Wall clock time and date at job start Tue Mar 31 2020 17:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38358 * 119.40770 * 2 1 4 4 C 1.38330 * 119.46158 * 179.97438 * 3 2 1 5 5 C 1.50704 * 120.83052 * 179.97438 * 4 3 2 6 6 C 1.39992 * 118.34911 * 359.97438 * 4 3 2 7 7 C 1.47520 * 120.59973 * 179.97438 * 6 4 3 8 8 O 1.21600 * 119.99753 * 90.00165 * 7 6 4 9 9 N 1.34772 * 120.00532 * 270.00548 * 7 6 4 10 10 C 1.46505 * 120.00111 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.44758 * 35.02981 * 10 9 7 12 12 C 1.53043 * 109.48324 * 275.08351 * 10 9 7 13 13 C 1.53187 * 109.33534 * 178.64929 * 12 10 9 14 14 N 1.46921 * 108.78334 * 54.61946 * 13 12 10 15 15 C 1.36930 * 120.63580 * 126.40894 * 14 13 12 16 16 H 1.08004 * 120.00251 * 332.59734 * 15 14 13 17 17 C 1.38817 * 120.00119 * 152.59474 * 15 14 13 18 18 N 1.31621 * 120.00079 * 159.31758 * 17 15 14 19 19 Si 1.86796 * 119.99855 * 339.31485 * 17 15 14 20 20 H 1.48504 * 109.47139 * 92.97115 * 19 17 15 21 21 H 1.48504 * 109.47073 * 212.97249 * 19 17 15 22 22 H 1.48500 * 109.47382 * 332.96892 * 19 17 15 23 23 C 1.46932 * 118.73553 * 306.39187 * 14 13 12 24 24 C 1.53044 * 109.45863 * 154.99981 * 10 9 7 25 25 H 1.08996 * 109.49856 * 61.40211 * 24 10 9 26 26 C 1.53001 * 109.49525 * 301.33134 * 24 10 9 27 27 C 1.40284 * 118.80471 * 0.27618 * 6 4 3 28 28 O 1.35417 * 119.79958 * 179.70096 * 27 6 4 29 29 N 1.31876 * 119.40952 * 180.02562 * 2 1 3 30 30 H 1.09006 * 109.46988 * 89.99909 * 1 2 3 31 31 H 1.08993 * 109.47076 * 210.00215 * 1 2 3 32 32 H 1.09003 * 109.47211 * 330.00285 * 1 2 3 33 33 H 1.08006 * 120.27027 * 359.97438 * 3 2 1 34 34 H 1.09004 * 109.47001 * 270.02618 * 5 4 3 35 35 H 1.08999 * 109.46900 * 30.02387 * 5 4 3 36 36 H 1.08995 * 109.47518 * 150.02144 * 5 4 3 37 37 H 0.96994 * 120.00173 * 359.97438 * 9 7 6 38 38 H 1.08995 * 109.49812 * 58.67886 * 12 10 9 39 39 H 1.09001 * 109.49590 * 298.61313 * 12 10 9 40 40 H 1.09000 * 109.58588 * 294.82569 * 13 12 10 41 41 H 1.09001 * 109.58641 * 174.40639 * 13 12 10 42 42 H 0.96996 * 119.99804 * 179.97438 * 18 17 15 43 43 H 1.08997 * 109.58553 * 293.81701 * 23 14 13 44 44 H 1.08996 * 109.70369 * 173.46232 * 23 14 13 45 45 H 1.08998 * 109.47182 * 300.07008 * 26 24 10 46 46 H 1.08998 * 109.46823 * 180.02562 * 26 24 10 47 47 H 1.09007 * 109.46825 * 60.07200 * 26 24 10 48 48 H 0.96704 * 113.99868 * 90.00074 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5696 1.2066 0.0005 5 6 4.3408 2.5014 0.0000 6 6 4.2355 -0.0248 0.0016 7 6 5.7096 -0.0813 0.0017 8 8 6.3171 -0.1037 1.0548 9 7 6.3831 -0.1081 -1.1654 10 6 7.8471 -0.1648 -1.1653 11 1 8.1868 -0.7679 -0.3233 12 6 8.4128 1.2515 -1.0382 13 6 9.9428 1.1854 -1.0044 14 7 10.4109 0.4528 -2.1888 15 6 11.3411 1.0051 -3.0283 16 1 11.4189 2.0787 -3.1167 17 6 12.1841 0.1851 -3.7658 18 7 12.7784 0.6513 -4.8437 19 14 12.4752 -1.5801 -3.2283 20 1 11.5118 -2.4735 -3.9204 21 1 13.8616 -1.9816 -3.5776 22 1 12.2838 -1.6884 -1.7597 23 6 9.8623 -0.8839 -2.4551 24 6 8.3330 -0.7947 -2.4727 25 1 8.0142 -0.1790 -3.3137 26 6 7.7412 -2.1985 -2.6140 27 6 3.4758 -1.2041 -0.0038 28 8 4.0991 -2.4062 -0.0090 29 7 2.1545 -1.1488 -0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6410 2.1376 -0.0004 34 1 4.5267 2.8131 -1.0279 35 1 3.7620 3.2692 0.5134 36 1 5.2913 2.3585 0.5139 37 1 5.8986 -0.0905 -2.0055 38 1 8.0479 1.7078 -0.1180 39 1 8.0932 1.8489 -1.8921 40 1 10.2663 0.6664 -0.1022 41 1 10.3525 2.1955 -1.0141 42 1 13.3677 0.0784 -5.3587 43 1 10.1792 -1.5718 -1.6712 44 1 10.2185 -1.2417 -3.4210 45 1 8.0603 -2.8137 -1.7728 46 1 8.0879 -2.6468 -3.5451 47 1 6.6530 -2.1346 -2.6254 48 1 4.2800 -2.7593 0.8729 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942546673.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:48 Heat of formation + Delta-G solvation = -26.401313 kcal Electronic energy + Delta-G solvation = -29633.296598 eV Core-core repulsion = 25688.842590 eV Total energy + Delta-G solvation = -3944.454008 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.23378 -39.61478 -37.87000 -37.62636 -34.69364 -34.51919 -32.50537 -32.10032 -31.94889 -30.23657 -28.61539 -27.87964 -26.22348 -25.11055 -23.69983 -22.73177 -21.90258 -20.88854 -20.48213 -19.73693 -18.72236 -17.86409 -17.47810 -16.75787 -16.38510 -15.84534 -15.23653 -14.84155 -14.64987 -14.39938 -14.31612 -13.91337 -13.76133 -13.66863 -13.36301 -13.31681 -13.26370 -13.09260 -12.76527 -12.57616 -12.41426 -12.31469 -12.20192 -11.94116 -11.91162 -11.65466 -11.45234 -10.92606 -10.67616 -10.52097 -10.42125 -10.30309 -10.01849 -9.91753 -9.76710 -9.58726 -9.47302 -9.13837 -8.85568 -8.63966 -7.00775 -5.96713 -3.32600 0.44969 0.75401 2.48342 2.97041 3.10297 3.30868 3.42298 3.48404 3.51549 4.11601 4.17507 4.51076 4.52190 4.64016 4.83982 4.90177 4.93991 5.00969 5.05023 5.16207 5.22261 5.24598 5.28794 5.34069 5.46008 5.47102 5.58298 5.68124 5.69679 5.80054 5.88683 5.90935 6.02333 6.10002 6.11005 6.13569 6.29492 6.33039 6.41681 6.60292 6.60754 6.67969 6.70991 6.90556 7.12136 7.49424 7.54006 7.94013 8.15937 8.31140 8.91879 9.70133 10.07652 11.19201 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022979 B = 0.002947 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.232458 B = 9500.494253 C =10047.205364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.166 3.834 3 C -0.187 4.187 4 C 0.013 3.987 5 C -0.127 4.127 6 C -0.201 4.201 7 C 0.575 3.425 8 O -0.534 6.534 9 N -0.706 5.706 10 C 0.156 3.844 11 H 0.084 0.916 12 C -0.142 4.142 13 C 0.151 3.849 14 N -0.606 5.606 15 C -0.260 4.260 16 H 0.086 0.914 17 C 0.024 3.976 18 N -0.908 5.908 19 Si 0.880 3.120 20 H -0.288 1.288 21 H -0.303 1.303 22 H -0.270 1.270 23 C 0.136 3.864 24 C -0.115 4.115 25 H 0.078 0.922 26 C -0.145 4.145 27 C 0.355 3.645 28 O -0.475 6.475 29 N -0.507 5.507 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.144 0.856 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.398 0.602 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.025 0.975 41 H 0.066 0.934 42 H 0.263 0.737 43 H 0.027 0.973 44 H 0.077 0.923 45 H 0.052 0.948 46 H 0.056 0.944 47 H 0.051 0.949 48 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.552 0.152 9.659 26.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.028 3.972 3 C -0.207 4.207 4 C 0.005 3.995 5 C -0.183 4.183 6 C -0.208 4.208 7 C 0.359 3.641 8 O -0.412 6.412 9 N -0.355 5.355 10 C 0.053 3.947 11 H 0.102 0.898 12 C -0.182 4.182 13 C 0.024 3.976 14 N -0.329 5.329 15 C -0.388 4.388 16 H 0.104 0.896 17 C -0.175 4.175 18 N -0.551 5.551 19 Si 0.710 3.290 20 H -0.215 1.215 21 H -0.231 1.231 22 H -0.195 1.195 23 C 0.009 3.991 24 C -0.136 4.136 25 H 0.096 0.904 26 C -0.203 4.203 27 C 0.175 3.825 28 O -0.283 6.283 29 N -0.227 5.227 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.162 0.838 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.232 0.768 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.043 0.957 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.045 0.955 44 H 0.095 0.905 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.070 0.930 48 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -24.368 -0.626 9.684 26.229 hybrid contribution 0.495 -0.495 0.202 0.729 sum -23.873 -1.121 9.885 25.863 Atomic orbital electron populations 1.20799 0.88147 1.03873 1.03575 1.21175 0.96978 0.87075 0.91924 1.21788 0.93650 0.99627 1.05668 1.20296 0.93652 0.94274 0.91307 1.20971 1.00576 0.92952 1.03801 1.20976 0.95305 0.94060 1.10416 1.17729 0.85710 0.76196 0.84473 1.90824 1.69235 1.49935 1.31163 1.46238 1.08174 1.73226 1.07844 1.21081 0.77071 0.97497 0.99067 0.89757 1.22401 0.98795 0.95766 1.01230 1.20892 0.90598 0.96879 0.89187 1.44402 1.46813 1.15865 1.25845 1.18919 1.09662 0.93143 1.17063 0.89626 1.25281 0.97379 0.97782 0.97093 1.69835 1.33163 1.36876 1.15189 0.86997 0.76221 0.86161 0.79618 1.21532 1.23111 1.19459 1.21374 0.89646 0.87975 1.00070 1.21979 0.98936 0.96125 0.96514 0.90392 1.21792 1.00122 0.96610 1.01764 1.19008 0.86322 0.84501 0.92677 1.84697 1.76621 1.32584 1.34356 1.67048 1.09158 1.30445 1.16098 0.89855 0.90133 0.90196 0.83802 0.89504 0.90124 0.90231 0.76772 0.92243 0.91749 0.95680 0.91531 0.92755 0.95468 0.90488 0.92872 0.92520 0.92960 0.73434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.16 36.00 0.37 -0.23 16 2 C 0.17 1.51 6.78 -82.53 -0.56 0.95 16 3 C -0.19 -1.52 9.41 -39.50 -0.37 -1.89 16 4 C 0.01 0.13 5.95 -103.93 -0.62 -0.49 16 5 C -0.13 -1.06 9.69 36.01 0.35 -0.72 16 6 C -0.20 -2.44 5.66 -104.69 -0.59 -3.03 16 7 C 0.57 8.12 5.38 -12.48 -0.07 8.05 16 8 O -0.53 -9.31 16.77 5.28 0.09 -9.22 16 9 N -0.71 -9.52 4.37 -54.81 -0.24 -9.76 16 10 C 0.16 2.50 1.88 -67.88 -0.13 2.37 16 11 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 12 C -0.14 -2.36 5.65 -26.61 -0.15 -2.51 16 13 C 0.15 2.98 6.52 -3.72 -0.02 2.96 16 14 N -0.61 -14.19 2.77 -172.32 -0.48 -14.67 16 15 C -0.26 -7.16 10.03 -15.06 -0.15 -7.31 16 16 H 0.09 2.51 8.06 -52.48 -0.42 2.09 16 17 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 18 N -0.91 -27.62 13.97 55.49 0.78 -26.85 16 19 Si 0.88 22.28 24.35 -169.99 -4.14 18.15 16 20 H -0.29 -6.99 6.62 56.52 0.37 -6.61 16 21 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 22 H -0.27 -6.75 6.64 56.52 0.38 -6.38 16 23 C 0.14 2.91 3.49 -3.71 -0.01 2.89 16 24 C -0.11 -1.95 2.46 -90.50 -0.22 -2.18 16 25 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 26 C -0.14 -2.15 9.02 37.16 0.34 -1.81 16 27 C 0.35 4.34 7.77 -16.61 -0.13 4.21 16 28 O -0.47 -5.53 13.01 -17.94 -0.23 -5.77 16 29 N -0.51 -5.92 10.28 -9.21 -0.09 -6.02 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.27 8.07 -51.93 -0.42 -0.15 16 33 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 36 H 0.08 0.83 7.19 -51.93 -0.37 0.46 16 37 H 0.40 4.74 8.29 -40.82 -0.34 4.40 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 42 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.03 0.59 7.08 -51.93 -0.37 0.22 16 44 H 0.08 1.81 4.50 -51.93 -0.23 1.57 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.05 0.69 7.36 -51.93 -0.38 0.31 16 48 H 0.41 3.17 9.06 45.56 0.41 3.59 16 LS Contribution 383.81 15.07 5.78 5.78 Total: -1.00 -34.23 383.81 -7.37 -41.60 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -6.77 Total: 4.90 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -2.07 Total: 1.85 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: -0.04 Total: -57.29 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.15 Total: -14.99 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.14 Total: 18.15 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.23 -7.37 -41.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942546673.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.194 kcal (2) G-P(sol) polarization free energy of solvation -34.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds