Wall clock time and date at job start Tue Mar 31 2020 17:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35921 * 117.00196 * 2 1 4 4 C 1.38848 * 120.40620 * 359.97438 * 3 2 1 5 5 N 1.31885 * 121.00147 * 180.02562 * 4 3 2 6 6 C 1.31677 * 121.94285 * 359.97369 * 5 4 3 7 7 C 1.39526 * 120.68719 * 359.97438 * 6 5 4 8 8 C 1.47856 * 120.52731 * 180.02562 * 7 6 5 9 9 O 1.21559 * 119.99784 * 185.99968 * 8 7 6 10 10 N 1.34772 * 120.00362 * 5.99256 * 8 7 6 11 11 C 1.46502 * 120.00155 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.46328 * 325.03199 * 11 10 8 13 13 C 1.53044 * 109.45659 * 85.00888 * 11 10 8 14 14 C 1.53183 * 109.31475 * 58.65218 * 13 11 10 15 15 N 1.46931 * 108.77630 * 54.63819 * 14 13 11 16 16 C 1.36939 * 120.63211 * 126.37013 * 15 14 13 17 17 H 1.07999 * 119.99634 * 207.40887 * 16 15 14 18 18 C 1.38809 * 119.99776 * 27.40055 * 16 15 14 19 19 N 1.31620 * 120.00485 * 17.50347 * 18 16 15 20 20 Si 1.86803 * 119.99660 * 197.50264 * 18 16 15 21 21 H 1.48499 * 109.47331 * 60.00095 * 20 18 16 22 22 H 1.48502 * 109.47210 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46896 * 299.99971 * 20 18 16 24 24 C 1.46928 * 118.73591 * 306.38918 * 15 14 13 25 25 C 1.53040 * 109.45866 * 205.06939 * 11 10 8 26 26 H 1.09002 * 109.49696 * 181.39567 * 25 11 10 27 27 C 1.53005 * 109.49611 * 61.30372 * 25 11 10 28 28 C 1.38847 * 120.40734 * 179.72093 * 3 2 1 29 29 C 1.50697 * 120.87687 * 359.97185 * 28 3 2 30 30 H 1.09001 * 109.46696 * 60.00165 * 1 2 3 31 31 H 1.08992 * 109.47084 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47259 * 300.00575 * 1 2 3 33 33 H 1.08005 * 119.50207 * 359.97438 * 4 3 2 34 34 H 1.07993 * 119.65919 * 179.97438 * 6 5 4 35 35 H 0.97005 * 120.00061 * 0.02562 * 10 8 7 36 36 H 1.09006 * 109.49340 * 178.60765 * 13 11 10 37 37 H 1.09002 * 109.49218 * 298.70016 * 13 11 10 38 38 H 1.09003 * 109.58448 * 174.42102 * 14 13 11 39 39 H 1.09001 * 109.59146 * 294.84436 * 14 13 11 40 40 H 0.96994 * 119.99857 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.58178 * 173.39851 * 24 15 14 42 42 H 1.08997 * 109.58212 * 293.82202 * 24 15 14 43 43 H 1.08996 * 109.47343 * 59.99339 * 27 25 11 44 44 H 1.08999 * 109.46975 * 179.97438 * 27 25 11 45 45 H 1.09001 * 109.46537 * 299.99510 * 27 25 11 46 46 H 1.09006 * 109.47083 * 95.61008 * 29 28 3 47 47 H 1.08998 * 109.47031 * 215.60546 * 29 28 3 48 48 H 1.09001 * 109.47321 * 335.61180 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2982 2.3809 -0.0005 5 7 1.8848 3.5621 -0.0010 6 6 3.1954 3.6892 -0.0006 7 6 4.0199 2.5636 0.0011 8 6 5.4912 2.7103 0.0022 9 8 6.1999 1.7287 -0.1065 10 7 6.0465 3.9323 0.1235 11 6 7.5043 4.0776 0.1251 12 1 7.9542 3.2195 0.6244 13 6 8.0108 4.1518 -1.3171 14 6 7.3503 5.3385 -2.0257 15 7 7.5930 6.5546 -1.2377 16 6 8.1509 7.6624 -1.8181 17 1 8.7226 8.3558 -1.2191 18 6 7.9816 7.8939 -3.1762 19 7 7.0282 7.2712 -3.8363 20 14 9.1070 9.0894 -4.0672 21 1 10.5125 8.6233 -3.9552 22 1 8.7208 9.1591 -5.4994 23 1 8.9820 10.4367 -3.4552 24 6 7.2262 6.5593 0.1851 25 6 7.8881 5.3589 0.8688 26 1 8.9711 5.4805 0.8490 27 6 7.4100 5.2700 2.3196 28 6 3.4321 1.2935 0.0058 29 6 4.2809 0.0484 0.0129 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 0.2197 2.3227 -0.0014 34 1 3.6368 4.6748 -0.0014 35 1 5.4809 4.7156 0.2104 36 1 9.0927 4.2847 -1.3163 37 1 7.7575 3.2292 -1.8395 38 1 7.7806 5.4557 -3.0203 39 1 6.2775 5.1642 -2.1077 40 1 6.9098 7.4334 -4.7852 41 1 7.5745 7.4821 0.6491 42 1 6.1433 6.4846 0.2834 43 1 7.8789 4.4141 2.8049 44 1 7.6839 6.1825 2.8489 45 1 6.3268 5.1499 2.3383 46 1 4.5731 -0.1980 -1.0080 47 1 5.1733 0.2204 0.6146 48 1 3.7104 -0.7779 0.4370 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942180165.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:35 Heat of formation + Delta-G solvation = -34.231934 kcal Electronic energy + Delta-G solvation = -29761.647018 eV Core-core repulsion = 25816.853449 eV Total energy + Delta-G solvation = -3944.793569 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.16855 -40.99864 -39.39499 -38.75993 -36.07310 -34.73793 -34.15010 -32.88556 -32.33412 -31.07644 -28.89103 -28.47690 -27.37904 -27.01650 -25.13578 -23.86144 -23.26996 -22.76229 -21.90246 -20.11241 -19.48648 -18.68563 -18.44229 -17.46464 -17.36761 -17.03340 -16.84946 -16.58793 -16.17555 -15.68699 -15.49373 -15.25529 -15.15214 -14.82655 -14.71362 -14.41186 -14.17807 -13.93220 -13.83866 -13.74911 -13.52831 -13.14586 -13.11494 -12.93961 -12.73882 -12.68306 -12.50016 -12.36466 -12.32364 -12.21375 -11.93321 -11.64616 -11.45991 -11.16864 -11.07875 -10.66153 -10.50794 -10.42784 -9.95737 -9.53440 -8.65075 -7.85064 -5.29231 -0.50819 0.07936 1.47606 1.50301 1.56266 1.76766 1.91552 2.35526 2.52749 2.67718 3.25852 3.29932 3.41756 3.61239 3.64187 3.70609 3.79820 4.02175 4.09355 4.11290 4.15273 4.36580 4.41108 4.43657 4.54029 4.61094 4.64901 4.68039 4.74475 4.77803 4.79401 4.83196 4.99282 5.03292 5.06612 5.10518 5.15058 5.20163 5.33009 5.39868 5.46091 5.52492 5.59590 5.66860 5.76511 6.13343 6.40281 6.48711 6.71673 7.13910 7.16656 7.88656 8.39239 9.20388 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016238 B = 0.003121 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.985343 B = 8970.695155 C = 9613.224707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.317 6.317 3 C 0.069 3.931 4 C 0.044 3.956 5 N -0.471 5.471 6 C 0.099 3.901 7 C -0.162 4.162 8 C 0.563 3.437 9 O -0.556 6.556 10 N -0.698 5.698 11 C 0.169 3.831 12 H 0.084 0.916 13 C -0.143 4.143 14 C 0.187 3.813 15 N -0.607 5.607 16 C -0.260 4.260 17 H 0.069 0.931 18 C -0.050 4.050 19 N -0.932 5.932 20 Si 0.962 3.038 21 H -0.281 1.281 22 H -0.298 1.298 23 H -0.274 1.274 24 C 0.148 3.852 25 C -0.106 4.106 26 H 0.080 0.920 27 C -0.134 4.134 28 C -0.031 4.031 29 C -0.104 4.104 30 H 0.069 0.931 31 H 0.125 0.875 32 H 0.073 0.927 33 H 0.195 0.805 34 H 0.166 0.834 35 H 0.404 0.596 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.047 0.953 39 H 0.000 1.000 40 H 0.247 0.753 41 H 0.059 0.941 42 H 0.021 0.979 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.056 0.944 46 H 0.071 0.929 47 H 0.084 0.916 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.627 -13.182 12.357 21.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.229 6.229 3 C 0.021 3.979 4 C -0.113 4.113 5 N -0.180 5.180 6 C -0.060 4.060 7 C -0.167 4.167 8 C 0.350 3.650 9 O -0.437 6.437 10 N -0.349 5.349 11 C 0.064 3.936 12 H 0.102 0.898 13 C -0.183 4.183 14 C 0.061 3.939 15 N -0.330 5.330 16 C -0.390 4.390 17 H 0.087 0.913 18 C -0.245 4.245 19 N -0.578 5.578 20 Si 0.791 3.209 21 H -0.207 1.207 22 H -0.225 1.225 23 H -0.200 1.200 24 C 0.023 3.977 25 C -0.127 4.127 26 H 0.099 0.901 27 C -0.192 4.192 28 C -0.040 4.040 29 C -0.160 4.160 30 H 0.087 0.913 31 H 0.143 0.857 32 H 0.091 0.909 33 H 0.212 0.788 34 H 0.183 0.817 35 H 0.242 0.758 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.018 0.982 40 H 0.056 0.944 41 H 0.078 0.922 42 H 0.039 0.961 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.090 0.910 47 H 0.103 0.897 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.596 -13.283 12.126 21.400 hybrid contribution 0.567 0.555 -1.161 1.407 sum -11.029 -12.728 10.965 20.097 Atomic orbital electron populations 1.23517 0.75583 1.06385 1.02831 1.86090 1.23948 1.24607 1.88246 1.19737 0.91822 0.86951 0.99368 1.23603 1.02175 0.86270 0.99278 1.67590 1.11721 1.27010 1.11677 1.22955 0.88967 0.98319 0.95741 1.20678 0.94149 0.94430 1.07429 1.18086 0.87164 0.83408 0.76325 1.90695 1.63725 1.38165 1.51103 1.45972 1.08322 1.08160 1.72465 1.20821 0.79112 0.98440 0.95202 0.89834 1.22399 1.00566 0.98458 0.96899 1.20414 0.95108 0.83899 0.94482 1.44267 1.72330 1.10398 1.05969 1.19467 1.24718 1.02160 0.92633 0.91323 1.25723 0.98732 1.00963 0.99099 1.70177 1.31948 1.47323 1.08390 0.85419 0.79020 0.79362 0.77107 1.20692 1.22459 1.20004 1.21099 0.95924 0.96649 0.84072 1.21805 1.01383 0.93975 0.95508 0.90144 1.21704 1.01310 1.02473 0.93702 1.20008 0.91900 0.95733 0.96367 1.20794 0.99083 0.92797 1.03292 0.91281 0.85670 0.90874 0.78823 0.81729 0.75819 0.91798 0.93258 0.93480 0.98216 0.94360 0.92203 0.96075 0.91953 0.91316 0.92530 0.91025 0.89721 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.82 113.37 1.11 1.20 16 2 O -0.32 -5.77 9.58 -92.66 -0.89 -6.66 16 3 C 0.07 1.55 6.68 22.56 0.15 1.70 16 4 C 0.04 0.92 10.21 84.83 0.87 1.79 16 5 N -0.47 -12.28 10.34 -194.40 -2.01 -14.29 16 6 C 0.10 2.70 10.69 85.03 0.91 3.61 16 7 C -0.16 -4.66 5.89 -20.01 -0.12 -4.77 16 8 C 0.56 18.04 7.69 86.79 0.67 18.70 16 9 O -0.56 -20.06 13.16 -3.90 -0.05 -20.12 16 10 N -0.70 -21.47 3.55 -445.26 -1.58 -23.05 16 11 C 0.17 5.46 2.21 45.02 0.10 5.56 16 12 H 0.08 2.65 7.58 -2.39 -0.02 2.64 16 13 C -0.14 -5.62 5.77 30.67 0.18 -5.44 16 14 C 0.19 8.93 5.06 86.36 0.44 9.36 16 15 N -0.61 -28.94 3.00 -699.11 -2.09 -31.04 16 16 C -0.26 -13.85 9.59 84.03 0.81 -13.05 16 17 H 0.07 3.55 7.89 -2.91 -0.02 3.52 16 18 C -0.05 -2.74 4.91 84.86 0.42 -2.33 16 19 N -0.93 -54.88 11.18 21.65 0.24 -54.64 16 20 Si 0.96 44.70 29.59 68.60 2.03 46.72 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 24 C 0.15 5.49 5.50 86.36 0.48 5.97 16 25 C -0.11 -3.19 2.67 -10.72 -0.03 -3.22 16 26 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 27 C -0.13 -3.07 9.05 71.98 0.65 -2.42 16 28 C -0.03 -0.83 5.97 -19.31 -0.12 -0.95 16 29 C -0.10 -2.64 8.71 71.23 0.62 -2.02 16 30 H 0.07 0.47 7.67 -2.39 -0.02 0.46 16 31 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.43 7.68 -2.39 -0.02 0.41 16 33 H 0.20 2.53 6.30 -2.91 -0.02 2.51 16 34 H 0.17 4.21 6.46 -2.91 -0.02 4.19 16 35 H 0.40 11.83 4.83 -92.70 -0.45 11.38 16 36 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 37 H 0.05 1.97 8.14 -2.39 -0.02 1.96 16 38 H 0.05 2.62 6.02 -2.39 -0.01 2.61 16 39 H 0.00 -0.01 7.74 -2.39 -0.02 -0.03 16 40 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 41 H 0.06 2.19 7.93 -2.39 -0.02 2.17 16 42 H 0.02 0.76 6.64 -2.39 -0.02 0.75 16 43 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.06 1.24 7.54 -2.39 -0.02 1.23 16 46 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 47 H 0.08 2.41 5.92 -2.39 -0.01 2.39 16 48 H 0.08 1.74 7.46 -2.39 -0.02 1.72 16 Total: -1.00 -68.12 375.07 3.31 -64.81 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.53 Total: 24.54 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 7.13 Total: 13.70 kcal Atomic # 7 Polarization: -117.56 SS G_CDS: -5.44 Total: -123.00 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.94 Total: -26.77 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -68.12 3.31 -64.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942180165.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.581 kcal (2) G-P(sol) polarization free energy of solvation -68.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds