Wall clock time and date at job start Tue Mar 31 2020 17:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35926 * 117.00401 * 2 1 4 4 C 1.38857 * 120.39962 * 0.02562 * 3 2 1 5 5 N 1.31878 * 120.99814 * 179.97438 * 4 3 2 6 6 C 1.31689 * 121.94161 * 0.02562 * 5 4 3 7 7 C 1.39526 * 120.68974 * 0.02562 * 6 5 4 8 8 C 1.47856 * 120.52879 * 179.97438 * 7 6 5 9 9 O 1.21547 * 119.99599 * 185.88723 * 8 7 6 10 10 N 1.34771 * 120.00010 * 5.88841 * 8 7 6 11 11 C 1.46501 * 119.99995 * 179.97438 * 10 8 7 12 12 H 1.09005 * 109.45917 * 325.00192 * 11 10 8 13 13 C 1.53044 * 109.45842 * 84.97082 * 11 10 8 14 14 C 1.53193 * 109.31313 * 181.38547 * 13 11 10 15 15 N 1.46929 * 108.77531 * 305.37008 * 14 13 11 16 16 C 1.36935 * 120.63040 * 233.58504 * 15 14 13 17 17 H 1.07999 * 120.00244 * 151.69061 * 16 15 14 18 18 C 1.38816 * 120.00005 * 331.69539 * 16 15 14 19 19 N 1.31612 * 120.00163 * 159.08020 * 18 16 15 20 20 Si 1.86798 * 119.99824 * 339.07756 * 18 16 15 21 21 H 1.48500 * 109.47423 * 89.70020 * 20 18 16 22 22 H 1.48503 * 109.47348 * 209.69954 * 20 18 16 23 23 H 1.48501 * 109.47311 * 329.69987 * 20 18 16 24 24 C 1.46927 * 118.74030 * 53.60840 * 15 14 13 25 25 H 1.08997 * 109.58974 * 66.31912 * 24 15 14 26 26 C 1.52999 * 109.58506 * 186.60320 * 24 15 14 27 27 C 1.53034 * 109.46170 * 205.02908 * 11 10 8 28 28 C 1.38834 * 120.40996 * 179.72654 * 3 2 1 29 29 C 1.50708 * 120.87758 * 0.02562 * 28 3 2 30 30 H 1.09007 * 109.46734 * 299.99733 * 1 2 3 31 31 H 1.09004 * 109.47289 * 59.99473 * 1 2 3 32 32 H 1.08995 * 109.47264 * 179.97438 * 1 2 3 33 33 H 1.07998 * 119.50511 * 359.97438 * 4 3 2 34 34 H 1.08001 * 119.65334 * 179.97438 * 6 5 4 35 35 H 0.96997 * 120.00182 * 359.97438 * 10 8 7 36 36 H 1.08990 * 109.50142 * 301.34048 * 13 11 10 37 37 H 1.09005 * 109.49242 * 61.43738 * 13 11 10 38 38 H 1.09003 * 109.58456 * 65.15160 * 14 13 11 39 39 H 1.08995 * 109.58901 * 185.44190 * 14 13 11 40 40 H 0.97005 * 120.00261 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.46847 * 60.00378 * 26 24 15 42 42 H 1.09008 * 109.46819 * 179.97438 * 26 24 15 43 43 H 1.08997 * 109.47345 * 299.99470 * 26 24 15 44 44 H 1.09004 * 109.49776 * 298.56514 * 27 11 10 45 45 H 1.08998 * 109.49666 * 58.66421 * 27 11 10 46 46 H 1.08995 * 109.46922 * 97.17658 * 29 28 3 47 47 H 1.09003 * 109.46647 * 217.17167 * 29 28 3 48 48 H 1.08994 * 109.47176 * 337.17571 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2981 2.3809 0.0005 5 7 1.8846 3.5621 0.0010 6 6 3.1953 3.6892 0.0006 7 6 4.0199 2.5636 -0.0010 8 6 5.4911 2.7104 -0.0021 9 8 6.1997 1.7288 -0.1115 10 7 6.0465 3.9324 0.1182 11 6 7.5043 4.0778 0.1176 12 1 7.9550 3.2200 0.6169 13 6 8.0089 4.1509 -1.3254 14 6 9.5363 4.2680 -1.3227 15 7 9.9211 5.4157 -0.4900 16 6 10.7362 6.3969 -0.9880 17 1 10.6622 7.4050 -0.6077 18 6 11.6573 6.0960 -1.9819 19 7 12.1397 7.0543 -2.7442 20 14 12.2124 4.3307 -2.2373 21 1 11.3093 3.6635 -3.2091 22 1 13.6009 4.3196 -2.7637 23 1 12.1683 3.6056 -0.9421 24 6 9.4153 5.4903 0.8874 25 1 9.8430 4.6803 1.4782 26 6 9.8038 6.8355 1.5043 27 6 7.8891 5.3597 0.8597 28 6 3.4320 1.2936 0.0057 29 6 4.2809 0.0483 0.0114 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 0.2197 2.3227 0.0005 34 1 3.6366 4.6749 0.0006 35 1 5.4811 4.7157 0.2051 36 1 7.7142 3.2480 -1.8600 37 1 7.5780 5.0227 -1.8177 38 1 9.9719 3.3568 -0.9128 39 1 9.8931 4.4173 -2.3417 40 1 12.7837 6.8440 -3.4385 41 1 9.3709 7.6439 0.9151 42 1 9.4273 6.8890 2.5259 43 1 10.8895 6.9319 1.5114 44 1 7.4594 6.2201 0.3465 45 1 7.5092 5.3172 1.8804 46 1 4.5959 -0.1813 -1.0064 47 1 5.1596 0.2105 0.6358 48 1 3.7013 -0.7847 0.4090 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947444945.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:42 Heat of formation + Delta-G solvation = -33.362530 kcal Electronic energy + Delta-G solvation = -29084.179349 eV Core-core repulsion = 25139.423480 eV Total energy + Delta-G solvation = -3944.755869 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.14927 -40.87531 -39.55940 -38.86307 -36.34284 -34.72259 -34.29150 -33.40107 -32.46863 -31.08777 -28.94972 -28.49291 -28.01632 -26.56208 -25.08426 -24.28942 -23.45251 -22.44539 -21.60268 -21.03352 -19.38955 -18.53669 -18.38644 -17.67245 -17.38625 -17.18958 -17.00871 -16.70345 -16.33893 -16.12726 -15.34566 -15.26215 -15.18149 -15.01414 -14.85635 -14.48786 -14.33645 -13.97840 -13.87086 -13.84423 -13.76535 -13.49233 -13.16036 -12.84678 -12.77277 -12.69862 -12.61449 -12.37353 -12.21813 -11.99888 -11.87776 -11.74381 -11.51545 -11.36348 -11.13837 -10.71902 -10.66649 -10.43710 -10.02925 -9.53941 -8.89720 -8.12230 -5.42447 -0.52402 0.08187 1.29533 1.40511 1.48038 1.73682 1.84979 2.30323 2.43927 2.67198 3.06580 3.25674 3.32444 3.40869 3.61209 3.63651 3.79317 3.93586 4.02067 4.10128 4.21343 4.25101 4.35476 4.40067 4.46464 4.53071 4.57673 4.62605 4.63879 4.70199 4.73653 4.77134 4.84648 4.94561 5.02235 5.03982 5.07237 5.08617 5.14403 5.22054 5.37775 5.47695 5.50316 5.59442 5.93962 6.13280 6.22626 6.47251 6.71299 6.95788 7.13001 7.67974 8.08657 9.07097 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022631 B = 0.002615 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.931327 B =10706.066648 C =11267.392506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.067 3.933 4 C 0.046 3.954 5 N -0.469 5.469 6 C 0.104 3.896 7 C -0.162 4.162 8 C 0.562 3.438 9 O -0.559 6.559 10 N -0.702 5.702 11 C 0.162 3.838 12 H 0.073 0.927 13 C -0.130 4.130 14 C 0.125 3.875 15 N -0.615 5.615 16 C -0.231 4.231 17 H 0.074 0.926 18 C -0.034 4.034 19 N -0.955 5.955 20 Si 0.930 3.070 21 H -0.281 1.281 22 H -0.314 1.314 23 H -0.269 1.269 24 C 0.163 3.837 25 H 0.035 0.965 26 C -0.130 4.130 27 C -0.122 4.122 28 C -0.033 4.033 29 C -0.105 4.105 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.122 0.878 33 H 0.194 0.806 34 H 0.185 0.815 35 H 0.413 0.587 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.023 0.977 39 H 0.050 0.950 40 H 0.258 0.742 41 H 0.047 0.953 42 H 0.082 0.918 43 H 0.039 0.961 44 H 0.075 0.925 45 H 0.097 0.903 46 H 0.071 0.929 47 H 0.080 0.920 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.183 -11.351 9.560 30.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.233 6.233 3 C 0.019 3.981 4 C -0.111 4.111 5 N -0.178 5.178 6 C -0.055 4.055 7 C -0.168 4.168 8 C 0.349 3.651 9 O -0.439 6.439 10 N -0.353 5.353 11 C 0.057 3.943 12 H 0.091 0.909 13 C -0.170 4.170 14 C 0.000 4.000 15 N -0.340 5.340 16 C -0.361 4.361 17 H 0.091 0.909 18 C -0.228 4.228 19 N -0.602 5.602 20 Si 0.761 3.239 21 H -0.208 1.208 22 H -0.243 1.243 23 H -0.194 1.194 24 C 0.058 3.942 25 H 0.053 0.947 26 C -0.187 4.187 27 C -0.161 4.161 28 C -0.042 4.042 29 C -0.161 4.161 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.140 0.860 33 H 0.210 0.790 34 H 0.202 0.798 35 H 0.251 0.749 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.040 0.960 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.101 0.899 43 H 0.058 0.942 44 H 0.093 0.907 45 H 0.115 0.885 46 H 0.090 0.910 47 H 0.098 0.902 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -27.027 -11.462 9.407 30.827 hybrid contribution 1.094 -1.018 -0.789 1.690 sum -25.933 -12.480 8.618 30.042 Atomic orbital electron populations 1.23508 0.75561 1.06308 1.02885 1.86097 1.23977 1.24917 1.88279 1.19772 0.91805 0.87008 0.99533 1.23579 1.02139 0.86293 0.99113 1.67630 1.11898 1.26610 1.11702 1.23168 0.88637 0.98566 0.95109 1.20654 0.93802 0.94513 1.07799 1.18197 0.87279 0.83443 0.76207 1.90752 1.63956 1.38568 1.50596 1.45908 1.07706 1.08476 1.73242 1.20740 0.79055 0.99181 0.95314 0.90928 1.22224 0.96007 1.01279 0.97484 1.21264 0.94238 0.89585 0.94963 1.44682 1.55631 1.23824 1.09840 1.18935 1.10566 0.90083 1.16475 0.90873 1.25809 0.98839 0.99337 0.98817 1.69936 1.34800 1.33751 1.21723 0.86182 0.76022 0.83630 0.78091 1.20845 1.24269 1.19368 1.20702 0.92282 0.97227 0.84004 0.94679 1.21739 1.00911 0.95961 1.00092 1.22220 0.96649 0.96053 1.01202 1.20013 0.91890 0.95882 0.96449 1.20763 0.98907 0.93186 1.03215 0.90872 0.91069 0.85956 0.78977 0.79829 0.74855 0.92471 0.91535 0.95954 0.93141 0.93253 0.93386 0.89922 0.94160 0.90663 0.88461 0.91045 0.90183 0.90456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.82 113.37 1.11 1.18 16 2 O -0.32 -4.91 9.56 -92.72 -0.89 -5.79 16 3 C 0.07 1.21 6.68 22.56 0.15 1.36 16 4 C 0.05 0.71 10.21 84.83 0.87 1.58 16 5 N -0.47 -8.74 10.34 -194.39 -2.01 -10.75 16 6 C 0.10 1.90 10.69 85.03 0.91 2.81 16 7 C -0.16 -3.61 5.89 -20.01 -0.12 -3.73 16 8 C 0.56 14.74 7.69 86.79 0.67 15.41 16 9 O -0.56 -18.53 13.20 -3.86 -0.05 -18.58 16 10 N -0.70 -16.00 5.03 -445.28 -2.24 -18.24 16 11 C 0.16 4.66 2.42 45.02 0.11 4.77 16 12 H 0.07 2.35 7.58 -2.38 -0.02 2.33 16 13 C -0.13 -4.55 5.65 30.67 0.17 -4.38 16 14 C 0.13 5.45 4.21 86.36 0.36 5.81 16 15 N -0.61 -27.81 2.75 -675.21 -1.86 -29.66 16 16 C -0.23 -12.54 9.05 84.03 0.76 -11.78 16 17 H 0.07 4.20 6.37 -2.91 -0.02 4.18 16 18 C -0.03 -1.96 5.22 84.86 0.44 -1.51 16 19 N -0.96 -59.74 13.97 21.65 0.30 -59.44 16 20 Si 0.93 47.68 24.38 68.60 1.67 49.35 16 21 H -0.28 -13.93 6.50 99.48 0.65 -13.28 16 22 H -0.31 -16.40 7.11 99.48 0.71 -15.70 16 23 H -0.27 -13.43 6.89 99.48 0.69 -12.74 16 24 C 0.16 5.76 3.50 44.98 0.16 5.92 16 25 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 26 C -0.13 -4.28 7.94 71.98 0.57 -3.71 16 27 C -0.12 -3.26 4.84 30.67 0.15 -3.11 16 28 C -0.03 -0.75 5.97 -19.30 -0.12 -0.86 16 29 C -0.10 -2.42 8.66 71.24 0.62 -1.80 16 30 H 0.07 0.22 7.67 -2.38 -0.02 0.20 16 31 H 0.07 0.25 7.68 -2.38 -0.02 0.23 16 32 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.19 1.59 6.30 -2.91 -0.02 1.57 16 34 H 0.18 2.29 6.46 -2.91 -0.02 2.27 16 35 H 0.41 6.67 6.70 -92.71 -0.62 6.05 16 36 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 38 H 0.02 0.99 7.21 -2.39 -0.02 0.97 16 39 H 0.05 2.45 4.56 -2.39 -0.01 2.44 16 40 H 0.26 15.56 8.31 -92.70 -0.77 14.79 16 41 H 0.05 1.67 7.45 -2.39 -0.02 1.66 16 42 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 43 H 0.04 1.52 7.61 -2.39 -0.02 1.50 16 44 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 45 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.08 2.13 6.05 -2.39 -0.01 2.12 16 48 H 0.08 1.55 7.42 -2.39 -0.02 1.53 16 Total: -1.00 -73.60 370.63 2.03 -71.57 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.28 Total: 13.59 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 6.82 Total: 7.96 kcal Atomic # 7 Polarization: -112.29 SS G_CDS: -5.81 Total: -118.10 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.94 Total: -24.38 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 1.67 Total: 49.35 kcal Total: -73.60 2.03 -71.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947444945.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.206 kcal (2) G-P(sol) polarization free energy of solvation -73.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds