Wall clock time and date at job start Tue Mar 31 2020 17:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38359 * 119.40643 * 2 1 4 4 C 1.38339 * 119.45704 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.82469 * 180.02562 * 4 3 2 6 6 C 1.39992 * 118.34857 * 0.02562 * 4 3 2 7 7 C 1.47520 * 120.59684 * 180.02562 * 6 4 3 8 8 O 1.21585 * 120.00133 * 89.99522 * 7 6 4 9 9 N 1.34779 * 119.99464 * 269.99269 * 7 6 4 10 10 C 1.46503 * 119.99858 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.44945 * 324.97011 * 10 9 7 12 12 C 1.53038 * 109.45778 * 84.93354 * 10 9 7 13 13 C 1.53193 * 109.31180 * 58.65918 * 12 10 9 14 14 N 1.46922 * 108.77778 * 54.63249 * 13 12 10 15 15 C 1.36934 * 120.63331 * 126.41481 * 14 13 12 16 16 H 1.07996 * 120.00228 * 207.66535 * 15 14 13 17 17 C 1.38812 * 119.99808 * 27.65448 * 15 14 13 18 18 N 1.31621 * 119.99877 * 17.38718 * 17 15 14 19 19 Si 1.86800 * 119.99995 * 197.37866 * 17 15 14 20 20 H 1.48493 * 109.47269 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46942 * 120.00539 * 19 17 15 22 22 H 1.48504 * 109.47111 * 240.00270 * 19 17 15 23 23 C 1.46931 * 118.73691 * 306.39365 * 14 13 12 24 24 C 1.53037 * 109.46456 * 205.00244 * 10 9 7 25 25 H 1.08993 * 109.49938 * 181.39178 * 24 10 9 26 26 C 1.53006 * 109.52337 * 61.31370 * 24 10 9 27 27 C 1.40281 * 118.80488 * 0.26915 * 6 4 3 28 28 O 1.35426 * 119.79693 * 179.72835 * 27 6 4 29 29 N 1.31877 * 119.40500 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47589 * 89.99247 * 1 2 3 31 31 H 1.08996 * 109.47121 * 209.99501 * 1 2 3 32 32 H 1.09001 * 109.47007 * 329.99673 * 1 2 3 33 33 H 1.07997 * 120.26964 * 0.02942 * 3 2 1 34 34 H 1.08996 * 109.47275 * 269.97727 * 5 4 3 35 35 H 1.08996 * 109.46999 * 29.98141 * 5 4 3 36 36 H 1.09005 * 109.46757 * 149.98007 * 5 4 3 37 37 H 0.96990 * 120.00312 * 0.02562 * 9 7 6 38 38 H 1.08997 * 109.50157 * 298.70590 * 12 10 9 39 39 H 1.09008 * 109.49689 * 178.60567 * 12 10 9 40 40 H 1.09000 * 109.58324 * 294.84259 * 13 12 10 41 41 H 1.08997 * 109.58442 * 174.42301 * 13 12 10 42 42 H 0.97001 * 119.99724 * 180.02562 * 18 17 15 43 43 H 1.08996 * 109.58583 * 293.81694 * 23 14 13 44 44 H 1.09001 * 109.58040 * 173.39319 * 23 14 13 45 45 H 1.09009 * 109.46960 * 300.08787 * 26 24 10 46 46 H 1.08999 * 109.47203 * 60.08159 * 26 24 10 47 47 H 1.08991 * 109.47269 * 180.08584 * 26 24 10 48 48 H 0.96698 * 114.00010 * 90.00523 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5698 1.2065 -0.0005 5 6 4.3408 2.5013 0.0000 6 6 4.2356 -0.0249 -0.0016 7 6 5.7097 -0.0815 -0.0017 8 8 6.3172 -0.1056 1.0513 9 7 6.3830 -0.1064 -1.1690 10 6 7.8470 -0.1620 -1.1691 11 1 8.2321 0.4133 -0.3272 12 6 8.3018 -1.6178 -1.0425 13 6 7.7302 -2.4304 -2.2085 14 7 8.1178 -1.7846 -3.4700 15 6 8.7547 -2.4963 -4.4513 16 1 9.4159 -1.9928 -5.1409 17 6 8.5506 -3.8651 -4.5595 18 7 7.5154 -4.4247 -3.9700 19 14 9.7452 -4.9128 -5.5418 20 1 10.8166 -4.0498 -6.1006 21 1 10.3491 -5.9389 -4.6543 22 1 9.0196 -5.5827 -6.6509 23 6 7.8087 -0.3606 -3.6588 24 6 8.3796 0.4287 -2.4765 25 1 9.4676 0.3651 -2.4879 26 6 7.9526 1.8938 -2.5870 27 6 3.4758 -1.2041 -0.0079 28 8 4.0991 -2.4063 -0.0146 29 7 2.1545 -1.1489 -0.0005 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5137 32 1 -0.3633 0.8900 0.5139 33 1 1.6411 2.1375 0.0005 34 1 4.5267 2.8140 -1.0275 35 1 3.7621 3.2686 0.5143 36 1 5.2915 2.3578 0.5137 37 1 5.8984 -0.0868 -2.0089 38 1 7.9419 -2.0308 -0.1002 39 1 9.3907 -1.6622 -1.0674 40 1 6.6433 -2.4625 -2.1333 41 1 8.1306 -3.4437 -2.1786 42 1 7.3730 -5.3812 -4.0453 43 1 6.7282 -0.2239 -3.7019 44 1 8.2611 -0.0084 -4.5859 45 1 6.8644 1.9570 -2.5755 46 1 8.3580 2.4549 -1.7450 47 1 8.3311 2.3133 -3.5191 48 1 4.2803 -2.7603 0.8668 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942546675.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:55 Heat of formation + Delta-G solvation = -53.794561 kcal Electronic energy + Delta-G solvation = -30248.359154 eV Core-core repulsion = 26302.717286 eV Total energy + Delta-G solvation = -3945.641868 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.08838 -40.82198 -39.05838 -38.44103 -36.00271 -35.26140 -33.94770 -32.91008 -32.78628 -31.74383 -29.39232 -28.44950 -27.40760 -26.95046 -24.67336 -23.82551 -22.98616 -22.62568 -21.67087 -20.13092 -19.53358 -19.07572 -18.59970 -18.25780 -16.99376 -16.83728 -16.60915 -16.03794 -15.83171 -15.58887 -15.35069 -15.19447 -14.87798 -14.73080 -14.52602 -14.24547 -14.16023 -13.98121 -13.89415 -13.53590 -13.23875 -13.16791 -12.98151 -12.94215 -12.84713 -12.71758 -12.61710 -12.55069 -12.39056 -12.16300 -11.95933 -11.69281 -11.49524 -11.33049 -11.12204 -10.61132 -10.54951 -10.46175 -10.05301 -9.85379 -8.68034 -7.86923 -5.32786 -0.28457 0.05141 1.42885 1.44404 1.46764 1.56941 2.14221 2.32709 2.50338 2.64576 3.27728 3.42286 3.56961 3.61266 3.68733 3.81137 3.98044 4.07486 4.11130 4.21713 4.31576 4.40022 4.52756 4.58118 4.60200 4.65540 4.68653 4.76939 4.79850 4.81410 4.95720 4.97100 5.01716 5.02620 5.09249 5.13265 5.16685 5.19895 5.30888 5.42550 5.48007 5.53958 5.55529 5.64190 5.74984 6.37626 6.41181 6.44297 6.82632 7.09085 7.13686 7.85662 8.37026 9.18693 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014044 B = 0.003750 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.252483 B = 7464.758165 C = 8486.249207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.156 3.844 3 C -0.175 4.175 4 C 0.008 3.992 5 C -0.121 4.121 6 C -0.223 4.223 7 C 0.583 3.417 8 O -0.573 6.573 9 N -0.690 5.690 10 C 0.166 3.834 11 H 0.084 0.916 12 C -0.142 4.142 13 C 0.191 3.809 14 N -0.608 5.608 15 C -0.260 4.260 16 H 0.071 0.929 17 C -0.051 4.051 18 N -0.934 5.934 19 Si 0.964 3.036 20 H -0.263 1.263 21 H -0.294 1.294 22 H -0.293 1.293 23 C 0.149 3.851 24 C -0.106 4.106 25 H 0.081 0.919 26 C -0.133 4.133 27 C 0.335 3.665 28 O -0.493 6.493 29 N -0.535 5.535 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.112 0.888 33 H 0.188 0.812 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.057 0.943 37 H 0.402 0.598 38 H 0.046 0.954 39 H 0.064 0.936 40 H -0.005 1.005 41 H 0.045 0.955 42 H 0.247 0.753 43 H 0.014 0.986 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.292 18.157 8.703 23.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.019 3.981 3 C -0.194 4.194 4 C 0.000 4.000 5 C -0.177 4.177 6 C -0.230 4.230 7 C 0.369 3.631 8 O -0.454 6.454 9 N -0.339 5.339 10 C 0.062 3.938 11 H 0.102 0.898 12 C -0.182 4.182 13 C 0.065 3.935 14 N -0.331 5.331 15 C -0.391 4.391 16 H 0.088 0.912 17 C -0.247 4.247 18 N -0.580 5.580 19 Si 0.793 3.207 20 H -0.187 1.187 21 H -0.221 1.221 22 H -0.221 1.221 23 C 0.024 3.976 24 C -0.126 4.126 25 H 0.099 0.901 26 C -0.190 4.190 27 C 0.156 3.844 28 O -0.302 6.302 29 N -0.256 5.256 30 H 0.111 0.889 31 H 0.091 0.909 32 H 0.131 0.869 33 H 0.206 0.794 34 H 0.117 0.883 35 H 0.129 0.871 36 H 0.076 0.924 37 H 0.238 0.762 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.014 0.986 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.032 0.968 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -11.296 17.230 8.811 22.407 hybrid contribution 0.966 -1.245 -0.370 1.619 sum -10.329 15.984 8.442 20.820 Atomic orbital electron populations 1.20928 0.85487 1.05101 1.04535 1.21962 0.98780 0.86863 0.90533 1.22195 0.92891 1.00718 1.03645 1.20646 0.94715 0.93891 0.90728 1.21007 0.99641 0.92424 1.04593 1.20909 0.94075 0.95260 1.12740 1.17922 0.86555 0.74880 0.83744 1.90748 1.70217 1.52201 1.32211 1.46047 1.07607 1.72188 1.08086 1.20852 0.78892 0.95344 0.98719 0.89840 1.22383 1.00651 0.96852 0.98353 1.20342 0.94483 0.95193 0.83448 1.44299 1.68429 1.06358 1.13991 1.19558 1.18864 0.90930 1.09718 0.91155 1.25794 0.98341 0.99453 1.01084 1.70230 1.28304 1.10275 1.49187 0.85254 0.79008 0.78745 0.77723 1.18722 1.22081 1.22069 1.21082 0.96164 0.83779 0.96616 1.21803 1.01003 0.96138 0.93674 0.90058 1.21700 1.01534 0.93126 1.02672 1.19262 0.86982 0.84619 0.93550 1.84761 1.76906 1.33303 1.35270 1.67102 1.08832 1.32398 1.17245 0.88878 0.90856 0.86923 0.79436 0.88270 0.87122 0.92400 0.76241 0.93517 0.91706 0.98644 0.93694 0.94385 0.96818 0.92137 0.92455 0.91564 0.91265 0.72513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 10.16 71.24 0.72 -0.55 16 2 C 0.16 3.26 6.78 42.58 0.29 3.54 16 3 C -0.18 -2.90 9.41 22.32 0.21 -2.69 16 4 C 0.01 0.17 5.95 -19.42 -0.12 0.06 16 5 C -0.12 -1.84 9.69 71.24 0.69 -1.15 16 6 C -0.22 -6.63 5.66 -19.91 -0.11 -6.74 16 7 C 0.58 19.57 5.38 86.69 0.47 20.04 16 8 O -0.57 -22.31 16.77 -3.99 -0.07 -22.37 16 9 N -0.69 -22.65 3.60 -445.59 -1.60 -24.25 16 10 C 0.17 5.62 2.21 45.02 0.10 5.72 16 11 H 0.08 2.74 7.58 -2.39 -0.02 2.72 16 12 C -0.14 -5.86 5.77 30.67 0.18 -5.68 16 13 C 0.19 9.64 5.05 86.36 0.44 10.07 16 14 N -0.61 -30.28 2.99 -699.11 -2.09 -32.37 16 15 C -0.26 -14.33 9.59 84.03 0.81 -13.52 16 16 H 0.07 3.73 7.89 -2.91 -0.02 3.70 16 17 C -0.05 -2.92 4.91 84.86 0.42 -2.50 16 18 N -0.93 -57.09 11.19 21.65 0.24 -56.85 16 19 Si 0.96 45.69 29.59 68.60 2.03 47.72 16 20 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 22 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 23 C 0.15 5.80 5.50 86.36 0.48 6.27 16 24 C -0.11 -3.26 2.67 -10.72 -0.03 -3.29 16 25 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 26 C -0.13 -2.95 9.06 71.98 0.65 -2.30 16 27 C 0.33 10.91 7.77 85.13 0.66 11.57 16 28 O -0.49 -17.42 13.01 -87.21 -1.13 -18.56 16 29 N -0.53 -15.81 10.28 -296.05 -3.04 -18.85 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 32 H 0.11 0.61 8.07 -2.39 -0.02 0.59 16 33 H 0.19 1.33 8.06 -2.91 -0.02 1.31 16 34 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.11 0.98 8.10 -2.39 -0.02 0.96 16 36 H 0.06 1.15 7.19 -2.38 -0.02 1.13 16 37 H 0.40 13.33 6.71 -92.72 -0.62 12.71 16 38 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.06 2.63 8.14 -2.38 -0.02 2.61 16 40 H 0.00 -0.25 7.74 -2.39 -0.02 -0.27 16 41 H 0.04 2.61 6.04 -2.39 -0.01 2.60 16 42 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 43 H 0.01 0.54 6.64 -2.39 -0.02 0.53 16 44 H 0.06 2.29 7.93 -2.39 -0.02 2.27 16 45 H 0.06 1.21 7.54 -2.38 -0.02 1.19 16 46 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.41 11.21 9.06 -74.06 -0.67 10.54 16 Total: -1.00 -77.16 386.29 -0.13 -77.29 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: -0.30 Total: 29.40 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: 5.85 Total: 18.84 kcal Atomic # 7 Polarization: -125.83 SS G_CDS: -6.50 Total: -132.33 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -1.20 Total: -40.93 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -77.16 -0.13 -77.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942546675.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.496 kcal (2) G-P(sol) polarization free energy of solvation -77.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds