Wall clock time and date at job start Tue Mar 31 2020 17:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38000 * 120.82431 * 2 1 4 4 C 1.39124 * 119.26634 * 180.02562 * 3 2 1 5 5 O 1.35497 * 119.52792 * 180.02562 * 4 3 2 6 6 N 1.32437 * 120.94774 * 359.97438 * 4 3 2 7 7 C 1.31641 * 121.80408 * 359.74574 * 6 4 3 8 8 C 1.50698 * 119.68973 * 180.28919 * 7 6 4 9 9 C 1.39564 * 120.61841 * 0.54246 * 7 6 4 10 10 C 1.47622 * 120.49756 * 179.72018 * 9 7 6 11 11 O 1.21588 * 120.00086 * 269.72726 * 10 9 7 12 12 N 1.34772 * 119.99778 * 89.71942 * 10 9 7 13 13 C 1.46498 * 120.00010 * 180.02562 * 12 10 9 14 14 H 1.09005 * 109.46148 * 35.02907 * 13 12 10 15 15 C 1.53041 * 109.45032 * 275.06777 * 13 12 10 16 16 C 1.53192 * 109.31488 * 178.62247 * 15 13 12 17 17 N 1.46918 * 108.77794 * 54.63156 * 16 15 13 18 18 C 1.36935 * 120.63320 * 126.37121 * 17 16 15 19 19 H 1.07997 * 120.00589 * 207.70139 * 18 17 16 20 20 C 1.38811 * 119.99982 * 27.69830 * 18 17 16 21 21 N 1.31628 * 120.00128 * 17.35388 * 20 18 17 22 22 Si 1.86800 * 120.00378 * 197.35272 * 20 18 17 23 23 H 1.48500 * 109.47088 * 59.99836 * 22 20 18 24 24 H 1.48499 * 109.47288 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47093 * 299.99945 * 22 20 18 26 26 C 1.46934 * 118.73973 * 306.39664 * 17 16 15 27 27 C 1.53034 * 109.46370 * 155.00479 * 13 12 10 28 28 H 1.09005 * 109.49818 * 61.41834 * 27 13 12 29 29 C 1.53004 * 109.52328 * 301.34236 * 27 13 12 30 30 H 1.08997 * 109.46775 * 269.97998 * 1 2 3 31 31 H 1.09004 * 109.46599 * 29.97545 * 1 2 3 32 32 H 1.08994 * 109.47276 * 149.97153 * 1 2 3 33 33 H 1.07995 * 120.36616 * 0.02562 * 3 2 1 34 34 H 0.96696 * 114.00208 * 89.99776 * 5 4 3 35 35 H 1.09005 * 109.46942 * 270.24804 * 8 7 6 36 36 H 1.08992 * 109.47376 * 30.24791 * 8 7 6 37 37 H 1.08998 * 109.47071 * 150.25387 * 8 7 6 38 38 H 0.97004 * 120.00162 * 0.02562 * 12 10 9 39 39 H 1.09003 * 109.50009 * 298.57111 * 15 13 12 40 40 H 1.08995 * 109.49865 * 58.66442 * 15 13 12 41 41 H 1.09005 * 109.58745 * 174.42376 * 16 15 13 42 42 H 1.09004 * 109.58202 * 294.84307 * 16 15 13 43 43 H 0.96995 * 120.00288 * 179.97438 * 21 20 18 44 44 H 1.09004 * 109.58025 * 293.82140 * 26 17 16 45 45 H 1.08996 * 109.58385 * 173.39814 * 26 17 16 46 46 H 1.08997 * 109.46928 * 300.14275 * 29 27 13 47 47 H 1.08993 * 109.47272 * 60.14379 * 29 27 13 48 48 H 1.09003 * 109.46822 * 180.14324 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6048 1.1472 -0.0005 5 8 4.3044 2.3076 0.0000 6 7 4.2548 -0.0067 -0.0005 7 6 3.6205 -1.1602 0.0049 8 6 4.4080 -2.4450 0.0112 9 6 2.2256 -1.2044 -0.0004 10 6 1.5170 -2.4994 -0.0005 11 8 1.2249 -3.0326 -1.0535 12 7 1.1941 -3.0909 1.1667 13 6 0.4914 -4.3764 1.1667 14 1 0.8347 -4.9779 0.3249 15 6 -1.0143 -4.1341 1.0396 16 6 -1.7432 -5.4811 1.0053 17 7 -1.3550 -6.2591 2.1896 18 6 -2.3067 -6.7734 3.0292 19 1 -2.0759 -6.9368 4.0715 20 6 -3.5682 -7.0846 2.5407 21 7 -3.7582 -7.2160 1.2449 22 14 -4.9962 -7.3170 3.7223 23 1 -5.2089 -6.0662 4.4939 24 1 -6.2257 -7.6412 2.9552 25 1 -4.6892 -8.4292 4.6572 26 6 0.0738 -6.4745 2.4563 27 6 0.7821 -5.1164 2.4743 28 1 0.4168 -4.5267 3.3151 29 6 2.2906 -5.3291 2.6170 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8903 -0.5135 32 1 -0.3633 -0.8897 -0.5142 33 1 1.6937 2.1313 0.0004 34 1 4.5078 2.6439 0.8835 35 1 4.6018 -2.7574 -1.0149 36 1 5.3546 -2.2884 0.5283 37 1 3.8370 -3.2186 0.5248 38 1 1.4269 -2.6654 2.0068 39 1 -1.3628 -3.5536 1.8939 40 1 -1.2183 -3.5864 0.1196 41 1 -2.8203 -5.3141 1.0147 42 1 -1.4635 -6.0249 0.1030 43 1 -4.6396 -7.4339 0.9036 44 1 0.5016 -7.0994 1.6722 45 1 0.1954 -6.9631 3.4230 46 1 2.6557 -5.9179 1.7754 47 1 2.7942 -4.3626 2.6298 48 1 2.4964 -5.8585 3.5473 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000945062653.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:32 Heat of formation + Delta-G solvation = -31.931292 kcal Electronic energy + Delta-G solvation = -29548.176427 eV Core-core repulsion = 25603.482621 eV Total energy + Delta-G solvation = -3944.693806 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.18710 -39.62836 -37.91624 -37.19984 -34.58799 -34.56746 -32.79478 -32.00102 -31.19055 -29.85595 -28.33377 -27.97736 -25.94861 -25.22095 -23.81304 -22.19083 -21.60788 -21.04580 -20.49778 -19.49950 -18.72660 -17.65113 -17.45437 -16.68717 -16.24299 -15.88222 -14.97463 -14.69698 -14.48663 -14.28744 -14.02615 -13.89992 -13.62822 -13.56477 -13.51136 -13.26656 -13.02332 -12.83213 -12.67365 -12.56195 -12.36845 -12.17797 -12.12152 -11.91043 -11.52299 -11.34828 -11.10524 -10.85019 -10.69049 -10.40913 -10.28297 -10.21012 -10.03347 -9.85004 -9.81902 -9.70247 -9.46586 -9.08497 -8.77623 -8.45445 -6.71990 -5.81315 -3.24084 0.48271 0.83152 2.57125 2.94676 3.31034 3.34176 3.36698 3.42631 3.43188 4.14765 4.24044 4.46571 4.57774 4.72846 4.89676 5.03973 5.09852 5.17175 5.26798 5.27685 5.30546 5.36822 5.37347 5.45816 5.56023 5.61723 5.67093 5.82333 5.85211 5.89482 5.93667 6.06036 6.12932 6.20729 6.22747 6.29948 6.40074 6.55530 6.62669 6.73220 6.85627 6.92147 7.09464 7.33083 7.53977 7.58965 7.65131 7.76594 8.24515 8.41832 9.17953 9.81306 10.37569 11.27198 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020829 B = 0.002822 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.965488 B = 9918.439224 C =10561.917155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.013 3.987 3 C -0.197 4.197 4 C 0.328 3.672 5 O -0.481 6.481 6 N -0.508 5.508 7 C 0.193 3.807 8 C -0.112 4.112 9 C -0.189 4.189 10 C 0.569 3.431 11 O -0.525 6.525 12 N -0.712 5.712 13 C 0.156 3.844 14 H 0.084 0.916 15 C -0.147 4.147 16 C 0.174 3.826 17 N -0.592 5.592 18 C -0.256 4.256 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.901 5.901 22 Si 0.902 3.098 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.155 3.845 27 C -0.114 4.114 28 H 0.071 0.929 29 C -0.143 4.143 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.146 0.854 34 H 0.402 0.598 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.396 0.604 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.090 0.910 42 H 0.021 0.979 43 H 0.255 0.745 44 H 0.021 0.979 45 H 0.058 0.942 46 H 0.053 0.947 47 H 0.046 0.954 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.064 16.162 1.418 21.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.005 3.995 3 C -0.218 4.218 4 C 0.150 3.850 5 O -0.289 6.289 6 N -0.228 5.228 7 C 0.055 3.945 8 C -0.169 4.169 9 C -0.194 4.194 10 C 0.352 3.648 11 O -0.402 6.402 12 N -0.362 5.362 13 C 0.053 3.947 14 H 0.102 0.898 15 C -0.187 4.187 16 C 0.047 3.953 17 N -0.314 5.314 18 C -0.385 4.385 19 H 0.083 0.917 20 C -0.195 4.195 21 N -0.545 5.545 22 Si 0.732 3.268 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.028 3.972 27 C -0.135 4.135 28 H 0.090 0.910 29 C -0.201 4.201 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.163 0.837 34 H 0.260 0.740 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.229 0.771 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.108 0.892 42 H 0.039 0.961 43 H 0.065 0.935 44 H 0.039 0.961 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.065 0.935 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.533 15.710 -0.038 21.401 hybrid contribution -1.432 0.425 1.367 2.025 sum 13.101 16.135 1.329 20.827 Atomic orbital electron populations 1.20976 0.89097 1.04490 1.03769 1.20248 0.97099 0.90818 0.91289 1.21876 0.93703 0.99381 1.06826 1.19230 0.87035 0.85016 0.93717 1.84732 1.76001 1.34094 1.34025 1.66977 1.41871 0.97832 1.16106 1.21044 0.89189 0.93119 0.91180 1.20872 1.00327 0.91546 1.04178 1.20830 0.94851 0.94722 1.09004 1.17831 0.78603 0.83745 0.84589 1.90851 1.53884 1.64267 1.31150 1.46367 1.58689 1.23539 1.07607 1.21138 0.92491 0.82266 0.98829 0.89798 1.22580 0.94003 1.01681 1.00467 1.20763 0.99660 0.86459 0.88401 1.44092 0.99641 1.59450 1.28243 1.19121 0.91919 1.37184 0.90294 0.91682 1.25046 0.99268 0.99509 0.95717 1.70026 1.22167 1.50950 1.11348 0.86378 0.82068 0.78068 0.80281 1.21062 1.21632 1.20881 1.20892 0.85723 0.91652 0.98967 1.21974 0.95118 1.00048 0.96403 0.91046 1.21788 0.95821 1.00809 1.01669 0.89534 0.90214 0.90011 0.83658 0.73987 0.89404 0.89696 0.90084 0.77061 0.92605 0.92819 0.89194 0.96128 0.93497 0.96145 0.92364 0.92783 0.93496 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 9.69 36.01 0.35 -0.86 16 2 C 0.01 0.14 5.95 -103.96 -0.62 -0.47 16 3 C -0.20 -1.87 9.72 -39.34 -0.38 -2.25 16 4 C 0.33 3.50 7.74 -16.96 -0.13 3.37 16 5 O -0.48 -4.15 13.55 -18.18 -0.25 -4.40 16 6 N -0.51 -6.23 10.28 -9.20 -0.09 -6.32 16 7 C 0.19 2.33 6.82 -82.18 -0.56 1.77 16 8 C -0.11 -1.14 9.78 36.00 0.35 -0.79 16 9 C -0.19 -2.35 5.65 -104.82 -0.59 -2.94 16 10 C 0.57 8.15 4.29 -12.43 -0.05 8.10 16 11 O -0.53 -9.71 16.77 5.29 0.09 -9.63 16 12 N -0.71 -9.28 4.36 -54.78 -0.24 -9.52 16 13 C 0.16 2.51 1.88 -67.89 -0.13 2.39 16 14 H 0.08 1.55 7.58 -51.93 -0.39 1.15 16 15 C -0.15 -2.76 5.65 -26.61 -0.15 -2.91 16 16 C 0.17 4.07 5.31 -3.72 -0.02 4.05 16 17 N -0.59 -14.26 2.99 -172.32 -0.52 -14.77 16 18 C -0.26 -6.80 9.58 -15.06 -0.14 -6.94 16 19 H 0.07 1.69 7.89 -52.49 -0.41 1.27 16 20 C 0.00 0.09 4.91 -17.43 -0.09 0.01 16 21 N -0.90 -25.83 11.19 55.49 0.62 -25.21 16 22 Si 0.90 21.26 29.59 -169.99 -5.03 16.23 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.15 3.04 5.80 -3.71 -0.02 3.02 16 27 C -0.11 -1.77 2.46 -90.50 -0.22 -1.99 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 29 C -0.14 -1.75 9.03 37.16 0.34 -1.41 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 32 H 0.08 0.98 7.19 -51.93 -0.37 0.60 16 33 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.40 1.32 9.06 45.56 0.41 1.74 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.82 7.06 -51.93 -0.37 0.45 16 38 H 0.40 4.23 8.29 -40.82 -0.34 3.90 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.09 2.37 6.04 -51.93 -0.31 2.06 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 46 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.05 0.49 7.37 -51.93 -0.38 0.10 16 48 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 388.59 15.07 5.86 5.86 Total: -1.00 -33.07 388.59 -8.42 -41.49 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -6.79 Total: 4.14 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -2.07 Total: 2.13 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.23 Total: -55.82 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.16 Total: -14.03 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.07 -8.42 -41.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000945062653.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.558 kcal (2) G-P(sol) polarization free energy of solvation -33.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds