Wall clock time and date at job start Tue Mar 31 2020 17:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38355 * 119.41086 * 2 1 4 4 C 1.38337 * 119.45612 * 179.77068 * 3 2 1 5 5 C 1.50701 * 120.82345 * 180.23516 * 4 3 2 6 6 C 1.39983 * 118.34981 * 0.47315 * 4 3 2 7 7 C 1.47531 * 120.59688 * 179.76172 * 6 4 3 8 8 O 1.21593 * 119.99565 * 269.72052 * 7 6 4 9 9 N 1.34772 * 120.00026 * 89.72175 * 7 6 4 10 10 C 1.46504 * 119.99951 * 179.72593 * 9 7 6 11 11 H 1.08998 * 109.45836 * 325.27721 * 10 9 7 12 12 C 1.53048 * 109.45910 * 85.24403 * 10 9 7 13 13 C 1.53188 * 109.31064 * 181.38624 * 12 10 9 14 14 N 1.46924 * 108.77731 * 305.36694 * 13 12 10 15 15 C 1.36931 * 120.63323 * 233.63037 * 14 13 12 16 16 H 1.08000 * 120.00277 * 152.78816 * 15 14 13 17 17 C 1.38819 * 120.00064 * 332.78854 * 15 14 13 18 18 N 1.31610 * 120.00136 * 159.75245 * 17 15 14 19 19 Si 1.86804 * 119.99625 * 339.75461 * 17 15 14 20 20 H 1.48501 * 109.47031 * 94.90099 * 19 17 15 21 21 H 1.48501 * 109.46933 * 214.89958 * 19 17 15 22 22 H 1.48492 * 109.47151 * 334.89888 * 19 17 15 23 23 C 1.46928 * 118.73682 * 53.60954 * 14 13 12 24 24 C 1.53038 * 109.46125 * 205.30103 * 10 9 7 25 25 H 1.08998 * 109.49760 * 298.56255 * 24 10 9 26 26 C 1.52999 * 109.49451 * 58.66167 * 24 10 9 27 27 C 1.40279 * 118.80731 * 359.48192 * 6 4 3 28 28 O 1.35424 * 119.80074 * 180.27376 * 27 6 4 29 29 N 1.31885 * 119.40194 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47186 * 270.02930 * 1 2 3 31 31 H 1.09000 * 109.46908 * 30.01735 * 1 2 3 32 32 H 1.09001 * 109.47653 * 150.02276 * 1 2 3 33 33 H 1.07999 * 120.26975 * 359.97438 * 3 2 1 34 34 H 1.09006 * 109.46606 * 270.24372 * 5 4 3 35 35 H 1.09002 * 109.47486 * 30.24359 * 5 4 3 36 36 H 1.08994 * 109.47362 * 150.24602 * 5 4 3 37 37 H 0.96996 * 120.00202 * 359.97438 * 9 7 6 38 38 H 1.08994 * 109.49552 * 301.33997 * 12 10 9 39 39 H 1.08999 * 109.49735 * 61.43895 * 12 10 9 40 40 H 1.09002 * 109.58689 * 65.15283 * 13 12 10 41 41 H 1.08996 * 109.58569 * 185.57833 * 13 12 10 42 42 H 0.97003 * 120.00140 * 180.02562 * 18 17 15 43 43 H 1.09004 * 109.58967 * 66.18143 * 23 14 13 44 44 H 1.09003 * 109.58758 * 186.60327 * 23 14 13 45 45 H 1.08996 * 109.47363 * 60.00114 * 26 24 10 46 46 H 1.09002 * 109.46902 * 179.97438 * 26 24 10 47 47 H 1.08996 * 109.47360 * 299.99646 * 26 24 10 48 48 H 0.96695 * 114.00283 * 90.00756 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5698 1.2063 0.0048 5 6 4.3409 2.5011 0.0103 6 6 4.2355 -0.0251 -0.0006 7 6 5.7097 -0.0817 -0.0011 8 8 6.3168 -0.1056 -1.0544 9 7 6.3835 -0.1069 1.1658 10 6 7.8472 -0.1693 1.1653 11 1 8.1847 -0.7720 0.3222 12 6 8.4177 1.2455 1.0412 13 6 9.9475 1.1735 1.0062 14 7 10.4135 0.4365 2.1887 15 6 11.3458 0.9836 3.0292 16 1 11.3718 0.6932 4.0691 17 6 12.2575 1.9115 2.5447 18 7 12.8745 2.7240 3.3762 19 14 12.6086 2.0071 0.7124 20 1 11.7520 3.0532 0.0982 21 1 14.0378 2.3496 0.4995 22 1 12.3151 0.6946 0.0831 23 6 9.8598 -0.8987 2.4524 24 6 8.3310 -0.8032 2.4715 25 1 8.0152 -0.1875 3.3136 26 6 7.7338 -2.2050 2.6106 27 6 3.4757 -1.2042 0.0004 28 8 4.0990 -2.4065 0.0009 29 7 2.1545 -1.1490 0.0005 30 1 -0.3633 0.0005 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3634 -0.8902 -0.5135 33 1 1.6412 2.1375 -0.0004 34 1 4.5266 2.8176 -1.0161 35 1 3.7623 3.2665 0.5275 36 1 5.2915 2.3557 0.5233 37 1 5.8992 -0.0875 2.0060 38 1 8.0539 1.7051 0.1223 39 1 8.1011 1.8418 1.8970 40 1 10.2683 0.6551 0.1026 41 1 10.3611 2.1819 1.0177 42 1 13.5113 3.3726 3.0376 43 1 10.1735 -1.5861 1.6668 44 1 10.2155 -1.2576 3.4182 45 1 8.0512 -2.8204 1.7688 46 1 8.0790 -2.6563 3.5408 47 1 6.6460 -2.1370 2.6211 48 1 4.2803 -2.7553 0.8843 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942546672.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:42 Heat of formation + Delta-G solvation = -25.285849 kcal Electronic energy + Delta-G solvation = -29640.826062 eV Core-core repulsion = 25696.420425 eV Total energy + Delta-G solvation = -3944.405638 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.24287 -39.63252 -37.87208 -37.66076 -34.76046 -34.52441 -32.73796 -32.11486 -31.64653 -30.34077 -28.61849 -27.87349 -26.44134 -25.12690 -23.65009 -22.44008 -21.81502 -21.43355 -20.50011 -19.74599 -18.74767 -17.78471 -17.45101 -16.76789 -16.39433 -15.88976 -15.23729 -14.85489 -14.66804 -14.43156 -14.38975 -13.93444 -13.71580 -13.62799 -13.50571 -13.34922 -13.22403 -13.08083 -12.79846 -12.76536 -12.34019 -12.21822 -12.11602 -11.98676 -11.93289 -11.69550 -11.61598 -11.06031 -10.65941 -10.61806 -10.39184 -10.15744 -10.04135 -9.93772 -9.84724 -9.58927 -9.51200 -9.12608 -8.89317 -8.64059 -7.02389 -5.97272 -3.33781 0.45225 0.75432 2.49763 2.94374 3.18387 3.27003 3.32817 3.49236 3.52619 4.11807 4.18011 4.51404 4.52747 4.64297 4.83428 4.87289 4.92409 4.98323 5.04237 5.16182 5.20865 5.24011 5.26153 5.27951 5.39636 5.47754 5.58115 5.66396 5.71103 5.78143 5.80762 5.84284 5.97189 6.04222 6.07006 6.10433 6.20284 6.31139 6.36070 6.55082 6.59260 6.65374 6.66812 6.88106 7.10673 7.47162 7.52192 7.92296 8.16301 8.29625 8.90379 9.69258 10.06196 11.18444 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020636 B = 0.003025 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.548272 B = 9255.353357 C = 9862.939775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.166 3.834 3 C -0.187 4.187 4 C 0.013 3.987 5 C -0.126 4.126 6 C -0.200 4.200 7 C 0.573 3.427 8 O -0.522 6.522 9 N -0.714 5.714 10 C 0.156 3.844 11 H 0.085 0.915 12 C -0.142 4.142 13 C 0.129 3.871 14 N -0.606 5.606 15 C -0.261 4.261 16 H 0.086 0.914 17 C 0.024 3.976 18 N -0.908 5.908 19 Si 0.881 3.119 20 H -0.289 1.289 21 H -0.303 1.303 22 H -0.268 1.268 23 C 0.158 3.842 24 C -0.116 4.116 25 H 0.076 0.924 26 C -0.142 4.142 27 C 0.354 3.646 28 O -0.472 6.472 29 N -0.507 5.507 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.144 0.856 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.396 0.604 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.029 0.971 41 H 0.074 0.926 42 H 0.263 0.737 43 H 0.026 0.974 44 H 0.068 0.932 45 H 0.054 0.946 46 H 0.057 0.943 47 H 0.046 0.954 48 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.753 -4.606 -3.042 25.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.028 3.972 3 C -0.207 4.207 4 C 0.005 3.995 5 C -0.183 4.183 6 C -0.207 4.207 7 C 0.356 3.644 8 O -0.398 6.398 9 N -0.364 5.364 10 C 0.053 3.947 11 H 0.103 0.897 12 C -0.182 4.182 13 C 0.003 3.997 14 N -0.329 5.329 15 C -0.389 4.389 16 H 0.104 0.896 17 C -0.175 4.175 18 N -0.551 5.551 19 Si 0.711 3.289 20 H -0.217 1.217 21 H -0.231 1.231 22 H -0.193 1.193 23 C 0.031 3.969 24 C -0.137 4.137 25 H 0.095 0.905 26 C -0.200 4.200 27 C 0.174 3.826 28 O -0.279 6.279 29 N -0.227 5.227 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.162 0.838 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.230 0.770 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.047 0.953 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.044 0.956 44 H 0.087 0.913 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.065 0.935 48 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -24.563 -5.262 -4.365 25.497 hybrid contribution 0.547 0.808 -0.194 0.995 sum -24.016 -4.454 -4.559 24.848 Atomic orbital electron populations 1.20798 0.88126 1.03939 1.03520 1.21175 0.96979 0.87061 0.91954 1.21790 0.93636 0.99645 1.05601 1.20300 0.93663 0.94268 0.91268 1.20973 1.00356 0.92975 1.03982 1.20928 0.95268 0.94068 1.10424 1.17752 0.85741 0.76399 0.84479 1.90835 1.69080 1.48629 1.31223 1.46272 1.08211 1.74275 1.07646 1.21080 0.77047 0.97517 0.99097 0.89669 1.22415 0.98575 0.95840 1.01392 1.21316 0.91244 0.97237 0.89934 1.44393 1.46865 1.13749 1.27926 1.18905 1.07304 1.21219 0.91486 0.89614 1.25264 0.97143 0.97808 0.97270 1.69825 1.30305 1.20608 1.34377 0.86977 0.76265 0.78253 0.87371 1.21669 1.23133 1.19326 1.20923 0.89002 0.87222 0.99746 1.21969 0.99290 0.95911 0.96491 0.90546 1.21764 0.99634 0.96696 1.01872 1.18983 0.86341 0.84427 0.92841 1.84770 1.76645 1.32651 1.33830 1.67043 1.09111 1.30430 1.16131 0.89860 0.90195 0.90116 0.83776 0.89487 0.90048 0.90357 0.76994 0.92337 0.91536 0.95341 0.90778 0.92748 0.95621 0.91349 0.92678 0.92414 0.93535 0.73899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.16 36.01 0.37 -0.23 16 2 C 0.17 1.52 6.78 -82.53 -0.56 0.96 16 3 C -0.19 -1.55 9.41 -39.50 -0.37 -1.92 16 4 C 0.01 0.13 5.95 -103.93 -0.62 -0.49 16 5 C -0.13 -1.14 9.69 36.01 0.35 -0.79 16 6 C -0.20 -2.47 5.66 -104.69 -0.59 -3.06 16 7 C 0.57 8.24 5.39 -12.47 -0.07 8.17 16 8 O -0.52 -9.86 16.77 5.28 0.09 -9.78 16 9 N -0.71 -8.94 4.36 -54.80 -0.24 -9.18 16 10 C 0.16 2.41 1.88 -67.88 -0.13 2.28 16 11 H 0.09 1.50 7.57 -51.93 -0.39 1.11 16 12 C -0.14 -2.53 5.65 -26.61 -0.15 -2.68 16 13 C 0.13 2.82 4.19 -3.71 -0.02 2.80 16 14 N -0.61 -13.99 2.77 -172.32 -0.48 -14.46 16 15 C -0.26 -7.13 10.04 -15.06 -0.15 -7.28 16 16 H 0.09 2.48 8.05 -52.49 -0.42 2.06 16 17 C 0.02 0.69 5.24 -17.43 -0.09 0.60 16 18 N -0.91 -27.58 13.97 55.49 0.78 -26.81 16 19 Si 0.88 22.48 24.35 -169.99 -4.14 18.34 16 20 H -0.29 -7.17 6.70 56.52 0.38 -6.79 16 21 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 22 H -0.27 -6.76 6.45 56.52 0.36 -6.39 16 23 C 0.16 2.93 5.80 -3.71 -0.02 2.91 16 24 C -0.12 -1.70 2.46 -90.50 -0.22 -1.92 16 25 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 26 C -0.14 -1.62 9.03 37.16 0.34 -1.28 16 27 C 0.35 4.35 7.77 -16.61 -0.13 4.22 16 28 O -0.47 -5.50 13.01 -17.96 -0.23 -5.73 16 29 N -0.51 -5.93 10.28 -9.21 -0.09 -6.02 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.29 8.07 -51.93 -0.42 -0.13 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 36 H 0.08 0.81 7.19 -51.93 -0.37 0.44 16 37 H 0.40 3.94 8.29 -40.82 -0.34 3.60 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.03 0.64 6.98 -51.93 -0.36 0.28 16 41 H 0.07 1.78 4.49 -51.93 -0.23 1.54 16 42 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.07 1.26 7.93 -51.93 -0.41 0.84 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.05 0.43 7.36 -51.93 -0.38 0.05 16 48 H 0.40 2.68 9.06 45.56 0.41 3.09 16 LS Contribution 383.62 15.07 5.78 5.78 Total: -1.00 -35.34 383.62 -7.38 -42.72 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.77 Total: 2.84 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -2.07 Total: 2.30 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: -0.04 Total: -56.47 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.15 Total: -15.51 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.14 Total: 18.34 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.34 -7.38 -42.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942546672.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.431 kcal (2) G-P(sol) polarization free energy of solvation -35.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds