Wall clock time and date at job start Tue Mar 31 2020 18:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40205 * 120.36397 * 2 1 4 4 C 1.35340 * 119.94713 * 179.97438 * 3 2 1 5 5 N 1.35763 * 120.70416 * 359.97438 * 4 3 2 6 6 C 1.46499 * 119.62664 * 179.97438 * 5 4 3 7 7 C 1.50692 * 109.47252 * 270.02385 * 6 5 4 8 8 O 1.21284 * 120.00429 * 359.97438 * 7 6 5 9 9 N 1.34783 * 120.00080 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00301 * 179.97438 * 9 7 6 11 11 H 1.09008 * 109.46060 * 325.00589 * 10 9 7 12 12 C 1.53045 * 109.45826 * 84.97339 * 10 9 7 13 13 C 1.53189 * 109.31292 * 181.38779 * 12 10 9 14 14 N 1.46928 * 108.77540 * 305.36597 * 13 12 10 15 15 C 1.36932 * 120.63310 * 233.58423 * 14 13 12 16 16 H 1.08004 * 120.00266 * 151.82480 * 15 14 13 17 17 C 1.38817 * 120.00245 * 331.83378 * 15 14 13 18 18 N 1.31616 * 119.99632 * 343.08287 * 17 15 14 19 19 Si 1.86794 * 120.00401 * 163.08198 * 17 15 14 20 20 H 1.48504 * 109.47351 * 59.99892 * 19 17 15 21 21 H 1.48496 * 109.47324 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47091 * 300.00262 * 19 17 15 23 23 C 1.46928 * 118.73711 * 53.60847 * 14 13 12 24 24 C 1.53033 * 109.46330 * 205.03130 * 10 9 7 25 25 H 1.09004 * 109.49787 * 298.56796 * 24 10 9 26 26 C 1.52998 * 109.49957 * 58.65994 * 24 10 9 27 27 C 1.34663 * 120.74839 * 0.02562 * 5 4 3 28 28 O 1.22062 * 119.97953 * 179.72449 * 27 5 4 29 29 C 1.36390 * 120.37046 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47326 * 90.00164 * 1 2 3 31 31 H 1.08997 * 109.46867 * 210.00131 * 1 2 3 32 32 H 1.09004 * 109.47455 * 329.99929 * 1 2 3 33 33 H 1.08002 * 120.02223 * 359.97438 * 3 2 1 34 34 H 1.08004 * 119.64774 * 180.02562 * 4 3 2 35 35 H 1.09002 * 109.47033 * 30.02307 * 6 5 4 36 36 H 1.08998 * 109.47177 * 150.01985 * 6 5 4 37 37 H 0.97001 * 119.99971 * 0.02562 * 9 7 6 38 38 H 1.08996 * 109.49487 * 301.33756 * 12 10 9 39 39 H 1.08994 * 109.49437 * 61.43553 * 12 10 9 40 40 H 1.08998 * 109.58896 * 65.14876 * 13 12 10 41 41 H 1.08997 * 109.59253 * 185.57870 * 13 12 10 42 42 H 0.96998 * 120.00236 * 179.97438 * 18 17 15 43 43 H 1.08998 * 109.58677 * 66.18143 * 23 14 13 44 44 H 1.09008 * 109.58402 * 186.45755 * 23 14 13 45 45 H 1.09005 * 109.46895 * 60.00183 * 26 24 10 46 46 H 1.09003 * 109.47625 * 179.97438 * 26 24 10 47 47 H 1.08997 * 109.47269 * 300.00419 * 26 24 10 48 48 H 1.08002 * 120.34645 * 0.02646 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2097 0.0000 4 6 3.5691 1.1999 0.0005 5 7 4.2538 0.0276 0.0016 6 6 5.7187 0.0444 0.0016 7 6 6.2210 0.0496 -1.4192 8 8 5.4330 0.0396 -2.3411 9 7 7.5460 0.0652 -1.6655 10 6 8.0344 0.0696 -3.0466 11 1 7.3688 -0.5285 -3.6691 12 6 8.0679 1.5071 -3.5710 13 6 8.5459 1.5045 -5.0264 14 7 9.8362 0.8054 -5.0990 15 6 10.9232 1.4054 -5.6765 16 1 11.9199 1.1421 -5.3544 17 6 10.7443 2.3522 -6.6757 18 7 9.5892 2.4390 -7.3007 19 14 12.1426 3.5030 -7.1334 20 1 13.3070 2.7069 -7.5980 21 1 11.6998 4.4122 -8.2208 22 1 12.5331 4.3043 -5.9457 23 6 9.9378 -0.5499 -4.5409 24 6 9.4442 -0.5240 -3.0909 25 1 10.1157 0.0880 -2.4887 26 6 9.4158 -1.9494 -2.5358 27 6 3.6017 -1.1506 0.0016 28 8 4.2314 -2.1963 -0.0025 29 6 2.1966 -1.1767 0.0005 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 1.6820 2.1487 -0.0004 34 1 4.1102 2.1346 0.0009 35 1 6.0717 0.9388 0.5150 36 1 6.0923 -0.8410 0.5159 37 1 8.1763 0.0729 -0.9282 38 1 7.0678 1.9372 -3.5173 39 1 8.7524 2.0997 -2.9642 40 1 7.8155 0.9890 -5.6500 41 1 8.6663 2.5307 -5.3734 42 1 9.4639 3.1008 -7.9987 43 1 9.3209 -1.2328 -5.1249 44 1 10.9762 -0.8801 -4.5698 45 1 8.7452 -2.5611 -3.1394 46 1 10.4200 -2.3721 -2.5679 47 1 9.0617 -1.9310 -1.5051 48 1 1.6683 -2.1187 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943253708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:54 Heat of formation + Delta-G solvation = -20.258343 kcal Electronic energy + Delta-G solvation = -29065.089496 eV Core-core repulsion = 25120.901867 eV Total energy + Delta-G solvation = -3944.187629 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.63539 -39.68693 -37.69596 -37.15168 -35.42425 -34.56918 -32.74735 -31.27382 -30.82262 -29.98733 -29.40125 -27.20491 -25.86462 -24.84238 -23.89348 -22.44692 -21.70202 -21.01290 -20.42385 -19.41642 -17.74932 -17.69042 -17.43159 -16.67390 -16.20114 -15.76598 -15.34425 -15.06566 -14.78088 -14.42828 -14.30787 -13.96073 -13.86302 -13.63934 -13.56818 -13.26721 -13.01874 -12.84006 -12.69951 -12.56817 -12.33347 -12.06294 -11.93906 -11.84198 -11.48465 -11.32956 -11.08306 -10.83002 -10.67643 -10.39008 -10.31792 -10.26740 -10.08261 -10.02075 -9.81193 -9.76707 -9.45015 -8.76350 -8.44871 -8.13018 -6.70318 -5.80336 -3.23712 0.64371 1.72719 2.30832 2.60352 3.19768 3.36885 3.42803 3.43567 3.59137 4.28183 4.37303 4.47295 4.49783 4.64227 4.76930 4.85363 5.00764 5.11141 5.11999 5.25372 5.29650 5.32254 5.38548 5.49583 5.53346 5.57893 5.74571 5.86445 5.88670 5.97350 6.09103 6.17198 6.23321 6.25926 6.31694 6.32732 6.43907 6.57287 6.63608 6.74732 6.87390 6.89715 6.94785 7.33535 7.56393 7.65371 7.77352 7.91917 8.25268 8.42969 9.18862 9.82063 10.39007 11.28242 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020298 B = 0.002543 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.140644 B =11009.208878 C =11826.198651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.015 3.985 3 C -0.231 4.231 4 C 0.147 3.853 5 N -0.480 5.480 6 C 0.069 3.931 7 C 0.497 3.503 8 O -0.526 6.526 9 N -0.717 5.717 10 C 0.158 3.842 11 H 0.082 0.918 12 C -0.146 4.146 13 C 0.174 3.826 14 N -0.592 5.592 15 C -0.255 4.255 16 H 0.066 0.934 17 C 0.003 3.997 18 N -0.901 5.901 19 Si 0.903 3.097 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.154 3.846 24 C -0.113 4.113 25 H 0.071 0.929 26 C -0.142 4.142 27 C 0.522 3.478 28 O -0.552 6.552 29 C -0.249 4.249 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.145 0.855 34 H 0.161 0.839 35 H 0.120 0.880 36 H 0.128 0.872 37 H 0.396 0.604 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.020 0.980 41 H 0.090 0.910 42 H 0.255 0.745 43 H 0.020 0.980 44 H 0.058 0.942 45 H 0.052 0.948 46 H 0.054 0.946 47 H 0.047 0.953 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.106 -1.491 19.674 23.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.012 3.988 3 C -0.254 4.254 4 C 0.020 3.980 5 N -0.191 5.191 6 C -0.057 4.057 7 C 0.281 3.719 8 O -0.401 6.401 9 N -0.367 5.367 10 C 0.055 3.945 11 H 0.100 0.900 12 C -0.186 4.186 13 C 0.048 3.952 14 N -0.314 5.314 15 C -0.385 4.385 16 H 0.083 0.917 17 C -0.196 4.196 18 N -0.545 5.545 19 Si 0.733 3.267 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.027 3.973 24 C -0.134 4.134 25 H 0.090 0.910 26 C -0.200 4.200 27 C 0.325 3.675 28 O -0.435 6.435 29 C -0.271 4.271 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.163 0.837 34 H 0.178 0.822 35 H 0.138 0.862 36 H 0.145 0.855 37 H 0.230 0.770 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.038 0.962 41 H 0.108 0.892 42 H 0.065 0.935 43 H 0.038 0.962 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.066 0.934 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.274 -2.074 18.821 23.124 hybrid contribution 0.987 0.779 -0.003 1.257 sum -12.287 -1.296 18.818 22.511 Atomic orbital electron populations 1.20926 0.90401 1.03359 1.03231 1.20201 0.96746 0.92684 0.89193 1.20511 0.92349 0.98916 1.13658 1.21895 0.93638 0.89512 0.92963 1.45027 1.07231 1.07281 1.59538 1.21835 0.79749 1.07069 0.97021 1.20563 0.83349 0.77236 0.90760 1.90770 1.55165 1.48669 1.45537 1.46210 1.05976 1.74455 1.10098 1.21099 0.95034 0.98041 0.80364 0.90034 1.22571 1.00056 0.94659 1.01343 1.20751 0.85930 0.99582 0.88978 1.44095 1.08758 1.11057 1.67539 1.19128 0.86593 1.19308 1.13469 0.91670 1.25070 0.96995 1.01613 0.95912 1.70024 1.24027 1.35974 1.24514 0.86363 0.81775 0.80908 0.77659 1.20856 1.21632 1.21056 1.20902 0.98683 0.88235 0.89498 1.21962 0.95197 0.95482 1.00802 0.91015 1.21777 1.01446 0.96734 1.00088 1.17078 0.89354 0.82429 0.78657 1.90953 1.69143 1.30294 1.53109 1.21897 0.92259 0.99533 1.13384 0.90031 0.90886 0.90804 0.83734 0.82157 0.86237 0.85451 0.77047 0.92948 0.92608 0.96183 0.89230 0.93504 0.96188 0.92306 0.92871 0.92680 0.93431 0.83630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 10.03 36.01 0.36 -0.36 16 2 C 0.02 0.14 5.89 -104.55 -0.62 -0.48 16 3 C -0.23 -1.86 9.71 -39.88 -0.39 -2.25 16 4 C 0.15 1.29 10.28 -16.85 -0.17 1.11 16 5 N -0.48 -5.58 2.07 -121.07 -0.25 -5.83 16 6 C 0.07 0.69 5.81 -5.20 -0.03 0.66 16 7 C 0.50 7.10 7.86 -10.99 -0.09 7.01 16 8 O -0.53 -10.07 16.09 5.55 0.09 -9.98 16 9 N -0.72 -9.50 4.37 -53.77 -0.23 -9.73 16 10 C 0.16 2.70 1.88 -67.89 -0.13 2.58 16 11 H 0.08 1.65 7.58 -51.92 -0.39 1.25 16 12 C -0.15 -2.83 5.65 -26.61 -0.15 -2.98 16 13 C 0.17 4.20 5.30 -3.71 -0.02 4.18 16 14 N -0.59 -14.68 2.99 -172.32 -0.52 -15.19 16 15 C -0.26 -6.92 9.58 -15.06 -0.14 -7.06 16 16 H 0.07 1.72 7.89 -52.48 -0.41 1.31 16 17 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 18 N -0.90 -26.22 11.20 55.49 0.62 -25.60 16 19 Si 0.90 21.49 29.59 -169.99 -5.03 16.46 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.15 3.17 5.80 -3.71 -0.02 3.15 16 24 C -0.11 -1.86 2.46 -90.51 -0.22 -2.08 16 25 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 26 C -0.14 -1.96 9.03 37.16 0.34 -1.62 16 27 C 0.52 7.57 7.40 -15.44 -0.11 7.46 16 28 O -0.55 -9.98 16.64 4.86 0.08 -9.90 16 29 C -0.25 -2.95 9.65 -39.38 -0.38 -3.33 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 32 H 0.07 0.31 8.10 -51.93 -0.42 -0.11 16 33 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.16 0.88 8.04 -52.48 -0.42 0.45 16 35 H 0.12 0.65 8.01 -51.93 -0.42 0.24 16 36 H 0.13 1.23 7.39 -51.93 -0.38 0.85 16 37 H 0.40 3.91 8.31 -40.82 -0.34 3.57 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.09 2.41 6.06 -51.93 -0.31 2.09 16 42 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 1.18 7.93 -51.92 -0.41 0.76 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.05 0.57 7.36 -51.93 -0.38 0.19 16 48 H 0.15 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 389.83 15.07 5.87 5.87 Total: -1.00 -36.45 389.83 -8.91 -45.35 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.68 Total: 2.56 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -1.86 Total: 5.98 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: -0.38 Total: -56.36 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: 0.17 Total: -19.87 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.45 -8.91 -45.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943253708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.094 kcal (2) G-P(sol) polarization free energy of solvation -36.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds