Wall clock time and date at job start Tue Mar 31 2020 17:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37995 * 120.82446 * 2 1 4 4 C 1.39124 * 119.26267 * 180.27325 * 3 2 1 5 5 O 1.35500 * 119.52000 * 179.69562 * 4 3 2 6 6 N 1.32431 * 120.95279 * 359.71778 * 4 3 2 7 7 C 1.31636 * 121.79727 * 0.02562 * 6 4 3 8 8 C 1.50704 * 119.68524 * 179.97438 * 7 6 4 9 9 C 1.39558 * 120.62960 * 0.02562 * 7 6 4 10 10 C 1.47618 * 120.50039 * 180.02562 * 9 7 6 11 11 O 1.21583 * 119.99824 * 90.00293 * 10 9 7 12 12 N 1.34775 * 120.00013 * 269.99453 * 10 9 7 13 13 C 1.46498 * 120.00071 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.46016 * 325.03142 * 13 12 10 15 15 C 1.53036 * 109.46333 * 85.00260 * 13 12 10 16 16 C 1.53187 * 109.31796 * 181.38587 * 15 13 12 17 17 N 1.46929 * 108.77314 * 305.36619 * 16 15 13 18 18 C 1.36938 * 120.63096 * 233.58114 * 17 16 15 19 19 H 1.07996 * 120.00040 * 152.45657 * 18 17 16 20 20 C 1.38815 * 119.99900 * 332.46589 * 18 17 16 21 21 N 1.31625 * 120.00044 * 342.37252 * 20 18 17 22 22 Si 1.86799 * 119.99992 * 162.65255 * 20 18 17 23 23 H 1.48494 * 109.47281 * 59.99509 * 22 20 18 24 24 H 1.48501 * 109.47279 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46851 * 299.99688 * 22 20 18 26 26 C 1.46920 * 118.73799 * 53.86216 * 17 16 15 27 27 C 1.53041 * 109.46342 * 205.07177 * 13 12 10 28 28 H 1.09004 * 109.49307 * 298.60370 * 27 13 12 29 29 C 1.53004 * 109.49597 * 58.66018 * 27 13 12 30 30 H 1.08999 * 109.47079 * 270.28088 * 1 2 3 31 31 H 1.08997 * 109.46902 * 30.27884 * 1 2 3 32 32 H 1.08993 * 109.47666 * 150.27627 * 1 2 3 33 33 H 1.08005 * 120.36526 * 359.96738 * 3 2 1 34 34 H 0.96701 * 114.00162 * 270.01462 * 5 4 3 35 35 H 1.08997 * 109.47000 * 270.02159 * 8 7 6 36 36 H 1.08997 * 109.47308 * 30.02566 * 8 7 6 37 37 H 1.09003 * 109.47167 * 150.02090 * 8 7 6 38 38 H 0.97001 * 120.00169 * 0.02562 * 12 10 9 39 39 H 1.09004 * 109.49681 * 61.42944 * 15 13 12 40 40 H 1.09007 * 109.52459 * 301.35841 * 15 13 12 41 41 H 1.08998 * 109.58921 * 185.57581 * 16 15 13 42 42 H 1.08999 * 109.70471 * 65.22142 * 16 15 13 43 43 H 0.96995 * 119.99676 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.59297 * 65.92481 * 26 17 16 45 45 H 1.09004 * 109.58520 * 186.35376 * 26 17 16 46 46 H 1.09002 * 109.47122 * 60.00181 * 29 27 13 47 47 H 1.08999 * 109.47382 * 180.02562 * 29 27 13 48 48 H 1.09003 * 109.47321 * 300.00071 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6048 1.1471 -0.0058 5 8 4.3043 2.3076 -0.0121 6 7 4.2548 -0.0067 -0.0057 7 6 3.6204 -1.1601 -0.0006 8 6 4.4079 -2.4451 -0.0013 9 6 2.2255 -1.2044 0.0043 10 6 1.5170 -2.4995 0.0105 11 8 1.2289 -3.0296 1.0660 12 7 1.1895 -3.0940 -1.1538 13 6 0.4859 -4.3789 -1.1477 14 1 0.8309 -4.9778 -0.3049 15 6 -1.0193 -4.1355 -1.0177 16 6 -1.7488 -5.4819 -0.9768 17 7 -1.3640 -6.2643 -2.1594 18 6 -2.3181 -6.7818 -2.9943 19 1 -2.0895 -6.9514 -4.0361 20 6 -3.5792 -7.0882 -2.5016 21 7 -3.7658 -7.2172 -1.2051 22 14 -5.0098 -7.3251 -3.6792 23 1 -4.7062 -8.4430 -4.6084 24 1 -6.2384 -7.6429 -2.9080 25 1 -5.2219 -6.0783 -4.4575 26 6 0.0637 -6.4862 -2.4256 27 6 0.7730 -5.1238 -2.4534 28 1 0.4064 -4.5365 -3.2954 29 6 2.2810 -5.3378 -2.5983 30 1 -0.3633 0.0050 1.0276 31 1 -0.3633 0.8875 -0.5181 32 1 -0.3634 -0.8924 -0.5095 33 1 1.6936 2.1314 -0.0005 34 1 4.5035 2.6420 -0.8973 35 1 4.5937 -2.7567 -1.0291 36 1 5.3585 -2.2889 0.5085 37 1 3.8410 -3.2190 0.5162 38 1 1.4197 -2.6711 -1.9959 39 1 -1.3696 -3.5577 -1.8731 40 1 -1.2213 -3.5842 -0.0992 41 1 -2.8258 -5.3144 -0.9840 42 1 -1.4695 -6.0239 -0.0733 43 1 -4.6469 -7.4317 -0.8609 44 1 0.4902 -7.1073 -1.6379 45 1 0.1830 -6.9815 -3.3893 46 1 2.6470 -5.9260 -1.7567 47 1 2.4851 -5.8679 -3.5286 48 1 2.7855 -4.3716 -2.6129 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000945062652.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:27 Heat of formation + Delta-G solvation = -56.992300 kcal Electronic energy + Delta-G solvation = -29547.458781 eV Core-core repulsion = 25601.678248 eV Total energy + Delta-G solvation = -3945.780533 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.09835 -40.77433 -39.21676 -38.11025 -36.19569 -35.39409 -34.21716 -32.99595 -32.84403 -31.46782 -29.10345 -28.87703 -27.39446 -26.85953 -24.93848 -23.63873 -22.63691 -22.40170 -21.68045 -20.97122 -19.46793 -18.92438 -18.45251 -18.27876 -17.45125 -16.83122 -16.67352 -15.92273 -15.68944 -15.57319 -15.23785 -15.21109 -14.81955 -14.71925 -14.51844 -14.33607 -14.26114 -14.17889 -13.85010 -13.56215 -13.36720 -13.13459 -13.04752 -12.98575 -12.92624 -12.70609 -12.62966 -12.56100 -12.32217 -12.07842 -12.03913 -11.66842 -11.57323 -11.38729 -11.10125 -10.64800 -10.55267 -10.54094 -10.04522 -9.90321 -8.70639 -7.86720 -5.32475 -0.33684 0.03027 1.43327 1.48472 1.50489 1.57473 2.01297 2.37050 2.52341 2.56134 3.28585 3.37882 3.43166 3.57704 3.68848 3.78488 3.95085 4.06089 4.17184 4.18110 4.26837 4.39419 4.40783 4.52420 4.58538 4.61040 4.62962 4.73668 4.73875 4.82613 4.87673 4.92049 4.95559 5.02615 5.08961 5.10931 5.12823 5.15845 5.31481 5.39825 5.40990 5.50542 5.53806 5.64646 5.71537 6.38685 6.47096 6.55417 6.79235 7.13717 7.14025 7.85221 8.37561 9.19877 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020828 B = 0.002822 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.998885 B = 9919.750801 C =10563.232783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.011 3.989 3 C -0.188 4.188 4 C 0.329 3.671 5 O -0.486 6.486 6 N -0.528 5.528 7 C 0.189 3.811 8 C -0.111 4.111 9 C -0.207 4.207 10 C 0.579 3.421 11 O -0.572 6.572 12 N -0.695 5.695 13 C 0.169 3.831 14 H 0.060 0.940 15 C -0.131 4.131 16 C 0.183 3.817 17 N -0.609 5.609 18 C -0.262 4.262 19 H 0.073 0.927 20 C -0.053 4.053 21 N -0.938 5.938 22 Si 0.968 3.032 23 H -0.274 1.274 24 H -0.298 1.298 25 H -0.276 1.276 26 C 0.149 3.851 27 C -0.099 4.099 28 H 0.080 0.920 29 C -0.135 4.135 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.176 0.824 34 H 0.425 0.575 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.412 0.588 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.056 0.944 42 H -0.012 1.012 43 H 0.249 0.751 44 H 0.010 0.990 45 H 0.064 0.936 46 H 0.048 0.952 47 H 0.069 0.931 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.592 18.545 -3.579 24.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.003 3.997 3 C -0.209 4.209 4 C 0.151 3.849 5 O -0.297 6.297 6 N -0.248 5.248 7 C 0.050 3.950 8 C -0.168 4.168 9 C -0.213 4.213 10 C 0.364 3.636 11 O -0.451 6.451 12 N -0.345 5.345 13 C 0.065 3.935 14 H 0.078 0.922 15 C -0.171 4.171 16 C 0.056 3.944 17 N -0.332 5.332 18 C -0.392 4.392 19 H 0.090 0.910 20 C -0.248 4.248 21 N -0.584 5.584 22 Si 0.796 3.204 23 H -0.200 1.200 24 H -0.224 1.224 25 H -0.202 1.202 26 C 0.023 3.977 27 C -0.120 4.120 28 H 0.099 0.901 29 C -0.193 4.193 30 H 0.101 0.899 31 H 0.128 0.872 32 H 0.081 0.919 33 H 0.193 0.807 34 H 0.288 0.712 35 H 0.125 0.875 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.249 0.751 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.006 0.994 43 H 0.058 0.942 44 H 0.028 0.972 45 H 0.083 0.917 46 H 0.067 0.933 47 H 0.088 0.912 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 16.124 18.135 -2.199 24.366 hybrid contribution -1.834 -0.264 -0.689 1.977 sum 14.290 17.870 -2.887 23.063 Atomic orbital electron populations 1.21001 0.88428 1.04784 1.03945 1.20433 0.97633 0.90761 0.90860 1.22101 0.93277 0.99988 1.05525 1.19477 0.87658 0.85132 0.92632 1.84688 1.75807 1.33142 1.36112 1.67023 1.42345 0.98327 1.17150 1.21202 0.89084 0.93712 0.90981 1.20898 1.00300 0.90697 1.04937 1.20663 0.95146 0.93966 1.11479 1.18072 0.77609 0.84022 0.83848 1.90832 1.55839 1.65874 1.32584 1.46036 1.57762 1.22310 1.08361 1.20735 0.90689 0.83499 0.98617 0.92200 1.22317 0.95637 0.98628 1.00524 1.20466 0.98215 0.88435 0.87271 1.44359 1.01306 1.59340 1.28174 1.19515 0.92533 1.36021 0.91093 0.90955 1.25832 1.01806 1.00092 0.97061 1.70205 1.22188 1.52848 1.13127 0.85340 0.78572 0.78314 0.78216 1.20009 1.22442 1.20163 1.21170 0.83609 0.94159 0.98713 1.21841 0.97142 0.97138 0.95874 0.90149 1.21735 0.92922 1.02446 1.02218 0.89908 0.87241 0.91858 0.80695 0.71237 0.87501 0.89130 0.91467 0.75072 0.91795 0.93288 0.92575 0.99403 0.94184 0.97182 0.91717 0.93266 0.91221 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 9.69 71.24 0.69 -1.48 16 2 C 0.01 0.22 5.95 -19.43 -0.12 0.10 16 3 C -0.19 -3.00 9.73 22.43 0.22 -2.78 16 4 C 0.33 6.13 7.74 84.82 0.66 6.79 16 5 O -0.49 -6.90 13.55 -88.01 -1.19 -8.10 16 6 N -0.53 -11.87 10.28 -295.90 -3.04 -14.91 16 7 C 0.19 4.25 6.82 42.91 0.29 4.54 16 8 C -0.11 -2.12 9.78 71.24 0.70 -1.42 16 9 C -0.21 -4.88 5.65 -19.99 -0.11 -5.00 16 10 C 0.58 16.32 4.29 86.72 0.37 16.70 16 11 O -0.57 -21.63 16.76 -3.98 -0.07 -21.70 16 12 N -0.69 -17.21 4.36 -445.50 -1.94 -19.16 16 13 C 0.17 5.41 1.88 45.02 0.08 5.50 16 14 H 0.06 2.26 7.57 -2.39 -0.02 2.24 16 15 C -0.13 -5.01 5.65 30.67 0.17 -4.84 16 16 C 0.18 8.99 5.31 86.36 0.46 9.45 16 17 N -0.61 -29.94 2.99 -698.28 -2.09 -32.02 16 18 C -0.26 -14.05 9.59 84.03 0.81 -13.24 16 19 H 0.07 3.71 7.89 -2.91 -0.02 3.69 16 20 C -0.05 -2.92 4.90 84.86 0.42 -2.51 16 21 N -0.94 -55.96 11.19 21.65 0.24 -55.72 16 22 Si 0.97 44.27 29.59 68.60 2.03 46.30 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 25 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 26 C 0.15 5.85 5.83 86.51 0.50 6.36 16 27 C -0.10 -2.92 2.47 -10.57 -0.03 -2.94 16 28 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 29 C -0.14 -2.93 9.03 71.98 0.65 -2.29 16 30 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.11 1.20 8.10 -2.39 -0.02 1.18 16 32 H 0.06 1.31 7.18 -2.39 -0.02 1.29 16 33 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16 34 H 0.43 1.37 9.06 -74.06 -0.67 0.70 16 35 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.07 1.50 7.06 -2.39 -0.02 1.48 16 38 H 0.41 7.74 8.30 -92.71 -0.77 6.97 16 39 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 40 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 41 H 0.06 3.13 6.03 -2.39 -0.01 3.11 16 42 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 43 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 44 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.06 2.43 7.93 -2.39 -0.02 2.41 16 46 H 0.05 1.13 8.14 -2.39 -0.02 1.12 16 47 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.07 1.23 7.36 -2.39 -0.02 1.21 16 Total: -1.00 -74.67 388.62 -0.75 -75.42 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -0.45 Total: 16.94 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 5.76 Total: 12.95 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -6.83 Total: -121.81 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -1.26 Total: -29.80 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -74.67 -0.75 -75.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000945062652.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.431 kcal (2) G-P(sol) polarization free energy of solvation -74.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds