Wall clock time and date at job start Tue Mar 31 2020 17:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35926 * 117.00401 * 2 1 4 4 C 1.38857 * 120.39962 * 0.02562 * 3 2 1 5 5 N 1.31878 * 120.99814 * 179.97438 * 4 3 2 6 6 C 1.31689 * 121.94161 * 0.02562 * 5 4 3 7 7 C 1.39526 * 120.68974 * 0.02562 * 6 5 4 8 8 C 1.47856 * 120.52879 * 179.97438 * 7 6 5 9 9 O 1.21547 * 119.99599 * 185.88723 * 8 7 6 10 10 N 1.34771 * 120.00010 * 5.88841 * 8 7 6 11 11 C 1.46501 * 119.99995 * 179.97438 * 10 8 7 12 12 H 1.09005 * 109.45917 * 325.00192 * 11 10 8 13 13 C 1.53044 * 109.45842 * 84.97082 * 11 10 8 14 14 C 1.53193 * 109.31313 * 181.38547 * 13 11 10 15 15 N 1.46929 * 108.77531 * 305.37008 * 14 13 11 16 16 C 1.36935 * 120.63040 * 233.58504 * 15 14 13 17 17 H 1.07999 * 120.00244 * 151.69061 * 16 15 14 18 18 C 1.38816 * 120.00005 * 331.69539 * 16 15 14 19 19 N 1.31612 * 120.00163 * 159.08020 * 18 16 15 20 20 Si 1.86798 * 119.99824 * 339.07756 * 18 16 15 21 21 H 1.48500 * 109.47423 * 89.70020 * 20 18 16 22 22 H 1.48503 * 109.47348 * 209.69954 * 20 18 16 23 23 H 1.48501 * 109.47311 * 329.69987 * 20 18 16 24 24 C 1.46927 * 118.74030 * 53.60840 * 15 14 13 25 25 H 1.08997 * 109.58974 * 66.31912 * 24 15 14 26 26 C 1.52999 * 109.58506 * 186.60320 * 24 15 14 27 27 C 1.53034 * 109.46170 * 205.02908 * 11 10 8 28 28 C 1.38834 * 120.40996 * 179.72654 * 3 2 1 29 29 C 1.50708 * 120.87758 * 0.02562 * 28 3 2 30 30 H 1.09007 * 109.46734 * 299.99733 * 1 2 3 31 31 H 1.09004 * 109.47289 * 59.99473 * 1 2 3 32 32 H 1.08995 * 109.47264 * 179.97438 * 1 2 3 33 33 H 1.07998 * 119.50511 * 359.97438 * 4 3 2 34 34 H 1.08001 * 119.65334 * 179.97438 * 6 5 4 35 35 H 0.96997 * 120.00182 * 359.97438 * 10 8 7 36 36 H 1.08990 * 109.50142 * 301.34048 * 13 11 10 37 37 H 1.09005 * 109.49242 * 61.43738 * 13 11 10 38 38 H 1.09003 * 109.58456 * 65.15160 * 14 13 11 39 39 H 1.08995 * 109.58901 * 185.44190 * 14 13 11 40 40 H 0.97005 * 120.00261 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.46847 * 60.00378 * 26 24 15 42 42 H 1.09008 * 109.46819 * 179.97438 * 26 24 15 43 43 H 1.08997 * 109.47345 * 299.99470 * 26 24 15 44 44 H 1.09004 * 109.49776 * 298.56514 * 27 11 10 45 45 H 1.08998 * 109.49666 * 58.66421 * 27 11 10 46 46 H 1.08995 * 109.46922 * 97.17658 * 29 28 3 47 47 H 1.09003 * 109.46647 * 217.17167 * 29 28 3 48 48 H 1.08994 * 109.47176 * 337.17571 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2981 2.3809 0.0005 5 7 1.8846 3.5621 0.0010 6 6 3.1953 3.6892 0.0006 7 6 4.0199 2.5636 -0.0010 8 6 5.4911 2.7104 -0.0021 9 8 6.1997 1.7288 -0.1115 10 7 6.0465 3.9324 0.1182 11 6 7.5043 4.0778 0.1176 12 1 7.9550 3.2200 0.6169 13 6 8.0089 4.1509 -1.3254 14 6 9.5363 4.2680 -1.3227 15 7 9.9211 5.4157 -0.4900 16 6 10.7362 6.3969 -0.9880 17 1 10.6622 7.4050 -0.6077 18 6 11.6573 6.0960 -1.9819 19 7 12.1397 7.0543 -2.7442 20 14 12.2124 4.3307 -2.2373 21 1 11.3093 3.6635 -3.2091 22 1 13.6009 4.3196 -2.7637 23 1 12.1683 3.6056 -0.9421 24 6 9.4153 5.4903 0.8874 25 1 9.8430 4.6803 1.4782 26 6 9.8038 6.8355 1.5043 27 6 7.8891 5.3597 0.8597 28 6 3.4320 1.2936 0.0057 29 6 4.2809 0.0483 0.0114 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 0.2197 2.3227 0.0005 34 1 3.6366 4.6749 0.0006 35 1 5.4811 4.7157 0.2051 36 1 7.7142 3.2480 -1.8600 37 1 7.5780 5.0227 -1.8177 38 1 9.9719 3.3568 -0.9128 39 1 9.8931 4.4173 -2.3417 40 1 12.7837 6.8440 -3.4385 41 1 9.3709 7.6439 0.9151 42 1 9.4273 6.8890 2.5259 43 1 10.8895 6.9319 1.5114 44 1 7.4594 6.2201 0.3465 45 1 7.5092 5.3172 1.8804 46 1 4.5959 -0.1813 -1.0064 47 1 5.1596 0.2105 0.6358 48 1 3.7013 -0.7847 0.4090 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947444945.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:43 Heat of formation + Delta-G solvation = -10.093313 kcal Electronic energy + Delta-G solvation = -29083.170320 eV Core-core repulsion = 25139.423480 eV Total energy + Delta-G solvation = -3943.746840 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.33628 -39.82808 -38.44588 -37.80853 -35.00045 -33.84534 -32.51197 -31.98580 -31.07362 -29.84570 -28.12026 -27.96813 -26.57771 -24.97925 -23.98284 -22.82939 -22.45603 -21.25539 -20.37810 -19.52610 -18.48224 -17.75188 -16.75789 -16.65358 -16.43052 -16.35334 -15.89262 -15.18009 -15.09889 -14.59474 -14.54319 -14.02430 -13.93812 -13.75407 -13.47408 -13.23471 -13.18446 -12.98199 -12.89471 -12.50696 -12.47927 -12.11561 -11.97761 -11.89328 -11.84048 -11.36516 -11.15976 -11.01450 -10.59736 -10.40762 -10.29131 -10.20231 -10.03953 -9.83099 -9.79055 -9.49426 -9.39942 -8.85404 -8.83826 -8.57791 -6.95771 -5.93181 -3.29322 0.29875 0.86421 2.60245 2.70591 3.17601 3.35813 3.50938 3.52060 3.55509 3.96722 4.13212 4.39422 4.42600 4.55883 4.60559 4.65297 4.80818 4.88024 4.89008 5.02938 5.14234 5.27081 5.28668 5.38681 5.45451 5.60543 5.63349 5.74515 5.86077 5.90671 5.96896 6.00420 6.08173 6.19263 6.23435 6.28614 6.35838 6.41062 6.48974 6.62978 6.69974 6.72592 6.79040 6.95042 7.04628 7.45448 7.49612 7.98279 8.15229 8.36337 8.95509 9.74716 10.11814 11.22322 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022631 B = 0.002615 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.931327 B =10706.066648 C =11267.392506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.065 3.935 4 C 0.038 3.962 5 N -0.457 5.457 6 C 0.102 3.898 7 C -0.151 4.151 8 C 0.561 3.439 9 O -0.525 6.525 10 N -0.715 5.715 11 C 0.151 3.849 12 H 0.085 0.915 13 C -0.141 4.141 14 C 0.129 3.871 15 N -0.602 5.602 16 C -0.259 4.259 17 H 0.092 0.908 18 C 0.024 3.976 19 N -0.908 5.908 20 Si 0.878 3.122 21 H -0.288 1.288 22 H -0.304 1.304 23 H -0.272 1.272 24 C 0.175 3.825 25 H 0.032 0.968 26 C -0.136 4.136 27 C -0.136 4.136 28 C -0.012 4.012 29 C -0.113 4.113 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.162 0.838 34 H 0.162 0.838 35 H 0.396 0.604 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.026 0.974 39 H 0.077 0.923 40 H 0.262 0.738 41 H 0.058 0.942 42 H 0.040 0.960 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.060 0.940 46 H 0.081 0.919 47 H 0.098 0.902 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.694 -10.735 7.920 27.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.017 3.983 4 C -0.119 4.119 5 N -0.166 5.166 6 C -0.058 4.058 7 C -0.157 4.157 8 C 0.346 3.654 9 O -0.402 6.402 10 N -0.366 5.366 11 C 0.048 3.952 12 H 0.103 0.897 13 C -0.181 4.181 14 C 0.003 3.997 15 N -0.327 5.327 16 C -0.387 4.387 17 H 0.110 0.890 18 C -0.175 4.175 19 N -0.551 5.551 20 Si 0.709 3.291 21 H -0.215 1.215 22 H -0.232 1.232 23 H -0.197 1.197 24 C 0.068 3.932 25 H 0.050 0.950 26 C -0.194 4.194 27 C -0.176 4.176 28 C -0.021 4.021 29 C -0.169 4.169 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.123 0.877 33 H 0.179 0.821 34 H 0.180 0.820 35 H 0.231 0.769 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.043 0.957 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.099 0.901 47 H 0.116 0.884 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -23.473 -10.834 7.728 26.983 hybrid contribution 0.184 -1.165 -0.360 1.233 sum -23.290 -11.999 7.368 27.215 Atomic orbital electron populations 1.23155 0.77895 1.04563 1.01596 1.86103 1.21575 1.25502 1.88586 1.19770 0.92342 0.86074 1.00076 1.23071 1.00701 0.87086 1.01010 1.67534 1.11888 1.25960 1.11198 1.22866 0.88718 0.98167 0.96032 1.20820 0.95082 0.93746 1.06023 1.17902 0.86494 0.83829 0.77146 1.90758 1.62992 1.37416 1.49063 1.46204 1.08858 1.07914 1.73603 1.21059 0.77489 0.99268 0.97387 0.89674 1.22399 0.98937 1.01415 0.95350 1.21319 0.91590 0.90198 0.96594 1.44504 1.55969 1.24506 1.07688 1.18914 1.11633 0.89835 1.18305 0.89047 1.25298 0.97601 0.96692 0.97863 1.69832 1.33004 1.32109 1.20159 0.87039 0.77029 0.86919 0.78119 1.21525 1.23234 1.19669 1.20372 0.89835 0.96493 0.86479 0.95034 1.21808 1.02578 0.97089 0.97902 1.22394 0.99747 0.96420 0.99046 1.19869 0.90779 0.96008 0.95442 1.20906 0.99374 0.92415 1.04165 0.92333 0.92308 0.87720 0.82121 0.82049 0.76861 0.92333 0.91514 0.95660 0.90506 0.92816 0.92310 0.94053 0.91548 0.91184 0.92091 0.90066 0.88399 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.82 101.05 0.99 1.09 16 2 O -0.31 -2.69 9.56 -19.51 -0.19 -2.87 16 3 C 0.06 0.66 6.68 -39.13 -0.26 0.40 16 4 C 0.04 0.36 10.21 -17.30 -0.18 0.18 16 5 N -0.46 -4.94 10.34 -12.79 -0.13 -5.07 16 6 C 0.10 1.06 10.69 -17.13 -0.18 0.88 16 7 C -0.15 -1.81 5.89 -104.84 -0.62 -2.42 16 8 C 0.56 7.74 7.69 -12.33 -0.09 7.65 16 9 O -0.52 -8.78 13.20 5.32 0.07 -8.71 16 10 N -0.72 -9.05 5.03 -54.71 -0.28 -9.32 16 11 C 0.15 2.34 2.42 -67.89 -0.16 2.18 16 12 H 0.09 1.45 7.58 -51.93 -0.39 1.06 16 13 C -0.14 -2.54 5.65 -26.61 -0.15 -2.69 16 14 C 0.13 2.82 4.21 -3.71 -0.02 2.81 16 15 N -0.60 -13.76 2.75 -164.77 -0.45 -14.22 16 16 C -0.26 -6.93 9.05 -15.06 -0.14 -7.07 16 17 H 0.09 2.57 6.37 -52.49 -0.33 2.23 16 18 C 0.02 0.69 5.22 -17.43 -0.09 0.60 16 19 N -0.91 -27.50 13.97 55.49 0.78 -26.72 16 20 Si 0.88 22.46 24.38 -169.99 -4.14 18.32 16 21 H -0.29 -7.16 6.50 56.52 0.37 -6.79 16 22 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 23 H -0.27 -6.89 6.89 56.52 0.39 -6.50 16 24 C 0.18 3.26 3.50 -67.60 -0.24 3.03 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 26 C -0.14 -2.38 7.94 37.16 0.29 -2.08 16 27 C -0.14 -2.04 4.84 -26.61 -0.13 -2.17 16 28 C -0.01 -0.14 5.97 -103.76 -0.62 -0.76 16 29 C -0.11 -1.31 8.66 36.01 0.31 -0.99 16 30 H 0.06 0.19 7.67 -51.92 -0.40 -0.20 16 31 H 0.06 0.20 7.68 -51.93 -0.40 -0.19 16 32 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.16 0.99 6.30 -52.49 -0.33 0.66 16 34 H 0.16 1.29 6.46 -52.49 -0.34 0.95 16 35 H 0.40 3.89 6.70 -40.82 -0.27 3.62 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.03 0.56 7.21 -51.93 -0.37 0.19 16 39 H 0.08 1.85 4.56 -51.93 -0.24 1.62 16 40 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 41 H 0.06 1.07 7.45 -51.93 -0.39 0.68 16 42 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 43 H 0.07 1.28 7.61 -51.93 -0.40 0.88 16 44 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.10 1.28 6.05 -51.93 -0.31 0.97 16 48 H 0.07 0.68 7.42 -51.93 -0.39 0.30 16 LS Contribution 370.63 15.07 5.59 5.59 Total: -1.00 -32.90 370.63 -7.16 -40.06 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.12 Total: 2.32 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -1.28 Total: 0.63 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: -0.09 Total: -55.33 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -0.12 Total: -11.58 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.14 Total: 18.32 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.90 -7.16 -40.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947444945.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.964 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds