Wall clock time and date at job start Tue Mar 31 2020 17:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35922 * 117.00140 * 2 1 4 4 C 1.38858 * 120.40415 * 0.02562 * 3 2 1 5 5 N 1.31876 * 121.00179 * 179.97438 * 4 3 2 6 6 C 1.31681 * 121.93966 * 0.02562 * 5 4 3 7 7 C 1.39528 * 120.69426 * 0.02562 * 6 5 4 8 8 C 1.47854 * 120.53490 * 180.02562 * 7 6 5 9 9 O 1.21545 * 119.99916 * 185.98096 * 8 7 6 10 10 N 1.34779 * 119.99982 * 5.97213 * 8 7 6 11 11 C 1.46498 * 120.00049 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.45768 * 35.03449 * 11 10 8 13 13 C 1.53041 * 109.46111 * 275.07169 * 11 10 8 14 14 C 1.53185 * 109.31385 * 178.61537 * 13 11 10 15 15 N 1.46930 * 108.77779 * 54.63255 * 14 13 11 16 16 C 1.36936 * 120.62937 * 126.37025 * 15 14 13 17 17 H 1.07998 * 119.99575 * 208.88907 * 16 15 14 18 18 C 1.38807 * 120.00058 * 28.88275 * 16 15 14 19 19 N 1.31617 * 120.00222 * 16.64768 * 18 16 15 20 20 Si 1.86803 * 120.00335 * 196.64003 * 18 16 15 21 21 H 1.48504 * 109.46568 * 0.02562 * 20 18 16 22 22 H 1.48491 * 109.47474 * 120.00171 * 20 18 16 23 23 H 1.48501 * 109.47500 * 240.00737 * 20 18 16 24 24 C 1.46926 * 118.73966 * 306.39780 * 15 14 13 25 25 H 1.09007 * 109.58359 * 293.81991 * 24 15 14 26 26 C 1.52994 * 109.58757 * 173.39158 * 24 15 14 27 27 C 1.53039 * 109.45860 * 155.00246 * 11 10 8 28 28 C 1.38842 * 120.40692 * 179.71934 * 3 2 1 29 29 C 1.50698 * 120.87946 * 0.02562 * 28 3 2 30 30 H 1.08995 * 109.47260 * 299.99839 * 1 2 3 31 31 H 1.09000 * 109.47374 * 59.99448 * 1 2 3 32 32 H 1.09002 * 109.47317 * 179.97438 * 1 2 3 33 33 H 1.08006 * 119.50097 * 359.97353 * 4 3 2 34 34 H 1.08007 * 119.65731 * 180.02562 * 6 5 4 35 35 H 0.97006 * 119.99533 * 0.02562 * 10 8 7 36 36 H 1.09001 * 109.49289 * 298.56828 * 13 11 10 37 37 H 1.08999 * 109.49554 * 58.66289 * 13 11 10 38 38 H 1.09007 * 109.58593 * 294.84986 * 14 13 11 39 39 H 1.09002 * 109.70766 * 174.49323 * 14 13 11 40 40 H 0.97000 * 120.00709 * 180.02562 * 19 18 16 41 41 H 1.08998 * 109.47271 * 300.70700 * 26 24 15 42 42 H 1.09008 * 109.47013 * 60.70926 * 26 24 15 43 43 H 1.08998 * 109.47293 * 180.70629 * 26 24 15 44 44 H 1.08994 * 109.50111 * 301.34048 * 27 11 10 45 45 H 1.09002 * 109.49793 * 61.43818 * 27 11 10 46 46 H 1.09005 * 109.47233 * 95.71747 * 29 28 3 47 47 H 1.08995 * 109.46976 * 215.71653 * 29 28 3 48 48 H 1.09000 * 109.47165 * 335.71704 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2981 2.3809 0.0005 5 7 1.8845 3.5621 0.0010 6 6 3.1952 3.6892 0.0006 7 6 4.0198 2.5637 -0.0010 8 6 5.4911 2.7104 -0.0010 9 8 6.1997 1.7291 -0.1121 10 7 6.0465 3.9323 0.1220 11 6 7.5042 4.0777 0.1215 12 1 7.9422 3.3431 -0.5542 13 6 8.0397 3.8511 1.5372 14 6 9.5669 3.9698 1.5261 15 7 9.9364 5.2662 0.9415 16 6 10.7633 6.1250 1.6151 17 1 10.6769 7.1904 1.4605 18 6 11.7125 5.6263 2.4967 19 7 12.0490 4.3547 2.4513 20 14 12.5125 6.7599 3.7474 21 1 11.9647 8.1317 3.5937 22 1 12.2278 6.2645 5.1180 23 1 13.9805 6.7850 3.5251 24 6 9.4012 5.6238 -0.3793 25 1 9.8124 4.9532 -1.1339 26 6 9.7793 7.0684 -0.7119 27 6 7.8758 5.4865 -0.3469 28 6 3.4320 1.2935 0.0059 29 6 4.2809 0.0484 0.0118 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 0.2196 2.3227 0.0005 34 1 3.6366 4.6749 0.0014 35 1 5.4809 4.7153 0.2109 36 1 7.6213 4.6009 2.2087 37 1 7.7546 2.8562 1.8790 38 1 9.9917 3.1644 0.9269 39 1 9.9479 3.9068 2.5455 40 1 12.7120 4.0060 3.0676 41 1 9.3716 7.7349 0.0482 42 1 10.8649 7.1639 -0.7344 43 1 9.3707 7.3358 -1.6864 44 1 7.4740 5.6555 -1.3459 45 1 7.4591 6.2208 0.3424 46 1 4.5746 -0.1960 -1.0091 47 1 5.1723 0.2193 0.6152 48 1 3.7098 -0.7787 0.4334 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947444946.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:45 Heat of formation + Delta-G solvation = -36.724482 kcal Electronic energy + Delta-G solvation = -28990.638394 eV Core-core repulsion = 25045.736739 eV Total energy + Delta-G solvation = -3944.901654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.13782 -40.81979 -39.40493 -38.82187 -36.27879 -34.71396 -34.27078 -33.20025 -32.01551 -30.84879 -28.92261 -28.48202 -27.90794 -26.70975 -25.11948 -23.86227 -23.30250 -22.47854 -21.53255 -20.95637 -19.37537 -18.52493 -18.25035 -17.54355 -17.36942 -17.03842 -17.00059 -16.70053 -16.11909 -15.74774 -15.55244 -15.17096 -15.10136 -14.82817 -14.78603 -14.51093 -14.25670 -13.94950 -13.84395 -13.75073 -13.32740 -13.17358 -12.94564 -12.74842 -12.71470 -12.64976 -12.57214 -12.37391 -12.33878 -12.04590 -11.81707 -11.69432 -11.48902 -11.33090 -11.06294 -10.67077 -10.54161 -10.42375 -10.00455 -9.53105 -8.63825 -7.82468 -5.27651 -0.51466 0.08649 1.47230 1.49697 1.59339 1.74326 1.88125 2.31852 2.53999 2.68264 3.26642 3.33763 3.41500 3.59519 3.62194 3.66682 3.86416 4.02840 4.07806 4.11781 4.28684 4.36069 4.40912 4.41840 4.53774 4.63615 4.63803 4.69250 4.73727 4.77688 4.77900 4.83216 4.97308 5.03811 5.09231 5.10087 5.17078 5.18571 5.38033 5.42203 5.49394 5.56903 5.58027 5.73464 5.75621 6.14255 6.44613 6.49900 6.71529 7.16242 7.18760 7.91066 8.43503 9.25142 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023464 B = 0.002444 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.048831 B =11454.295744 C =11853.901514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.321 6.321 3 C 0.067 3.933 4 C 0.046 3.954 5 N -0.468 5.468 6 C 0.105 3.895 7 C -0.162 4.162 8 C 0.559 3.441 9 O -0.561 6.561 10 N -0.701 5.701 11 C 0.164 3.836 12 H 0.061 0.939 13 C -0.130 4.130 14 C 0.183 3.817 15 N -0.603 5.603 16 C -0.245 4.245 17 H 0.081 0.919 18 C -0.059 4.059 19 N -0.941 5.941 20 Si 0.962 3.038 21 H -0.261 1.261 22 H -0.296 1.296 23 H -0.297 1.297 24 C 0.159 3.841 25 H 0.012 0.988 26 C -0.127 4.127 27 C -0.119 4.119 28 C -0.034 4.034 29 C -0.106 4.106 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.122 0.878 33 H 0.195 0.805 34 H 0.187 0.813 35 H 0.413 0.587 36 H 0.062 0.938 37 H 0.045 0.955 38 H -0.012 1.012 39 H 0.054 0.946 40 H 0.246 0.754 41 H 0.055 0.945 42 H 0.038 0.962 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.562 -2.837 -6.849 27.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.233 6.233 3 C 0.019 3.981 4 C -0.111 4.111 5 N -0.177 5.177 6 C -0.054 4.054 7 C -0.168 4.168 8 C 0.346 3.654 9 O -0.441 6.441 10 N -0.352 5.352 11 C 0.059 3.941 12 H 0.079 0.921 13 C -0.171 4.171 14 C 0.056 3.944 15 N -0.327 5.327 16 C -0.375 4.375 17 H 0.099 0.901 18 C -0.253 4.253 19 N -0.588 5.588 20 Si 0.791 3.209 21 H -0.185 1.185 22 H -0.223 1.223 23 H -0.224 1.224 24 C 0.053 3.947 25 H 0.029 0.971 26 C -0.184 4.184 27 C -0.158 4.158 28 C -0.043 4.043 29 C -0.163 4.163 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.140 0.860 33 H 0.211 0.789 34 H 0.203 0.797 35 H 0.251 0.749 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.006 0.994 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.058 0.942 43 H 0.096 0.904 44 H 0.110 0.890 45 H 0.096 0.904 46 H 0.093 0.907 47 H 0.095 0.905 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -26.393 -3.032 -6.854 27.436 hybrid contribution 1.243 -0.419 0.940 1.614 sum -25.150 -3.451 -5.914 26.065 Atomic orbital electron populations 1.23512 0.75528 1.06321 1.02918 1.86099 1.24017 1.24929 1.88275 1.19762 0.91703 0.87057 0.99538 1.23587 1.02146 0.86248 0.99095 1.67631 1.11803 1.26559 1.11700 1.23168 0.88616 0.98518 0.95079 1.20660 0.93685 0.94619 1.07798 1.18256 0.87371 0.83479 0.76272 1.90754 1.64063 1.38509 1.50781 1.45929 1.07721 1.08478 1.73119 1.20709 0.78739 0.98406 0.96232 0.92113 1.22308 0.97689 1.00007 0.97053 1.20441 0.90113 0.86038 0.97759 1.44451 1.54319 1.17636 1.16282 1.19583 1.09141 0.90026 1.18727 0.90124 1.25850 0.98238 0.97408 1.03840 1.70210 1.34498 1.15024 1.39063 0.85281 0.77479 0.79282 0.78897 1.18495 1.22292 1.22448 1.20648 0.91978 0.95784 0.86330 0.97073 1.21711 1.00797 0.94845 1.01089 1.22203 0.96974 0.94357 1.02300 1.20011 0.91964 0.95836 0.96516 1.20779 0.98933 0.93282 1.03271 0.90979 0.90870 0.85963 0.78851 0.79669 0.74883 0.91924 0.93644 0.99437 0.92788 0.94499 0.92551 0.94246 0.90383 0.89004 0.90357 0.90730 0.90538 0.90496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.82 113.37 1.11 1.18 16 2 O -0.32 -5.28 9.58 -92.67 -0.89 -6.17 16 3 C 0.07 1.30 6.68 22.56 0.15 1.46 16 4 C 0.05 0.76 10.21 84.83 0.87 1.62 16 5 N -0.47 -9.03 10.34 -194.38 -2.01 -11.04 16 6 C 0.11 2.02 10.69 85.03 0.91 2.93 16 7 C -0.16 -3.91 5.89 -20.00 -0.12 -4.03 16 8 C 0.56 16.25 7.69 86.79 0.67 16.92 16 9 O -0.56 -20.64 13.17 -3.86 -0.05 -20.69 16 10 N -0.70 -17.95 5.03 -445.28 -2.24 -20.19 16 11 C 0.16 5.37 2.41 45.02 0.11 5.48 16 12 H 0.06 2.33 7.58 -2.39 -0.02 2.31 16 13 C -0.13 -5.14 5.65 30.67 0.17 -4.97 16 14 C 0.18 9.13 5.30 86.36 0.46 9.59 16 15 N -0.60 -29.44 2.99 -675.23 -2.02 -31.46 16 16 C -0.24 -12.94 8.60 84.03 0.72 -12.22 16 17 H 0.08 4.05 6.20 -2.91 -0.02 4.03 16 18 C -0.06 -3.28 4.92 84.86 0.42 -2.87 16 19 N -0.94 -56.83 11.23 21.65 0.24 -56.59 16 20 Si 0.96 44.91 29.59 68.60 2.03 46.94 16 21 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 22 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 23 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 24 C 0.16 6.16 3.50 44.97 0.16 6.32 16 25 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 26 C -0.13 -4.28 7.94 71.98 0.57 -3.71 16 27 C -0.12 -3.52 4.84 30.67 0.15 -3.37 16 28 C -0.03 -0.83 5.97 -19.30 -0.12 -0.95 16 29 C -0.11 -2.71 8.70 71.24 0.62 -2.09 16 30 H 0.07 0.29 7.67 -2.39 -0.02 0.27 16 31 H 0.07 0.28 7.67 -2.39 -0.02 0.26 16 32 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.19 1.70 6.30 -2.91 -0.02 1.68 16 34 H 0.19 2.44 6.46 -2.91 -0.02 2.42 16 35 H 0.41 7.50 6.70 -92.70 -0.62 6.88 16 36 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 38 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 39 H 0.05 3.06 6.10 -2.39 -0.01 3.04 16 40 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 41 H 0.06 1.87 7.40 -2.39 -0.02 1.86 16 42 H 0.04 1.49 7.66 -2.38 -0.02 1.47 16 43 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 47 H 0.08 2.32 5.94 -2.39 -0.01 2.31 16 48 H 0.08 1.71 7.46 -2.39 -0.02 1.70 16 Total: -1.00 -72.96 376.78 2.28 -70.69 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.36 Total: 17.19 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 6.85 Total: 11.31 kcal Atomic # 7 Polarization: -113.24 SS G_CDS: -6.03 Total: -119.27 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.94 Total: -26.85 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -72.96 2.28 -70.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947444946.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.961 kcal (2) G-P(sol) polarization free energy of solvation -72.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds