Wall clock time and date at job start Tue Mar 31 2020 18:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40205 * 120.36397 * 2 1 4 4 C 1.35340 * 119.94713 * 179.97438 * 3 2 1 5 5 N 1.35763 * 120.70416 * 359.97438 * 4 3 2 6 6 C 1.46499 * 119.62664 * 179.97438 * 5 4 3 7 7 C 1.50692 * 109.47252 * 270.02385 * 6 5 4 8 8 O 1.21284 * 120.00429 * 359.97438 * 7 6 5 9 9 N 1.34783 * 120.00080 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00301 * 179.97438 * 9 7 6 11 11 H 1.09008 * 109.46060 * 325.00589 * 10 9 7 12 12 C 1.53045 * 109.45826 * 84.97339 * 10 9 7 13 13 C 1.53189 * 109.31292 * 181.38779 * 12 10 9 14 14 N 1.46928 * 108.77540 * 305.36597 * 13 12 10 15 15 C 1.36932 * 120.63310 * 233.58423 * 14 13 12 16 16 H 1.08004 * 120.00266 * 151.82480 * 15 14 13 17 17 C 1.38817 * 120.00245 * 331.83378 * 15 14 13 18 18 N 1.31616 * 119.99632 * 343.08287 * 17 15 14 19 19 Si 1.86794 * 120.00401 * 163.08198 * 17 15 14 20 20 H 1.48504 * 109.47351 * 59.99892 * 19 17 15 21 21 H 1.48496 * 109.47324 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47091 * 300.00262 * 19 17 15 23 23 C 1.46928 * 118.73711 * 53.60847 * 14 13 12 24 24 C 1.53033 * 109.46330 * 205.03130 * 10 9 7 25 25 H 1.09004 * 109.49787 * 298.56796 * 24 10 9 26 26 C 1.52998 * 109.49957 * 58.65994 * 24 10 9 27 27 C 1.34663 * 120.74839 * 0.02562 * 5 4 3 28 28 O 1.22062 * 119.97953 * 179.72449 * 27 5 4 29 29 C 1.36390 * 120.37046 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47326 * 90.00164 * 1 2 3 31 31 H 1.08997 * 109.46867 * 210.00131 * 1 2 3 32 32 H 1.09004 * 109.47455 * 329.99929 * 1 2 3 33 33 H 1.08002 * 120.02223 * 359.97438 * 3 2 1 34 34 H 1.08004 * 119.64774 * 180.02562 * 4 3 2 35 35 H 1.09002 * 109.47033 * 30.02307 * 6 5 4 36 36 H 1.08998 * 109.47177 * 150.01985 * 6 5 4 37 37 H 0.97001 * 119.99971 * 0.02562 * 9 7 6 38 38 H 1.08996 * 109.49487 * 301.33756 * 12 10 9 39 39 H 1.08994 * 109.49437 * 61.43553 * 12 10 9 40 40 H 1.08998 * 109.58896 * 65.14876 * 13 12 10 41 41 H 1.08997 * 109.59253 * 185.57870 * 13 12 10 42 42 H 0.96998 * 120.00236 * 179.97438 * 18 17 15 43 43 H 1.08998 * 109.58677 * 66.18143 * 23 14 13 44 44 H 1.09008 * 109.58402 * 186.45755 * 23 14 13 45 45 H 1.09005 * 109.46895 * 60.00183 * 26 24 10 46 46 H 1.09003 * 109.47625 * 179.97438 * 26 24 10 47 47 H 1.08997 * 109.47269 * 300.00419 * 26 24 10 48 48 H 1.08002 * 120.34645 * 0.02646 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2097 0.0000 4 6 3.5691 1.1999 0.0005 5 7 4.2538 0.0276 0.0016 6 6 5.7187 0.0444 0.0016 7 6 6.2210 0.0496 -1.4192 8 8 5.4330 0.0396 -2.3411 9 7 7.5460 0.0652 -1.6655 10 6 8.0344 0.0696 -3.0466 11 1 7.3688 -0.5285 -3.6691 12 6 8.0679 1.5071 -3.5710 13 6 8.5459 1.5045 -5.0264 14 7 9.8362 0.8054 -5.0990 15 6 10.9232 1.4054 -5.6765 16 1 11.9199 1.1421 -5.3544 17 6 10.7443 2.3522 -6.6757 18 7 9.5892 2.4390 -7.3007 19 14 12.1426 3.5030 -7.1334 20 1 13.3070 2.7069 -7.5980 21 1 11.6998 4.4122 -8.2208 22 1 12.5331 4.3043 -5.9457 23 6 9.9378 -0.5499 -4.5409 24 6 9.4442 -0.5240 -3.0909 25 1 10.1157 0.0880 -2.4887 26 6 9.4158 -1.9494 -2.5358 27 6 3.6017 -1.1506 0.0016 28 8 4.2314 -2.1963 -0.0025 29 6 2.1966 -1.1767 0.0005 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 1.6820 2.1487 -0.0004 34 1 4.1102 2.1346 0.0009 35 1 6.0717 0.9388 0.5150 36 1 6.0923 -0.8410 0.5159 37 1 8.1763 0.0729 -0.9282 38 1 7.0678 1.9372 -3.5173 39 1 8.7524 2.0997 -2.9642 40 1 7.8155 0.9890 -5.6500 41 1 8.6663 2.5307 -5.3734 42 1 9.4639 3.1008 -7.9987 43 1 9.3209 -1.2328 -5.1249 44 1 10.9762 -0.8801 -4.5698 45 1 8.7452 -2.5611 -3.1394 46 1 10.4200 -2.3721 -2.5679 47 1 9.0617 -1.9310 -1.5051 48 1 1.6683 -2.1187 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943253708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:53 Heat of formation + Delta-G solvation = -44.677062 kcal Electronic energy + Delta-G solvation = -29066.148371 eV Core-core repulsion = 25120.901867 eV Total energy + Delta-G solvation = -3945.246504 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.52156 -40.94667 -39.19890 -38.09539 -36.38292 -36.08141 -34.27970 -32.96301 -32.04786 -31.14839 -30.35055 -28.12453 -27.45213 -26.49920 -24.65347 -23.98913 -22.71605 -22.58502 -21.63369 -20.93489 -18.92423 -18.52908 -18.49666 -18.38471 -17.13149 -17.00431 -16.71473 -16.33688 -16.21426 -15.63915 -15.48010 -15.18120 -15.10186 -14.95984 -14.63910 -14.61481 -14.25791 -14.16899 -13.72475 -13.54874 -13.33389 -13.11239 -13.03952 -12.96652 -12.84430 -12.76205 -12.58328 -12.45864 -12.35086 -12.10511 -12.06437 -11.71135 -11.60711 -11.38154 -11.18805 -11.07051 -10.57999 -10.55678 -10.05928 -8.98545 -8.73337 -7.88806 -5.36017 -0.11999 0.91931 1.47089 1.47823 1.49645 1.50533 1.57049 2.15731 2.50752 2.70140 3.26792 3.55147 3.63480 3.68175 3.72684 3.76704 3.88949 4.00430 4.10092 4.12629 4.17943 4.34157 4.35575 4.40933 4.57429 4.69006 4.70697 4.78883 4.81180 4.82658 4.86749 4.90612 4.99278 5.07074 5.09384 5.11426 5.24149 5.25672 5.35926 5.47578 5.49077 5.49852 5.61875 5.65988 5.67448 6.05653 6.36343 6.48523 6.96931 7.11306 7.18403 7.81518 8.35034 9.18196 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020298 B = 0.002543 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.140644 B =11009.208878 C =11826.198651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.032 3.968 3 C -0.232 4.232 4 C 0.139 3.861 5 N -0.483 5.483 6 C 0.074 3.926 7 C 0.495 3.505 8 O -0.580 6.580 9 N -0.700 5.700 10 C 0.170 3.830 11 H 0.045 0.955 12 C -0.127 4.127 13 C 0.182 3.818 14 N -0.608 5.608 15 C -0.263 4.263 16 H 0.074 0.926 17 C -0.054 4.054 18 N -0.939 5.939 19 Si 0.971 3.029 20 H -0.275 1.275 21 H -0.297 1.297 22 H -0.274 1.274 23 C 0.148 3.852 24 C -0.098 4.098 25 H 0.088 0.912 26 C -0.135 4.135 27 C 0.502 3.498 28 O -0.610 6.610 29 C -0.293 4.293 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.181 0.819 34 H 0.201 0.799 35 H 0.178 0.822 36 H 0.132 0.868 37 H 0.418 0.582 38 H 0.049 0.951 39 H 0.069 0.931 40 H -0.018 1.018 41 H 0.058 0.942 42 H 0.250 0.750 43 H 0.002 0.998 44 H 0.066 0.934 45 H 0.037 0.963 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.626 0.289 22.719 25.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.028 3.972 3 C -0.254 4.254 4 C 0.013 3.987 5 N -0.192 5.192 6 C -0.050 4.050 7 C 0.281 3.719 8 O -0.460 6.460 9 N -0.352 5.352 10 C 0.065 3.935 11 H 0.063 0.937 12 C -0.168 4.168 13 C 0.056 3.944 14 N -0.331 5.331 15 C -0.393 4.393 16 H 0.091 0.909 17 C -0.249 4.249 18 N -0.585 5.585 19 Si 0.799 3.201 20 H -0.200 1.200 21 H -0.224 1.224 22 H -0.199 1.199 23 C 0.022 3.978 24 C -0.118 4.118 25 H 0.106 0.894 26 C -0.193 4.193 27 C 0.308 3.692 28 O -0.498 6.498 29 C -0.314 4.314 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.117 0.883 33 H 0.199 0.801 34 H 0.218 0.782 35 H 0.195 0.805 36 H 0.150 0.850 37 H 0.256 0.744 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.000 1.000 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.020 0.980 44 H 0.085 0.915 45 H 0.056 0.944 46 H 0.090 0.910 47 H 0.091 0.909 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.774 -0.283 21.939 25.389 hybrid contribution 0.746 0.256 -0.989 1.265 sum -12.028 -0.027 20.950 24.158 Atomic orbital electron populations 1.21037 0.88001 1.04928 1.03953 1.20643 0.98535 0.92112 0.85902 1.21058 0.92496 0.99823 1.12036 1.22682 0.94457 0.89745 0.91790 1.45079 1.08023 1.07416 1.58699 1.22038 0.79013 1.10064 0.93915 1.21356 0.82864 0.75526 0.92148 1.90757 1.56502 1.51010 1.47704 1.45870 1.06465 1.73927 1.08957 1.20635 0.94986 0.95773 0.82095 0.93705 1.22287 0.99805 0.96552 0.98119 1.20477 0.85305 0.97130 0.91510 1.44347 1.08252 1.12723 1.67826 1.19532 0.87545 1.19149 1.13083 0.90855 1.25901 0.99383 1.03389 0.96215 1.70208 1.26269 1.36726 1.25327 0.85283 0.78865 0.78691 0.77252 1.20015 1.22373 1.19934 1.21084 0.99069 0.85870 0.91764 1.21749 0.94440 0.97691 0.97967 0.89360 1.21727 1.02327 0.94315 1.00948 1.17501 0.90303 0.82697 0.78708 1.90893 1.70208 1.32187 1.56550 1.21907 0.91661 1.00774 1.17068 0.89459 0.90368 0.88268 0.80142 0.78219 0.80491 0.84984 0.74386 0.93228 0.91205 0.99973 0.92326 0.94124 0.97964 0.91544 0.94421 0.90963 0.90905 0.84208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 10.03 71.24 0.71 -0.44 16 2 C 0.03 0.53 5.89 -19.82 -0.12 0.42 16 3 C -0.23 -3.00 9.71 22.08 0.21 -2.78 16 4 C 0.14 2.00 10.28 83.42 0.86 2.85 16 5 N -0.48 -10.48 2.07 -655.08 -1.36 -11.84 16 6 C 0.07 1.29 5.81 85.63 0.50 1.79 16 7 C 0.50 13.43 7.86 87.65 0.69 14.12 16 8 O -0.58 -22.46 16.09 -3.04 -0.05 -22.51 16 9 N -0.70 -17.05 4.37 -442.40 -1.93 -18.98 16 10 C 0.17 5.76 1.88 45.02 0.08 5.84 16 11 H 0.04 1.88 7.58 -2.38 -0.02 1.86 16 12 C -0.13 -4.94 5.65 30.67 0.17 -4.77 16 13 C 0.18 9.19 5.30 86.36 0.46 9.65 16 14 N -0.61 -30.75 2.99 -699.09 -2.09 -32.85 16 15 C -0.26 -14.34 9.58 84.04 0.81 -13.53 16 16 H 0.07 3.81 7.89 -2.91 -0.02 3.78 16 17 C -0.05 -3.01 4.92 84.86 0.42 -2.59 16 18 N -0.94 -56.71 11.20 21.65 0.24 -56.46 16 19 Si 0.97 44.51 29.59 68.60 2.03 46.54 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 C 0.15 6.13 5.80 86.36 0.50 6.63 16 24 C -0.10 -3.06 2.46 -10.72 -0.03 -3.09 16 25 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 26 C -0.14 -3.42 9.03 71.98 0.65 -2.77 16 27 C 0.50 14.92 7.40 84.82 0.63 15.55 16 28 O -0.61 -23.23 16.64 -5.52 -0.09 -23.32 16 29 C -0.29 -7.14 9.65 22.40 0.22 -6.92 16 30 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 0.68 8.09 -2.39 -0.02 0.66 16 32 H 0.10 0.46 8.10 -2.38 -0.02 0.45 16 33 H 0.18 1.01 8.06 -2.91 -0.02 0.98 16 34 H 0.20 1.17 8.04 -2.91 -0.02 1.15 16 35 H 0.18 0.98 8.01 -2.39 -0.02 0.96 16 36 H 0.13 2.27 7.39 -2.39 -0.02 2.26 16 37 H 0.42 6.61 8.31 -92.71 -0.77 5.84 16 38 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 40 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 41 H 0.06 3.30 6.06 -2.39 -0.01 3.28 16 42 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 43 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 44 H 0.07 2.61 7.93 -2.38 -0.02 2.59 16 45 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 46 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.07 1.49 7.36 -2.39 -0.02 1.48 16 48 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -87.09 389.83 3.70 -83.39 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.19 Total: 16.07 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: 6.76 Total: 19.96 kcal Atomic # 7 Polarization: -114.99 SS G_CDS: -5.14 Total: -120.13 kcal Atomic # 8 Polarization: -45.69 SS G_CDS: -0.14 Total: -45.83 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -87.09 3.70 -83.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943253708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.715 kcal (2) G-P(sol) polarization free energy of solvation -87.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds