Wall clock time and date at job start Tue Mar 31 2020 17:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37995 * 120.82446 * 2 1 4 4 C 1.39124 * 119.26267 * 180.27325 * 3 2 1 5 5 O 1.35500 * 119.52000 * 179.69562 * 4 3 2 6 6 N 1.32431 * 120.95279 * 359.71778 * 4 3 2 7 7 C 1.31636 * 121.79727 * 0.02562 * 6 4 3 8 8 C 1.50704 * 119.68524 * 179.97438 * 7 6 4 9 9 C 1.39558 * 120.62960 * 0.02562 * 7 6 4 10 10 C 1.47618 * 120.50039 * 180.02562 * 9 7 6 11 11 O 1.21583 * 119.99824 * 90.00293 * 10 9 7 12 12 N 1.34775 * 120.00013 * 269.99453 * 10 9 7 13 13 C 1.46498 * 120.00071 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.46016 * 325.03142 * 13 12 10 15 15 C 1.53036 * 109.46333 * 85.00260 * 13 12 10 16 16 C 1.53187 * 109.31796 * 181.38587 * 15 13 12 17 17 N 1.46929 * 108.77314 * 305.36619 * 16 15 13 18 18 C 1.36938 * 120.63096 * 233.58114 * 17 16 15 19 19 H 1.07996 * 120.00040 * 152.45657 * 18 17 16 20 20 C 1.38815 * 119.99900 * 332.46589 * 18 17 16 21 21 N 1.31625 * 120.00044 * 342.37252 * 20 18 17 22 22 Si 1.86799 * 119.99992 * 162.65255 * 20 18 17 23 23 H 1.48494 * 109.47281 * 59.99509 * 22 20 18 24 24 H 1.48501 * 109.47279 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46851 * 299.99688 * 22 20 18 26 26 C 1.46920 * 118.73799 * 53.86216 * 17 16 15 27 27 C 1.53041 * 109.46342 * 205.07177 * 13 12 10 28 28 H 1.09004 * 109.49307 * 298.60370 * 27 13 12 29 29 C 1.53004 * 109.49597 * 58.66018 * 27 13 12 30 30 H 1.08999 * 109.47079 * 270.28088 * 1 2 3 31 31 H 1.08997 * 109.46902 * 30.27884 * 1 2 3 32 32 H 1.08993 * 109.47666 * 150.27627 * 1 2 3 33 33 H 1.08005 * 120.36526 * 359.96738 * 3 2 1 34 34 H 0.96701 * 114.00162 * 270.01462 * 5 4 3 35 35 H 1.08997 * 109.47000 * 270.02159 * 8 7 6 36 36 H 1.08997 * 109.47308 * 30.02566 * 8 7 6 37 37 H 1.09003 * 109.47167 * 150.02090 * 8 7 6 38 38 H 0.97001 * 120.00169 * 0.02562 * 12 10 9 39 39 H 1.09004 * 109.49681 * 61.42944 * 15 13 12 40 40 H 1.09007 * 109.52459 * 301.35841 * 15 13 12 41 41 H 1.08998 * 109.58921 * 185.57581 * 16 15 13 42 42 H 1.08999 * 109.70471 * 65.22142 * 16 15 13 43 43 H 0.96995 * 119.99676 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.59297 * 65.92481 * 26 17 16 45 45 H 1.09004 * 109.58520 * 186.35376 * 26 17 16 46 46 H 1.09002 * 109.47122 * 60.00181 * 29 27 13 47 47 H 1.08999 * 109.47382 * 180.02562 * 29 27 13 48 48 H 1.09003 * 109.47321 * 300.00071 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6048 1.1471 -0.0058 5 8 4.3043 2.3076 -0.0121 6 7 4.2548 -0.0067 -0.0057 7 6 3.6204 -1.1601 -0.0006 8 6 4.4079 -2.4451 -0.0013 9 6 2.2255 -1.2044 0.0043 10 6 1.5170 -2.4995 0.0105 11 8 1.2289 -3.0296 1.0660 12 7 1.1895 -3.0940 -1.1538 13 6 0.4859 -4.3789 -1.1477 14 1 0.8309 -4.9778 -0.3049 15 6 -1.0193 -4.1355 -1.0177 16 6 -1.7488 -5.4819 -0.9768 17 7 -1.3640 -6.2643 -2.1594 18 6 -2.3181 -6.7818 -2.9943 19 1 -2.0895 -6.9514 -4.0361 20 6 -3.5792 -7.0882 -2.5016 21 7 -3.7658 -7.2172 -1.2051 22 14 -5.0098 -7.3251 -3.6792 23 1 -4.7062 -8.4430 -4.6084 24 1 -6.2384 -7.6429 -2.9080 25 1 -5.2219 -6.0783 -4.4575 26 6 0.0637 -6.4862 -2.4256 27 6 0.7730 -5.1238 -2.4534 28 1 0.4064 -4.5365 -3.2954 29 6 2.2810 -5.3378 -2.5983 30 1 -0.3633 0.0050 1.0276 31 1 -0.3633 0.8875 -0.5181 32 1 -0.3634 -0.8924 -0.5095 33 1 1.6936 2.1314 -0.0005 34 1 4.5035 2.6420 -0.8973 35 1 4.5937 -2.7567 -1.0291 36 1 5.3585 -2.2889 0.5085 37 1 3.8410 -3.2190 0.5162 38 1 1.4197 -2.6711 -1.9959 39 1 -1.3696 -3.5577 -1.8731 40 1 -1.2213 -3.5842 -0.0992 41 1 -2.8258 -5.3144 -0.9840 42 1 -1.4695 -6.0239 -0.0733 43 1 -4.6469 -7.4317 -0.8609 44 1 0.4902 -7.1073 -1.6379 45 1 0.1830 -6.9815 -3.3893 46 1 2.6470 -5.9260 -1.7567 47 1 2.4851 -5.8679 -3.5286 48 1 2.7855 -4.3716 -2.6129 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000945062652.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:28 Heat of formation + Delta-G solvation = -31.926319 kcal Electronic energy + Delta-G solvation = -29546.371838 eV Core-core repulsion = 25601.678248 eV Total energy + Delta-G solvation = -3944.693590 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.18697 -39.62434 -37.90729 -37.19421 -34.59849 -34.56205 -32.77576 -31.99182 -31.19060 -29.86176 -28.33601 -27.97397 -25.93543 -25.21803 -23.81806 -22.18693 -21.60467 -21.04117 -20.49926 -19.50414 -18.72595 -17.64733 -17.45499 -16.68727 -16.23905 -15.87942 -14.97223 -14.68941 -14.44246 -14.35878 -14.00060 -13.90013 -13.59506 -13.58721 -13.51071 -13.28478 -13.00249 -12.82441 -12.70333 -12.55329 -12.36686 -12.17684 -12.10524 -11.91261 -11.52118 -11.34287 -11.10672 -10.84623 -10.68610 -10.41247 -10.28295 -10.21362 -10.03603 -9.83973 -9.82037 -9.71142 -9.46468 -9.08351 -8.77462 -8.45321 -6.72211 -5.81379 -3.24111 0.48329 0.83239 2.57014 2.95490 3.31090 3.33619 3.36725 3.42647 3.43212 4.14712 4.24072 4.46677 4.58271 4.72750 4.90229 5.03017 5.10101 5.18585 5.26973 5.27933 5.31775 5.34911 5.37062 5.46308 5.56063 5.62299 5.67395 5.83034 5.85329 5.88983 5.93669 6.06199 6.12987 6.20373 6.22934 6.29943 6.39903 6.55529 6.62584 6.73116 6.85604 6.92184 7.09499 7.32874 7.54089 7.59035 7.65224 7.76640 8.24602 8.41734 9.17824 9.81251 10.37530 11.27013 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020828 B = 0.002822 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.998885 B = 9919.750801 C =10563.232783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.013 3.987 3 C -0.197 4.197 4 C 0.328 3.672 5 O -0.481 6.481 6 N -0.508 5.508 7 C 0.193 3.807 8 C -0.113 4.113 9 C -0.189 4.189 10 C 0.569 3.431 11 O -0.526 6.526 12 N -0.712 5.712 13 C 0.156 3.844 14 H 0.084 0.916 15 C -0.147 4.147 16 C 0.173 3.827 17 N -0.592 5.592 18 C -0.256 4.256 19 H 0.066 0.934 20 C 0.003 3.997 21 N -0.901 5.901 22 Si 0.902 3.098 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.155 3.845 27 C -0.114 4.114 28 H 0.071 0.929 29 C -0.143 4.143 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.146 0.854 34 H 0.402 0.598 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.396 0.604 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.090 0.910 42 H 0.021 0.979 43 H 0.255 0.745 44 H 0.021 0.979 45 H 0.058 0.942 46 H 0.053 0.947 47 H 0.054 0.946 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.060 16.148 -1.459 21.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.005 3.995 3 C -0.218 4.218 4 C 0.150 3.850 5 O -0.289 6.289 6 N -0.228 5.228 7 C 0.055 3.945 8 C -0.170 4.170 9 C -0.194 4.194 10 C 0.352 3.648 11 O -0.402 6.402 12 N -0.362 5.362 13 C 0.053 3.947 14 H 0.102 0.898 15 C -0.187 4.187 16 C 0.047 3.953 17 N -0.314 5.314 18 C -0.385 4.385 19 H 0.083 0.917 20 C -0.195 4.195 21 N -0.545 5.545 22 Si 0.732 3.268 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.028 3.972 27 C -0.135 4.135 28 H 0.090 0.910 29 C -0.201 4.201 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.163 0.837 34 H 0.260 0.740 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.229 0.771 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.108 0.892 42 H 0.039 0.961 43 H 0.065 0.935 44 H 0.039 0.961 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.073 0.927 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.537 15.697 -0.010 21.394 hybrid contribution -1.437 0.419 -1.372 2.030 sum 13.100 16.116 -1.381 20.815 Atomic orbital electron populations 1.20969 0.89101 1.04138 1.04036 1.20249 0.97086 0.90833 0.91308 1.21874 0.93694 0.99376 1.06839 1.19233 0.87020 0.85016 0.93738 1.84734 1.76047 1.34111 1.33959 1.66981 1.41858 0.97833 1.16110 1.21042 0.89189 0.93122 0.91165 1.20881 1.00583 0.91748 1.03815 1.20828 0.94864 0.94716 1.09001 1.17827 0.78569 0.83744 0.84612 1.90850 1.53936 1.64508 1.30881 1.46368 1.58629 1.23553 1.07631 1.21135 0.92446 0.82268 0.98870 0.89804 1.22580 0.94024 1.01671 1.00467 1.20755 0.99672 0.86441 0.88422 1.44110 0.99683 1.59071 1.28567 1.19124 0.91827 1.37154 0.90421 0.91670 1.25044 0.99279 0.99517 0.95704 1.70030 1.22202 1.51008 1.11236 0.86380 0.82087 0.78077 0.80265 1.20883 1.21634 1.21058 1.20978 0.85726 0.91582 0.98948 1.22054 0.95114 0.99984 0.96388 0.91038 1.21784 0.95842 1.00807 1.01628 0.89437 0.90224 0.90205 0.83653 0.73989 0.89525 0.89682 0.89855 0.77063 0.92607 0.92803 0.89215 0.96114 0.93499 0.96107 0.92356 0.92790 0.92701 0.93510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 9.69 36.01 0.35 -0.86 16 2 C 0.01 0.14 5.95 -103.96 -0.62 -0.48 16 3 C -0.20 -1.87 9.73 -39.34 -0.38 -2.25 16 4 C 0.33 3.50 7.74 -16.96 -0.13 3.37 16 5 O -0.48 -4.15 13.55 -18.19 -0.25 -4.40 16 6 N -0.51 -6.23 10.28 -9.20 -0.09 -6.32 16 7 C 0.19 2.33 6.82 -82.18 -0.56 1.77 16 8 C -0.11 -1.15 9.78 36.01 0.35 -0.80 16 9 C -0.19 -2.35 5.65 -104.82 -0.59 -2.94 16 10 C 0.57 8.15 4.29 -12.43 -0.05 8.09 16 11 O -0.53 -9.71 16.76 5.29 0.09 -9.62 16 12 N -0.71 -9.28 4.36 -54.78 -0.24 -9.52 16 13 C 0.16 2.51 1.88 -67.89 -0.13 2.39 16 14 H 0.08 1.54 7.57 -51.93 -0.39 1.15 16 15 C -0.15 -2.76 5.65 -26.62 -0.15 -2.91 16 16 C 0.17 4.07 5.31 -3.71 -0.02 4.05 16 17 N -0.59 -14.26 2.99 -172.06 -0.51 -14.77 16 18 C -0.26 -6.80 9.59 -15.06 -0.14 -6.94 16 19 H 0.07 1.69 7.89 -52.49 -0.41 1.28 16 20 C 0.00 0.09 4.90 -17.43 -0.09 0.01 16 21 N -0.90 -25.82 11.19 55.49 0.62 -25.20 16 22 Si 0.90 21.26 29.59 -169.99 -5.03 16.23 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C 0.15 3.04 5.83 -3.49 -0.02 3.02 16 27 C -0.11 -1.77 2.47 -90.27 -0.22 -1.99 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 29 C -0.14 -1.74 9.03 37.16 0.34 -1.41 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 32 H 0.08 0.87 7.18 -51.93 -0.37 0.50 16 33 H 0.15 1.01 8.06 -52.48 -0.42 0.59 16 34 H 0.40 1.32 9.06 45.56 0.41 1.74 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.95 7.06 -51.93 -0.37 0.58 16 38 H 0.40 4.24 8.30 -40.82 -0.34 3.90 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 41 H 0.09 2.37 6.03 -51.93 -0.31 2.05 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 46 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.05 0.49 7.36 -51.93 -0.38 0.10 16 LS Contribution 388.62 15.07 5.86 5.86 Total: -1.00 -33.05 388.62 -8.42 -41.47 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.79 Total: 4.16 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -2.07 Total: 2.12 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -0.23 Total: -55.81 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.16 Total: -14.02 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.05 -8.42 -41.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000945062652.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.543 kcal (2) G-P(sol) polarization free energy of solvation -33.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds