Wall clock time and date at job start Tue Mar 31 2020 17:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38359 * 119.40643 * 2 1 4 4 C 1.38339 * 119.45704 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.82469 * 180.02562 * 4 3 2 6 6 C 1.39992 * 118.34857 * 0.02562 * 4 3 2 7 7 C 1.47520 * 120.59684 * 180.02562 * 6 4 3 8 8 O 1.21585 * 120.00133 * 89.99522 * 7 6 4 9 9 N 1.34779 * 119.99464 * 269.99269 * 7 6 4 10 10 C 1.46503 * 119.99858 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.44945 * 324.97011 * 10 9 7 12 12 C 1.53038 * 109.45778 * 84.93354 * 10 9 7 13 13 C 1.53193 * 109.31180 * 58.65918 * 12 10 9 14 14 N 1.46922 * 108.77778 * 54.63249 * 13 12 10 15 15 C 1.36934 * 120.63331 * 126.41481 * 14 13 12 16 16 H 1.07996 * 120.00228 * 207.66535 * 15 14 13 17 17 C 1.38812 * 119.99808 * 27.65448 * 15 14 13 18 18 N 1.31621 * 119.99877 * 17.38718 * 17 15 14 19 19 Si 1.86800 * 119.99995 * 197.37866 * 17 15 14 20 20 H 1.48493 * 109.47269 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46942 * 120.00539 * 19 17 15 22 22 H 1.48504 * 109.47111 * 240.00270 * 19 17 15 23 23 C 1.46931 * 118.73691 * 306.39365 * 14 13 12 24 24 C 1.53037 * 109.46456 * 205.00244 * 10 9 7 25 25 H 1.08993 * 109.49938 * 181.39178 * 24 10 9 26 26 C 1.53006 * 109.52337 * 61.31370 * 24 10 9 27 27 C 1.40281 * 118.80488 * 0.26915 * 6 4 3 28 28 O 1.35426 * 119.79693 * 179.72835 * 27 6 4 29 29 N 1.31877 * 119.40500 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47589 * 89.99247 * 1 2 3 31 31 H 1.08996 * 109.47121 * 209.99501 * 1 2 3 32 32 H 1.09001 * 109.47007 * 329.99673 * 1 2 3 33 33 H 1.07997 * 120.26964 * 0.02942 * 3 2 1 34 34 H 1.08996 * 109.47275 * 269.97727 * 5 4 3 35 35 H 1.08996 * 109.46999 * 29.98141 * 5 4 3 36 36 H 1.09005 * 109.46757 * 149.98007 * 5 4 3 37 37 H 0.96990 * 120.00312 * 0.02562 * 9 7 6 38 38 H 1.08997 * 109.50157 * 298.70590 * 12 10 9 39 39 H 1.09008 * 109.49689 * 178.60567 * 12 10 9 40 40 H 1.09000 * 109.58324 * 294.84259 * 13 12 10 41 41 H 1.08997 * 109.58442 * 174.42301 * 13 12 10 42 42 H 0.97001 * 119.99724 * 180.02562 * 18 17 15 43 43 H 1.08996 * 109.58583 * 293.81694 * 23 14 13 44 44 H 1.09001 * 109.58040 * 173.39319 * 23 14 13 45 45 H 1.09009 * 109.46960 * 300.08787 * 26 24 10 46 46 H 1.08999 * 109.47203 * 60.08159 * 26 24 10 47 47 H 1.08991 * 109.47269 * 180.08584 * 26 24 10 48 48 H 0.96698 * 114.00010 * 90.00523 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5698 1.2065 -0.0005 5 6 4.3408 2.5013 0.0000 6 6 4.2356 -0.0249 -0.0016 7 6 5.7097 -0.0815 -0.0017 8 8 6.3172 -0.1056 1.0513 9 7 6.3830 -0.1064 -1.1690 10 6 7.8470 -0.1620 -1.1691 11 1 8.2321 0.4133 -0.3272 12 6 8.3018 -1.6178 -1.0425 13 6 7.7302 -2.4304 -2.2085 14 7 8.1178 -1.7846 -3.4700 15 6 8.7547 -2.4963 -4.4513 16 1 9.4159 -1.9928 -5.1409 17 6 8.5506 -3.8651 -4.5595 18 7 7.5154 -4.4247 -3.9700 19 14 9.7452 -4.9128 -5.5418 20 1 10.8166 -4.0498 -6.1006 21 1 10.3491 -5.9389 -4.6543 22 1 9.0196 -5.5827 -6.6509 23 6 7.8087 -0.3606 -3.6588 24 6 8.3796 0.4287 -2.4765 25 1 9.4676 0.3651 -2.4879 26 6 7.9526 1.8938 -2.5870 27 6 3.4758 -1.2041 -0.0079 28 8 4.0991 -2.4063 -0.0146 29 7 2.1545 -1.1489 -0.0005 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5137 32 1 -0.3633 0.8900 0.5139 33 1 1.6411 2.1375 0.0005 34 1 4.5267 2.8140 -1.0275 35 1 3.7621 3.2686 0.5143 36 1 5.2915 2.3578 0.5137 37 1 5.8984 -0.0868 -2.0089 38 1 7.9419 -2.0308 -0.1002 39 1 9.3907 -1.6622 -1.0674 40 1 6.6433 -2.4625 -2.1333 41 1 8.1306 -3.4437 -2.1786 42 1 7.3730 -5.3812 -4.0453 43 1 6.7282 -0.2239 -3.7019 44 1 8.2611 -0.0084 -4.5859 45 1 6.8644 1.9570 -2.5755 46 1 8.3580 2.4549 -1.7450 47 1 8.3311 2.3133 -3.5191 48 1 4.2803 -2.7603 0.8668 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942546675.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:55 Heat of formation + Delta-G solvation = -28.473627 kcal Electronic energy + Delta-G solvation = -30247.261156 eV Core-core repulsion = 26302.717286 eV Total energy + Delta-G solvation = -3944.543870 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.00576 -39.49530 -37.57171 -37.31735 -34.33155 -34.22137 -32.50314 -31.86650 -31.09490 -30.07988 -28.41012 -27.69334 -25.86842 -25.19938 -23.53654 -22.32189 -21.70504 -21.08633 -20.52817 -18.57825 -18.42159 -17.81543 -17.26589 -16.67961 -15.73454 -15.44208 -14.90088 -14.71216 -14.40282 -14.34073 -14.01406 -13.81829 -13.67170 -13.52496 -13.27685 -13.16791 -13.08942 -12.77910 -12.61530 -12.53337 -12.13578 -12.11669 -11.98257 -11.64034 -11.49496 -11.36326 -11.08840 -10.82417 -10.69895 -10.32831 -10.20131 -10.10545 -10.01988 -9.72040 -9.69007 -9.42402 -9.35363 -8.89731 -8.61703 -8.43578 -6.65736 -5.76364 -3.19724 0.69015 0.97481 2.72554 3.23027 3.38063 3.39312 3.46223 3.48062 3.67606 4.32960 4.35883 4.50216 4.77079 4.84222 5.02778 5.12188 5.15707 5.23544 5.31028 5.32341 5.35280 5.36740 5.43719 5.48713 5.62307 5.62474 5.79069 5.81436 5.86681 5.95606 5.98414 6.07655 6.15234 6.26752 6.32049 6.35414 6.43496 6.64142 6.67222 6.76596 6.90787 6.98209 7.42207 7.45085 7.73344 7.76592 7.81012 7.81963 8.41391 8.46033 9.22474 9.85865 10.41923 11.31232 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014044 B = 0.003750 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.252483 B = 7464.758165 C = 8486.249207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.165 3.835 3 C -0.191 4.191 4 C 0.009 3.991 5 C -0.123 4.123 6 C -0.200 4.200 7 C 0.576 3.424 8 O -0.544 6.544 9 N -0.694 5.694 10 C 0.160 3.840 11 H 0.073 0.927 12 C -0.153 4.153 13 C 0.174 3.826 14 N -0.591 5.591 15 C -0.255 4.255 16 H 0.065 0.935 17 C 0.004 3.996 18 N -0.897 5.897 19 Si 0.900 3.100 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.291 1.291 23 C 0.152 3.848 24 C -0.119 4.119 25 H 0.083 0.917 26 C -0.141 4.141 27 C 0.361 3.639 28 O -0.466 6.466 29 N -0.506 5.506 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.142 0.858 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.402 0.598 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.023 0.977 41 H 0.085 0.915 42 H 0.253 0.747 43 H 0.012 0.988 44 H 0.056 0.944 45 H 0.049 0.951 46 H 0.048 0.952 47 H 0.054 0.946 48 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.474 14.543 8.919 20.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.027 3.973 3 C -0.211 4.211 4 C 0.001 3.999 5 C -0.180 4.180 6 C -0.207 4.207 7 C 0.360 3.640 8 O -0.422 6.422 9 N -0.344 5.344 10 C 0.056 3.944 11 H 0.091 0.909 12 C -0.193 4.193 13 C 0.048 3.952 14 N -0.313 5.313 15 C -0.385 4.385 16 H 0.083 0.917 17 C -0.195 4.195 18 N -0.541 5.541 19 Si 0.730 3.270 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.218 1.218 23 C 0.025 3.975 24 C -0.140 4.140 25 H 0.101 0.899 26 C -0.199 4.199 27 C 0.181 3.819 28 O -0.274 6.274 29 N -0.227 5.227 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.160 0.840 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.238 0.762 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.041 0.959 41 H 0.103 0.897 42 H 0.063 0.937 43 H 0.029 0.971 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.073 0.927 48 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -10.479 13.571 9.033 19.380 hybrid contribution 0.819 -0.169 -0.451 0.950 sum -9.660 13.402 8.581 18.616 Atomic orbital electron populations 1.20786 0.88301 1.03701 1.03526 1.21161 0.96926 0.87154 0.92035 1.21727 0.93623 0.99486 1.06249 1.20237 0.93642 0.94156 0.91887 1.20929 1.00450 0.93080 1.03528 1.20980 0.95412 0.94049 1.10237 1.17677 0.85710 0.76158 0.84431 1.90779 1.69262 1.50853 1.31299 1.46107 1.08007 1.72295 1.08009 1.20952 0.78257 0.97587 0.97632 0.90875 1.22558 1.00883 0.95156 1.00730 1.20734 0.96354 0.96369 0.81699 1.44077 1.68323 1.04555 1.14392 1.19190 1.19152 0.90414 1.09749 0.91690 1.25037 0.96833 0.98167 0.99451 1.70062 1.26371 1.10595 1.47114 0.86265 0.80830 0.80515 0.79393 1.20292 1.21579 1.21775 1.20894 0.95791 0.86100 0.94720 1.21955 1.01413 0.94286 0.96336 0.89909 1.21769 1.00908 0.96120 1.01137 1.19081 0.86242 0.84804 0.91792 1.84810 1.76419 1.32191 1.33937 1.67077 1.09292 1.30323 1.15982 0.89904 0.90168 0.90369 0.84019 0.89739 0.90323 0.90432 0.76189 0.92706 0.91839 0.95905 0.89659 0.93678 0.97063 0.92517 0.93198 0.93261 0.92695 0.73592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.16 36.01 0.37 -0.44 16 2 C 0.17 1.89 6.78 -82.53 -0.56 1.33 16 3 C -0.19 -1.91 9.41 -39.50 -0.37 -2.29 16 4 C 0.01 0.10 5.95 -103.93 -0.62 -0.51 16 5 C -0.12 -1.15 9.69 36.01 0.35 -0.80 16 6 C -0.20 -2.97 5.66 -104.69 -0.59 -3.56 16 7 C 0.58 9.56 5.38 -12.48 -0.07 9.49 16 8 O -0.54 -10.40 16.77 5.29 0.09 -10.32 16 9 N -0.69 -11.38 3.60 -54.81 -0.20 -11.58 16 10 C 0.16 2.74 2.21 -67.89 -0.15 2.59 16 11 H 0.07 1.25 7.58 -51.93 -0.39 0.85 16 12 C -0.15 -3.06 5.77 -26.61 -0.15 -3.22 16 13 C 0.17 4.18 5.05 -3.71 -0.02 4.16 16 14 N -0.59 -14.45 2.99 -172.32 -0.52 -14.97 16 15 C -0.26 -6.94 9.59 -15.06 -0.14 -7.08 16 16 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 17 C 0.00 0.11 4.91 -17.43 -0.09 0.03 16 18 N -0.90 -26.29 11.19 55.49 0.62 -25.67 16 19 Si 0.90 21.76 29.59 -169.99 -5.03 16.73 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 C 0.15 3.00 5.50 -3.71 -0.02 2.98 16 24 C -0.12 -1.94 2.67 -90.50 -0.24 -2.18 16 25 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 26 C -0.14 -1.81 9.06 37.16 0.34 -1.47 16 27 C 0.36 5.65 7.77 -16.61 -0.13 5.52 16 28 O -0.47 -7.58 13.01 -17.97 -0.23 -7.81 16 29 N -0.51 -7.43 10.28 -9.21 -0.09 -7.52 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.40 8.07 -51.93 -0.42 -0.02 16 33 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 36 H 0.08 0.86 7.19 -51.93 -0.37 0.48 16 37 H 0.40 6.67 6.71 -40.82 -0.27 6.39 16 38 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.27 8.14 -51.92 -0.42 0.84 16 40 H 0.02 0.59 7.74 -51.93 -0.40 0.19 16 41 H 0.09 2.34 6.04 -51.93 -0.31 2.03 16 42 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.01 0.23 6.64 -51.93 -0.34 -0.12 16 44 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 45 H 0.05 0.61 7.54 -51.92 -0.39 0.22 16 46 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.40 4.80 9.06 45.56 0.41 5.22 16 LS Contribution 386.29 15.07 5.82 5.82 Total: -1.00 -33.66 386.29 -8.33 -41.99 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -6.68 Total: 8.78 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -2.10 Total: 4.55 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: -0.19 Total: -59.74 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.15 Total: -18.13 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.66 -8.33 -41.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942546675.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.513 kcal (2) G-P(sol) polarization free energy of solvation -33.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds