23131 0.78071 1.04378 1.01586 1.86086 1.21436 1.25612 1.88749 1.19754 0.92355 0.85980 1.00496 1.23065 1.00634 0.87139 1.01061 1.67545 1.11955 1.25853 1.11087 1.22921 0.88668 0.98357 0.95366 1.20813 0.95210 0.93647 1.05809 1.17834 0.86444 0.83792 0.77098 1.90707 1.63003 1.37531 1.50050 1.46051 1.08775 1.07955 1.72531 1.20945 0.78460 0.97604 0.97243 0.90651 1.22575 1.00974 1.00695 0.95224 1.20736 0.96323 0.82413 0.95755 1.44065 1.72071 1.10995 1.04187 1.19119 1.25277 1.01798 0.92287 0.91700 1.25016 0.97350 0.98891 0.98214 1.70021 1.30207 1.45438 1.08767 0.86384 0.80790 0.80905 0.78757 1.21046 1.21678 1.20913 1.20911 0.95122 0.94977 0.86540 1.21963 1.01856 0.96293 0.93914 0.89863 1.21773 1.00912 1.01150 0.96182 1.19827 0.90707 0.95933 0.95745 1.20907 0.99500 0.92393 1.04005 0.92331 0.87863 0.92423 0.82242 0.81996 0.76259 0.91679 0.92620 0.89507 0.96408 0.93574 0.92395 0.96982 0.93243 0.92679 0.93098 0.90217 0.88298 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.82 101.05 0.99 1.13 16 2 O -0.31 -3.16 9.58 -19.49 -0.19 -3.35 16 3 C 0.06 0.74 6.68 -39.13 -0.26 0.48 16 4 C 0.04 0.44 10.21 -17.30 -0.18 0.27 16 5 N -0.46 -6.24 10.34 -12.80 -0.13 -6.37 16 6 C 0.11 1.47 10.69 -17.14 -0.18 1.29 16 7 C -0.15 -2.17 5.89 -104.84 -0.62 -2.78 16 8 C 0.56 8.99 7.69 -12.33 -0.09 8.90 16 9 O -0.53 -9.56 13.16 5.31 0.07 -9.49 16 10 N -0.70 -10.90 3.55 -54.70 -0.19 -11.10 16 11 C 0.16 2.67 2.21 -67.89 -0.15 2.52 16 12 H 0.08 1.25 7.58 -51.93 -0.39 0.85 16 13 C -0.15 -2.99 5.77 -26.61 -0.15 -3.14 16 14 C 0.17 4.01 5.06 -3.71 -0.02 3.99 16 15 N -0.59 -13.96 3.00 -172.32 -0.52 -14.48 16 16 C -0.26 -6.76 9.59 -15.06 -0.14 -6.91 16 17 H 0.07 1.69 7.89 -52.49 -0.41 1.27 16 18 C 0.00 0.11 4.91 -17.43 -0.09 0.03 16 19 N -0.90 -25.67 11.18 55.49 0.62 -25.05 16 20 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 24 C 0.15 2.88 5.50 -3.71 -0.02 2.86 16 25 C -0.12 -1.89 2.67 -90.50 -0.24 -2.13 16 26 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 27 C -0.14 -1.82 9.05 37.16 0.34 -1.49 16 28 C -0.01 -0.18 5.97 -103.76 -0.62 -0.80 16 29 C -0.11 -1.44 8.71 36.00 0.31 -1.13 16 30 H 0.06 0.30 7.67 -51.93 -0.40 -0.10 16 31 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.27 7.68 -51.93 -0.40 -0.12 16 33 H 0.16 1.32 6.30 -52.48 -0.33 0.99 16 34 H 0.16 2.07 6.46 -52.49 -0.34 1.73 16 35 H 0.40 5.94 4.83 -40.82 -0.20 5.74 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.09 2.31 6.02 -51.93 -0.31 2.00 16 39 H 0.02 0.43 7.74 -51.93 -0.40 0.03 16 40 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 42 H 0.01 0.23 6.64 -51.93 -0.34 -0.12 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.05 0.63 7.54 -51.93 -0.39 0.24 16 46 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.10 1.40 5.92 -51.93 -0.31 1.09 16 48 H 0.06 0.73 7.46 -51.93 -0.39 0.35 16 LS Contribution 375.07 15.07 5.65 5.65 Total: -1.00 -31.03 375.07 -7.96 -38.99 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -7.12 Total: 5.72 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -1.12 Total: 3.08 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.22 Total: -57.00 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.12 Total: -12.84 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.03 -7.96 -38.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942180165.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.831 kcal (2) G-P(sol) polarization free energy of solvation -31.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds