Wall clock time and date at job start Tue Mar 31 2020 17:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38355 * 119.41086 * 2 1 4 4 C 1.38337 * 119.45612 * 179.77068 * 3 2 1 5 5 C 1.50701 * 120.82345 * 180.23516 * 4 3 2 6 6 C 1.39983 * 118.34981 * 0.47315 * 4 3 2 7 7 C 1.47531 * 120.59688 * 179.76172 * 6 4 3 8 8 O 1.21593 * 119.99565 * 269.72052 * 7 6 4 9 9 N 1.34772 * 120.00026 * 89.72175 * 7 6 4 10 10 C 1.46504 * 119.99951 * 179.72593 * 9 7 6 11 11 H 1.08998 * 109.45836 * 325.27721 * 10 9 7 12 12 C 1.53048 * 109.45910 * 85.24403 * 10 9 7 13 13 C 1.53188 * 109.31064 * 181.38624 * 12 10 9 14 14 N 1.46924 * 108.77731 * 305.36694 * 13 12 10 15 15 C 1.36931 * 120.63323 * 233.63037 * 14 13 12 16 16 H 1.08000 * 120.00277 * 152.78816 * 15 14 13 17 17 C 1.38819 * 120.00064 * 332.78854 * 15 14 13 18 18 N 1.31610 * 120.00136 * 159.75245 * 17 15 14 19 19 Si 1.86804 * 119.99625 * 339.75461 * 17 15 14 20 20 H 1.48501 * 109.47031 * 94.90099 * 19 17 15 21 21 H 1.48501 * 109.46933 * 214.89958 * 19 17 15 22 22 H 1.48492 * 109.47151 * 334.89888 * 19 17 15 23 23 C 1.46928 * 118.73682 * 53.60954 * 14 13 12 24 24 C 1.53038 * 109.46125 * 205.30103 * 10 9 7 25 25 H 1.08998 * 109.49760 * 298.56255 * 24 10 9 26 26 C 1.52999 * 109.49451 * 58.66167 * 24 10 9 27 27 C 1.40279 * 118.80731 * 359.48192 * 6 4 3 28 28 O 1.35424 * 119.80074 * 180.27376 * 27 6 4 29 29 N 1.31885 * 119.40194 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47186 * 270.02930 * 1 2 3 31 31 H 1.09000 * 109.46908 * 30.01735 * 1 2 3 32 32 H 1.09001 * 109.47653 * 150.02276 * 1 2 3 33 33 H 1.07999 * 120.26975 * 359.97438 * 3 2 1 34 34 H 1.09006 * 109.46606 * 270.24372 * 5 4 3 35 35 H 1.09002 * 109.47486 * 30.24359 * 5 4 3 36 36 H 1.08994 * 109.47362 * 150.24602 * 5 4 3 37 37 H 0.96996 * 120.00202 * 359.97438 * 9 7 6 38 38 H 1.08994 * 109.49552 * 301.33997 * 12 10 9 39 39 H 1.08999 * 109.49735 * 61.43895 * 12 10 9 40 40 H 1.09002 * 109.58689 * 65.15283 * 13 12 10 41 41 H 1.08996 * 109.58569 * 185.57833 * 13 12 10 42 42 H 0.97003 * 120.00140 * 180.02562 * 18 17 15 43 43 H 1.09004 * 109.58967 * 66.18143 * 23 14 13 44 44 H 1.09003 * 109.58758 * 186.60327 * 23 14 13 45 45 H 1.08996 * 109.47363 * 60.00114 * 26 24 10 46 46 H 1.09002 * 109.46902 * 179.97438 * 26 24 10 47 47 H 1.08996 * 109.47360 * 299.99646 * 26 24 10 48 48 H 0.96695 * 114.00283 * 90.00756 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5698 1.2063 0.0048 5 6 4.3409 2.5011 0.0103 6 6 4.2355 -0.0251 -0.0006 7 6 5.7097 -0.0817 -0.0011 8 8 6.3168 -0.1056 -1.0544 9 7 6.3835 -0.1069 1.1658 10 6 7.8472 -0.1693 1.1653 11 1 8.1847 -0.7720 0.3222 12 6 8.4177 1.2455 1.0412 13 6 9.9475 1.1735 1.0062 14 7 10.4135 0.4365 2.1887 15 6 11.3458 0.9836 3.0292 16 1 11.3718 0.6932 4.0691 17 6 12.2575 1.9115 2.5447 18 7 12.8745 2.7240 3.3762 19 14 12.6086 2.0071 0.7124 20 1 11.7520 3.0532 0.0982 21 1 14.0378 2.3496 0.4995 22 1 12.3151 0.6946 0.0831 23 6 9.8598 -0.8987 2.4524 24 6 8.3310 -0.8032 2.4715 25 1 8.0152 -0.1875 3.3136 26 6 7.7338 -2.2050 2.6106 27 6 3.4757 -1.2042 0.0004 28 8 4.0990 -2.4065 0.0009 29 7 2.1545 -1.1490 0.0005 30 1 -0.3633 0.0005 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3634 -0.8902 -0.5135 33 1 1.6412 2.1375 -0.0004 34 1 4.5266 2.8176 -1.0161 35 1 3.7623 3.2665 0.5275 36 1 5.2915 2.3557 0.5233 37 1 5.8992 -0.0875 2.0060 38 1 8.0539 1.7051 0.1223 39 1 8.1011 1.8418 1.8970 40 1 10.2683 0.6551 0.1026 41 1 10.3611 2.1819 1.0177 42 1 13.5113 3.3726 3.0376 43 1 10.1735 -1.5861 1.6668 44 1 10.2155 -1.2576 3.4182 45 1 8.0512 -2.8204 1.7688 46 1 8.0790 -2.6563 3.5408 47 1 6.6460 -2.1370 2.6211 48 1 4.2803 -2.7553 0.8843 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942546672.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:41 Heat of formation + Delta-G solvation = -53.788310 kcal Electronic energy + Delta-G solvation = -29642.062022 eV Core-core repulsion = 25696.420425 eV Total energy + Delta-G solvation = -3945.641597 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.11201 -40.79052 -39.27855 -38.45948 -36.32930 -35.31829 -34.21332 -33.38879 -32.84220 -31.89052 -29.47416 -28.50487 -27.83887 -26.72309 -24.64972 -23.74832 -23.10479 -22.68405 -21.60193 -21.06765 -19.54417 -19.00436 -18.57676 -18.25733 -17.71491 -17.04355 -16.63940 -16.12512 -15.93678 -15.72895 -15.25815 -15.14683 -14.91983 -14.88826 -14.69858 -14.34881 -14.23411 -14.10572 -13.95157 -13.83405 -13.59715 -13.32227 -13.25765 -13.00232 -12.85345 -12.81005 -12.70974 -12.63279 -12.24335 -12.12992 -11.96902 -11.76158 -11.52386 -11.48487 -11.25466 -10.78862 -10.63615 -10.51637 -10.12898 -9.86676 -8.98411 -8.18593 -5.50024 -0.30713 0.01704 1.26877 1.38109 1.39569 1.46557 1.98431 2.35328 2.38522 2.51893 3.02381 3.29379 3.40462 3.53348 3.58944 3.70852 3.86708 3.98890 4.07094 4.18394 4.20330 4.27281 4.38697 4.48887 4.55464 4.56836 4.58652 4.62304 4.71835 4.78663 4.82045 4.87815 4.87993 4.95040 5.01006 5.04111 5.08125 5.11441 5.16641 5.18325 5.29319 5.39384 5.50183 5.52008 5.84509 6.11415 6.38967 6.46781 6.79202 6.88082 7.08547 7.59261 8.00551 9.00945 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020636 B = 0.003025 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.548272 B = 9255.353357 C = 9862.939775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.162 3.838 3 C -0.176 4.176 4 C 0.008 3.992 5 C -0.126 4.126 6 C -0.221 4.221 7 C 0.581 3.419 8 O -0.573 6.573 9 N -0.695 5.695 10 C 0.166 3.834 11 H 0.066 0.934 12 C -0.131 4.131 13 C 0.126 3.874 14 N -0.619 5.619 15 C -0.243 4.243 16 H 0.062 0.938 17 C -0.030 4.030 18 N -0.953 5.953 19 Si 0.936 3.064 20 H -0.281 1.281 21 H -0.310 1.310 22 H -0.265 1.265 23 C 0.151 3.849 24 C -0.102 4.102 25 H 0.079 0.921 26 C -0.135 4.135 27 C 0.344 3.656 28 O -0.489 6.489 29 N -0.529 5.529 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.182 0.818 34 H 0.083 0.917 35 H 0.111 0.889 36 H 0.060 0.940 37 H 0.413 0.587 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.024 0.976 41 H 0.051 0.949 42 H 0.261 0.739 43 H 0.030 0.970 44 H 0.068 0.932 45 H 0.051 0.949 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.308 -4.824 -3.197 28.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.025 3.975 3 C -0.196 4.196 4 C 0.000 4.000 5 C -0.182 4.182 6 C -0.228 4.228 7 C 0.367 3.633 8 O -0.452 6.452 9 N -0.345 5.345 10 C 0.062 3.938 11 H 0.085 0.915 12 C -0.171 4.171 13 C 0.000 4.000 14 N -0.343 5.343 15 C -0.372 4.372 16 H 0.080 0.920 17 C -0.225 4.225 18 N -0.600 5.600 19 Si 0.766 3.234 20 H -0.208 1.208 21 H -0.239 1.239 22 H -0.189 1.189 23 C 0.025 3.975 24 C -0.123 4.123 25 H 0.098 0.902 26 C -0.193 4.193 27 C 0.165 3.835 28 O -0.299 6.299 29 N -0.250 5.250 30 H 0.118 0.882 31 H 0.124 0.876 32 H 0.092 0.908 33 H 0.199 0.801 34 H 0.101 0.899 35 H 0.130 0.870 36 H 0.079 0.921 37 H 0.250 0.750 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.042 0.958 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.048 0.952 44 H 0.087 0.913 45 H 0.070 0.930 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -28.177 -5.521 -4.493 29.062 hybrid contribution 1.532 0.831 -0.094 1.746 sum -26.645 -4.690 -4.587 27.440 Atomic orbital electron populations 1.20931 0.85520 1.04904 1.04820 1.21877 0.98676 0.86713 0.90277 1.22160 0.92780 1.00907 1.03733 1.20537 0.94707 0.93783 0.90949 1.21007 0.99927 0.93337 1.03907 1.20786 0.93607 0.95267 1.13146 1.18042 0.86660 0.74862 0.83781 1.90808 1.70364 1.50983 1.32999 1.45967 1.06876 1.73441 1.08247 1.20763 0.78630 0.95583 0.98851 0.91538 1.22243 0.95639 0.97638 1.01583 1.21271 0.93874 0.95687 0.89178 1.44521 1.46476 1.15630 1.27631 1.18897 1.07270 1.19960 0.91121 0.92027 1.25796 0.97823 0.98340 1.00552 1.69930 1.31919 1.22102 1.36020 0.86076 0.75528 0.78467 0.83351 1.20773 1.23894 1.18950 1.21154 0.91559 0.84955 0.99790 1.21776 0.96307 0.98237 0.95942 0.90230 1.21722 1.01099 0.94072 1.02388 1.19073 0.86745 0.84396 0.93283 1.84720 1.76783 1.32773 1.35643 1.67128 1.08759 1.31892 1.17196 0.88209 0.87635 0.90764 0.80074 0.89896 0.87022 0.92132 0.75022 0.92222 0.91215 0.95791 0.93057 0.92958 0.95209 0.91332 0.92990 0.91201 0.90923 0.71904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 10.16 71.24 0.72 -0.06 16 2 C 0.16 2.47 6.78 42.58 0.29 2.76 16 3 C -0.18 -2.29 9.41 22.32 0.21 -2.08 16 4 C 0.01 0.15 5.95 -19.42 -0.12 0.03 16 5 C -0.13 -1.97 9.69 71.24 0.69 -1.28 16 6 C -0.22 -5.16 5.66 -19.91 -0.11 -5.27 16 7 C 0.58 16.23 5.39 86.70 0.47 16.70 16 8 O -0.57 -21.70 16.77 -4.01 -0.07 -21.77 16 9 N -0.69 -16.30 4.36 -445.57 -1.94 -18.25 16 10 C 0.17 4.94 1.88 45.02 0.08 5.03 16 11 H 0.07 2.30 7.57 -2.39 -0.02 2.28 16 12 C -0.13 -4.59 5.65 30.67 0.17 -4.41 16 13 C 0.13 5.49 4.19 86.36 0.36 5.85 16 14 N -0.62 -28.56 2.77 -699.10 -1.94 -30.49 16 15 C -0.24 -13.50 10.04 84.04 0.84 -12.65 16 16 H 0.06 3.67 8.05 -2.91 -0.02 3.65 16 17 C -0.03 -1.76 5.24 84.87 0.44 -1.31 16 18 N -0.95 -59.54 13.97 21.65 0.30 -59.23 16 19 Si 0.94 47.54 24.35 68.60 1.67 49.21 16 20 H -0.28 -13.70 6.70 99.48 0.67 -13.04 16 21 H -0.31 -15.96 7.11 99.48 0.71 -15.25 16 22 H -0.26 -13.10 6.45 99.48 0.64 -12.46 16 23 C 0.15 5.48 5.80 86.36 0.50 5.98 16 24 C -0.10 -2.81 2.46 -10.72 -0.03 -2.83 16 25 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 26 C -0.14 -2.70 9.03 71.98 0.65 -2.05 16 27 C 0.34 8.02 7.77 85.13 0.66 8.69 16 28 O -0.49 -10.94 13.01 -87.19 -1.13 -12.08 16 29 N -0.53 -11.41 10.28 -296.06 -3.04 -14.46 16 30 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.11 0.27 8.07 -2.39 -0.02 0.25 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16 34 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.11 1.03 8.10 -2.39 -0.02 1.01 16 36 H 0.06 1.17 7.19 -2.39 -0.02 1.15 16 37 H 0.41 7.17 8.29 -92.71 -0.77 6.40 16 38 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.07 2.39 8.14 -2.39 -0.02 2.38 16 40 H 0.02 1.07 6.98 -2.39 -0.02 1.06 16 41 H 0.05 2.47 4.49 -2.39 -0.01 2.46 16 42 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 43 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.07 2.47 7.93 -2.39 -0.02 2.45 16 45 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.07 1.10 7.36 -2.39 -0.02 1.08 16 48 H 0.42 5.02 9.06 -74.06 -0.67 4.35 16 Total: -1.00 -79.53 383.62 -0.86 -80.39 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -0.55 Total: 13.60 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: 5.85 Total: 13.08 kcal Atomic # 7 Polarization: -115.81 SS G_CDS: -6.62 Total: -122.43 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -1.20 Total: -33.84 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 1.67 Total: 49.21 kcal Total: -79.53 -0.86 -80.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942546672.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.602 kcal (2) G-P(sol) polarization free energy of solvation -79.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds