Wall clock time and date at job start Tue Mar 31 2020 17:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38357 * 119.40953 * 2 1 4 4 C 1.38340 * 119.45870 * 179.76179 * 3 2 1 5 5 C 1.50705 * 120.82287 * 180.23107 * 4 3 2 6 6 C 1.39981 * 118.35068 * 0.48093 * 4 3 2 7 7 C 1.47524 * 120.59968 * 179.75401 * 6 4 3 8 8 O 1.21591 * 119.99715 * 269.72219 * 7 6 4 9 9 N 1.34773 * 120.00226 * 89.72244 * 7 6 4 10 10 C 1.46492 * 120.00231 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.46159 * 35.02371 * 10 9 7 12 12 C 1.53047 * 109.45786 * 275.06604 * 10 9 7 13 13 C 1.52760 * 109.38266 * 301.21717 * 12 10 9 14 14 N 1.46929 * 109.00960 * 305.59022 * 13 12 10 15 15 C 1.36938 * 120.63068 * 233.58060 * 14 13 12 16 16 H 1.07996 * 120.00094 * 152.30848 * 15 14 13 17 17 C 1.38813 * 119.99821 * 332.30991 * 15 14 13 18 18 N 1.31611 * 120.00201 * 342.49359 * 17 15 14 19 19 Si 1.86804 * 119.99923 * 162.76680 * 17 15 14 20 20 H 1.48497 * 109.46990 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47259 * 119.99842 * 19 17 15 22 22 H 1.48499 * 109.47133 * 240.00312 * 19 17 15 23 23 C 1.46929 * 118.73866 * 53.30862 * 14 13 12 24 24 C 1.53039 * 109.46351 * 154.99826 * 10 9 7 25 25 H 1.09000 * 109.52347 * 178.61778 * 24 10 9 26 26 C 1.52996 * 109.49629 * 298.70028 * 24 10 9 27 27 C 1.40282 * 118.80315 * 359.47930 * 6 4 3 28 28 O 1.35428 * 119.80138 * 180.27434 * 27 6 4 29 29 N 1.31882 * 119.41041 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47130 * 270.02410 * 1 2 3 31 31 H 1.08996 * 109.47108 * 30.02094 * 1 2 3 32 32 H 1.08998 * 109.47241 * 150.02118 * 1 2 3 33 33 H 1.08005 * 120.26496 * 0.02562 * 3 2 1 34 34 H 1.08997 * 109.47474 * 270.25193 * 5 4 3 35 35 H 1.09006 * 109.46841 * 30.25742 * 5 4 3 36 36 H 1.08999 * 109.46506 * 150.24849 * 5 4 3 37 37 H 0.97004 * 119.99462 * 359.97438 * 9 7 6 38 38 H 1.08994 * 109.49959 * 61.29626 * 12 10 9 39 39 H 1.09001 * 109.49807 * 181.36072 * 12 10 9 40 40 H 1.08999 * 109.51393 * 185.70211 * 13 12 10 41 41 H 1.09003 * 109.43370 * 65.42441 * 13 12 10 42 42 H 0.97008 * 119.99943 * 179.97438 * 18 17 15 43 43 H 1.08997 * 109.58437 * 66.43102 * 23 14 13 44 44 H 1.08997 * 109.58308 * 186.71283 * 23 14 13 45 45 H 1.09005 * 109.47218 * 179.83670 * 26 24 10 46 46 H 1.08993 * 109.47324 * 299.83576 * 26 24 10 47 47 H 1.09004 * 109.47251 * 59.84253 * 26 24 10 48 48 H 0.96706 * 114.00176 * 89.99994 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5698 1.2065 0.0050 5 6 4.3408 2.5013 0.0104 6 6 4.2356 -0.0248 -0.0004 7 6 5.7097 -0.0814 -0.0009 8 8 6.3168 -0.1053 -1.0541 9 7 6.3835 -0.1067 1.1660 10 6 7.8474 -0.1623 1.1656 11 1 8.2324 0.4130 0.3237 12 6 8.3022 -1.6181 1.0384 13 6 7.7361 -2.4296 2.2022 14 7 8.1193 -1.7854 3.4660 15 6 8.7573 -2.4972 4.4465 16 1 9.4158 -1.9930 5.1382 17 6 8.5577 -3.8669 4.5514 18 7 7.5239 -4.4284 3.9614 19 14 9.7523 -4.9122 5.5362 20 1 10.8185 -4.0464 6.1007 21 1 9.0251 -5.5868 6.6413 22 1 10.3634 -5.9343 4.6491 23 6 7.8102 -0.3615 3.6553 24 6 8.3806 0.4281 2.4729 25 1 9.4687 0.3648 2.4842 26 6 7.9530 1.8930 2.5834 27 6 3.4758 -1.2041 0.0005 28 8 4.0991 -2.4064 0.0010 29 7 2.1546 -1.1489 0.0005 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6410 2.1375 0.0004 34 1 4.5266 2.8179 -1.0159 35 1 3.7621 3.2666 0.5277 36 1 5.2914 2.3559 0.5235 37 1 5.8991 -0.0872 2.0062 38 1 7.9419 -2.0309 0.0962 39 1 9.3911 -1.6625 1.0623 40 1 8.1397 -3.4416 2.1708 41 1 6.6493 -2.4649 2.1250 42 1 7.3846 -5.3856 4.0344 43 1 6.7297 -0.2248 3.6989 44 1 8.2608 -0.0102 4.5835 45 1 8.3305 2.3123 3.5161 46 1 8.3591 2.4545 1.7421 47 1 6.8649 1.9559 2.5710 48 1 4.2804 -2.7551 0.8846 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942546674.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:50 Heat of formation + Delta-G solvation = -53.613066 kcal Electronic energy + Delta-G solvation = -30275.453031 eV Core-core repulsion = 26329.819033 eV Total energy + Delta-G solvation = -3945.633998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.10164 -40.82993 -39.06639 -38.43963 -36.00415 -35.28084 -33.94253 -32.92419 -32.78164 -31.75278 -29.39738 -28.45224 -27.39368 -26.95519 -24.67031 -23.81185 -23.00120 -22.60894 -21.68050 -20.14111 -19.52881 -19.06470 -18.59572 -18.22948 -17.11386 -16.83665 -16.52851 -16.03727 -15.85701 -15.57265 -15.31964 -15.22968 -14.88336 -14.72689 -14.51875 -14.28456 -14.13224 -14.00614 -13.90741 -13.54538 -13.23232 -13.17013 -12.99151 -12.97680 -12.80215 -12.71348 -12.60620 -12.54618 -12.38495 -12.16382 -11.96347 -11.68179 -11.49433 -11.33827 -11.12202 -10.60391 -10.53874 -10.48934 -10.07092 -9.84723 -8.67078 -7.87324 -5.31152 -0.28541 0.04571 1.43250 1.44941 1.48613 1.57290 2.10180 2.35543 2.50963 2.57664 3.28412 3.43395 3.56855 3.62024 3.69737 3.81974 3.97415 4.07445 4.11774 4.20078 4.31480 4.40667 4.51804 4.58156 4.61202 4.64758 4.68089 4.76859 4.80729 4.82082 4.96325 4.97894 5.01751 5.02210 5.09862 5.13590 5.17885 5.20267 5.31609 5.42999 5.48689 5.53473 5.55784 5.65270 5.73434 6.35162 6.38657 6.45574 6.81792 7.10708 7.15044 7.86605 8.37194 9.18498 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014086 B = 0.003754 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.363635 B = 7456.239108 C = 8483.555771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.156 3.844 3 C -0.174 4.174 4 C 0.008 3.992 5 C -0.121 4.121 6 C -0.222 4.222 7 C 0.582 3.418 8 O -0.573 6.573 9 N -0.691 5.691 10 C 0.167 3.833 11 H 0.079 0.921 12 C -0.145 4.145 13 C 0.191 3.809 14 N -0.607 5.607 15 C -0.259 4.259 16 H 0.068 0.932 17 C -0.047 4.047 18 N -0.930 5.930 19 Si 0.959 3.041 20 H -0.266 1.266 21 H -0.293 1.293 22 H -0.296 1.296 23 C 0.150 3.850 24 C -0.106 4.106 25 H 0.079 0.921 26 C -0.133 4.133 27 C 0.334 3.666 28 O -0.495 6.495 29 N -0.534 5.534 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.070 0.930 33 H 0.189 0.811 34 H 0.087 0.913 35 H 0.114 0.886 36 H 0.064 0.936 37 H 0.405 0.595 38 H 0.043 0.957 39 H 0.062 0.938 40 H 0.046 0.954 41 H 0.003 0.997 42 H 0.248 0.752 43 H 0.021 0.979 44 H 0.059 0.941 45 H 0.069 0.931 46 H 0.062 0.938 47 H 0.059 0.941 48 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.599 18.164 -5.100 22.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.019 3.981 3 C -0.194 4.194 4 C 0.000 4.000 5 C -0.177 4.177 6 C -0.229 4.229 7 C 0.368 3.632 8 O -0.453 6.453 9 N -0.342 5.342 10 C 0.063 3.937 11 H 0.097 0.903 12 C -0.185 4.185 13 C 0.065 3.935 14 N -0.330 5.330 15 C -0.389 4.389 16 H 0.086 0.914 17 C -0.243 4.243 18 N -0.576 5.576 19 Si 0.788 3.212 20 H -0.190 1.190 21 H -0.220 1.220 22 H -0.223 1.223 23 C 0.025 3.975 24 C -0.126 4.126 25 H 0.097 0.903 26 C -0.191 4.191 27 C 0.155 3.845 28 O -0.305 6.305 29 N -0.255 5.255 30 H 0.115 0.885 31 H 0.129 0.871 32 H 0.089 0.911 33 H 0.206 0.794 34 H 0.106 0.894 35 H 0.133 0.867 36 H 0.083 0.917 37 H 0.241 0.759 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.021 0.979 42 H 0.057 0.943 43 H 0.038 0.962 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -11.608 17.229 -6.383 21.733 hybrid contribution 1.128 -1.220 1.167 2.030 sum -10.479 16.009 -5.216 19.832 Atomic orbital electron populations 1.20929 0.85451 1.04959 1.04705 1.21968 0.98789 0.86837 0.90512 1.22200 0.92872 1.00735 1.03552 1.20639 0.94723 0.93844 0.90774 1.21016 0.99943 0.92539 1.04191 1.20867 0.94019 0.95267 1.12766 1.17950 0.86565 0.74938 0.83773 1.90755 1.70240 1.51603 1.32663 1.46022 1.07518 1.72726 1.07914 1.20819 0.78960 0.95324 0.98640 0.90338 1.22333 1.00693 0.96933 0.98528 1.20279 0.94854 0.95212 0.83179 1.44257 1.68585 1.06376 1.13739 1.19516 1.19020 0.90820 1.09572 0.91390 1.25680 0.98313 0.99282 1.00999 1.70165 1.28157 1.10196 1.49121 0.85328 0.79173 0.78832 0.77838 1.18999 1.22040 1.22267 1.21076 0.96487 0.83586 0.96380 1.21802 1.00929 0.96150 0.93732 0.90311 1.21708 1.01631 0.93190 1.02590 1.19240 0.87009 0.84554 0.93678 1.84681 1.76946 1.33466 1.35367 1.67092 1.08778 1.32431 1.17226 0.88465 0.87067 0.91073 0.79390 0.89416 0.86702 0.91701 0.75860 0.93782 0.91968 0.93585 0.97901 0.94333 0.96167 0.92204 0.91243 0.91852 0.92240 0.72489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 10.16 71.23 0.72 -0.53 16 2 C 0.16 3.24 6.78 42.58 0.29 3.53 16 3 C -0.17 -2.86 9.41 22.32 0.21 -2.65 16 4 C 0.01 0.17 5.95 -19.42 -0.12 0.06 16 5 C -0.12 -1.84 9.69 71.24 0.69 -1.15 16 6 C -0.22 -6.61 5.66 -19.91 -0.11 -6.72 16 7 C 0.58 19.57 5.38 86.69 0.47 20.03 16 8 O -0.57 -23.61 16.77 -4.00 -0.07 -23.67 16 9 N -0.69 -21.27 3.60 -445.60 -1.60 -22.88 16 10 C 0.17 5.47 2.21 45.02 0.10 5.57 16 11 H 0.08 2.58 7.58 -2.39 -0.02 2.56 16 12 C -0.14 -5.80 5.75 30.53 0.18 -5.62 16 13 C 0.19 9.00 5.03 86.22 0.43 9.43 16 14 N -0.61 -28.54 3.00 -699.92 -2.10 -30.64 16 15 C -0.26 -13.68 9.59 84.03 0.81 -12.88 16 16 H 0.07 3.50 7.88 -2.91 -0.02 3.47 16 17 C -0.05 -2.57 4.91 84.86 0.42 -2.15 16 18 N -0.93 -53.94 11.20 21.65 0.24 -53.70 16 19 Si 0.96 44.40 29.59 68.60 2.03 46.43 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 21 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 22 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 23 C 0.15 5.46 5.51 86.36 0.48 5.94 16 24 C -0.11 -3.12 2.67 -10.72 -0.03 -3.14 16 25 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 26 C -0.13 -2.84 9.05 71.98 0.65 -2.19 16 27 C 0.33 10.91 7.77 85.13 0.66 11.58 16 28 O -0.49 -17.63 13.01 -87.24 -1.14 -18.76 16 29 N -0.53 -15.78 10.28 -296.06 -3.04 -18.82 16 30 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.11 0.63 8.07 -2.39 -0.02 0.61 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.19 1.30 8.06 -2.91 -0.02 1.28 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 35 H 0.11 0.93 8.10 -2.38 -0.02 0.91 16 36 H 0.06 1.15 7.19 -2.39 -0.02 1.14 16 37 H 0.40 11.84 6.71 -92.71 -0.62 11.22 16 38 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.05 2.55 6.04 -2.39 -0.01 2.53 16 41 H 0.00 0.14 7.74 -2.39 -0.02 0.13 16 42 H 0.25 14.06 8.31 -92.70 -0.77 13.29 16 43 H 0.02 0.72 6.64 -2.39 -0.02 0.70 16 44 H 0.06 2.14 7.93 -2.39 -0.02 2.13 16 45 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 46 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.06 1.17 7.53 -2.38 -0.02 1.15 16 48 H 0.41 12.71 9.06 -74.05 -0.67 12.03 16 Total: -1.00 -74.20 386.26 -0.14 -74.34 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: -0.30 Total: 28.61 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: 5.84 Total: 19.09 kcal Atomic # 7 Polarization: -119.53 SS G_CDS: -6.50 Total: -126.03 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -1.20 Total: -42.44 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -74.20 -0.14 -74.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942546674.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.722 kcal (2) G-P(sol) polarization free energy of solvation -74.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds