Wall clock time and date at job start Tue Mar 31 2020 17:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35922 * 117.00029 * 2 1 4 4 C 1.38850 * 120.40899 * 359.97438 * 3 2 1 5 5 N 1.31876 * 121.00109 * 180.02562 * 4 3 2 6 6 C 1.31679 * 121.94147 * 359.76083 * 5 4 3 7 7 C 1.39523 * 120.69334 * 0.50047 * 6 5 4 8 8 C 1.47856 * 120.53230 * 179.76485 * 7 6 5 9 9 O 1.21552 * 119.99935 * 174.01251 * 8 7 6 10 10 N 1.34765 * 120.00022 * 354.01759 * 8 7 6 11 11 C 1.46508 * 120.00032 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.44522 * 324.96119 * 11 10 8 13 13 C 1.53038 * 109.45901 * 84.92925 * 11 10 8 14 14 C 1.53197 * 109.31107 * 58.66003 * 13 11 10 15 15 N 1.46919 * 108.77598 * 54.63280 * 14 13 11 16 16 C 1.36937 * 120.62722 * 126.41598 * 15 14 13 17 17 H 1.08005 * 120.00082 * 215.98430 * 16 15 14 18 18 C 1.38806 * 120.00444 * 35.98867 * 16 15 14 19 19 N 1.31620 * 119.99992 * 17.65182 * 18 16 15 20 20 Si 1.86799 * 120.00203 * 197.65697 * 18 16 15 21 21 H 1.48496 * 109.47122 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47305 * 119.99814 * 20 18 16 23 23 H 1.48505 * 109.47088 * 239.99896 * 20 18 16 24 24 C 1.46924 * 118.74160 * 306.38617 * 15 14 13 25 25 H 1.09003 * 109.58928 * 293.82817 * 24 15 14 26 26 C 1.52998 * 109.70483 * 173.46471 * 24 15 14 27 27 C 1.53035 * 109.45850 * 204.99982 * 11 10 8 28 28 C 1.38842 * 120.40463 * 179.97438 * 3 2 1 29 29 C 1.50705 * 120.87822 * 359.95325 * 28 3 2 30 30 H 1.08993 * 109.47592 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47278 * 300.00311 * 1 2 3 32 32 H 1.09004 * 109.46747 * 59.99901 * 1 2 3 33 33 H 1.08000 * 119.49438 * 0.02562 * 4 3 2 34 34 H 1.08008 * 119.65266 * 180.27002 * 6 5 4 35 35 H 0.97007 * 120.00231 * 359.97438 * 10 8 7 36 36 H 1.08990 * 109.49868 * 298.70644 * 13 11 10 37 37 H 1.09002 * 109.52279 * 178.62328 * 13 11 10 38 38 H 1.09006 * 109.58265 * 294.84344 * 14 13 11 39 39 H 1.08997 * 109.70231 * 174.49004 * 14 13 11 40 40 H 0.97004 * 120.00142 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.47592 * 300.64338 * 26 24 15 42 42 H 1.09005 * 109.46881 * 60.64521 * 26 24 15 43 43 H 1.09006 * 109.47388 * 180.63936 * 26 24 15 44 44 H 1.09002 * 109.49500 * 181.39493 * 27 11 10 45 45 H 1.08996 * 109.50187 * 61.29730 * 27 11 10 46 46 H 1.09000 * 109.47429 * 263.19279 * 29 28 3 47 47 H 1.08999 * 109.47051 * 23.19636 * 29 28 3 48 48 H 1.09006 * 109.46943 * 143.19145 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2981 2.3809 -0.0005 5 7 1.8847 3.5621 -0.0010 6 6 3.1953 3.6891 0.0036 7 6 4.0199 2.5636 -0.0012 8 6 5.4912 2.7103 -0.0012 9 8 6.1998 1.7284 0.1044 10 7 6.0464 3.9327 -0.1182 11 6 7.5043 4.0781 -0.1176 12 1 7.9423 3.3400 0.5542 13 6 8.0390 3.8588 -1.5347 14 6 7.3950 4.8758 -2.4823 15 7 7.6248 6.2269 -1.9529 16 6 8.1954 7.1951 -2.7354 17 1 8.8696 7.9160 -2.2970 18 6 7.9073 7.2501 -4.0921 19 7 6.8511 6.6241 -4.5665 20 14 9.0185 8.2123 -5.2448 21 1 10.1291 8.8202 -4.4687 22 1 9.5755 7.2977 -6.2736 23 1 8.2340 9.2846 -5.9082 24 6 7.2302 6.5198 -0.5683 25 1 6.1453 6.4645 -0.4780 26 6 7.7063 7.9215 -0.1817 27 6 7.8761 5.4844 0.3579 28 6 3.4320 1.2935 0.0005 29 6 4.2809 0.0483 0.0022 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 0.2197 2.3226 -0.0005 34 1 3.6367 4.6748 0.0074 35 1 5.4809 4.7163 -0.2028 36 1 7.7941 2.8491 -1.8637 37 1 9.1210 3.9909 -1.5402 38 1 6.3236 4.6864 -2.5480 39 1 7.8426 4.7903 -3.4724 40 1 6.6495 6.6628 -5.5146 41 1 8.7907 7.9762 -0.2774 42 1 7.2457 8.6566 -0.8417 43 1 7.4216 8.1304 0.8496 44 1 8.9595 5.6015 0.3350 45 1 7.5153 5.6316 1.3758 46 1 4.5858 -0.1823 1.0230 47 1 3.7052 -0.7844 -0.4020 48 1 5.1657 0.2109 -0.6133 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947444948.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:53 Heat of formation + Delta-G solvation = -16.043288 kcal Electronic energy + Delta-G solvation = -29688.010701 eV Core-core repulsion = 25744.005851 eV Total energy + Delta-G solvation = -3944.004850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.13408 -39.71065 -38.26739 -37.53418 -34.51619 -33.62518 -32.41588 -31.74944 -30.55921 -29.48695 -27.94478 -27.75044 -26.39239 -25.00604 -24.09459 -22.57750 -21.98598 -21.01431 -20.58621 -18.75393 -18.41541 -17.51364 -16.59616 -16.44024 -16.23115 -16.20350 -15.39489 -15.03623 -14.94905 -14.40727 -14.08949 -13.99295 -13.76897 -13.67348 -13.15035 -13.08358 -12.91235 -12.78919 -12.70771 -12.40811 -12.31507 -11.97577 -11.78510 -11.72430 -11.41394 -11.20636 -11.04666 -10.73642 -10.64366 -10.42245 -10.19433 -10.10544 -10.03138 -9.71747 -9.57654 -9.31711 -9.28709 -8.65785 -8.62293 -8.47582 -6.56583 -5.80552 -3.29986 0.52415 1.08141 2.78721 2.93701 3.35228 3.43591 3.44435 3.45694 3.74811 4.19099 4.33946 4.47244 4.61207 4.63778 4.79770 4.80852 5.03141 5.07639 5.18917 5.29956 5.33553 5.38536 5.47864 5.59360 5.63505 5.66962 5.77732 5.96093 6.03134 6.10277 6.12103 6.21622 6.30143 6.35048 6.42117 6.46211 6.56040 6.58307 6.72788 6.90953 6.92874 7.01263 7.07314 7.28339 7.55587 7.69377 7.75444 7.83933 8.38691 8.48393 9.19877 9.82199 10.43654 11.26652 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016493 B = 0.003063 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.329442 B = 9138.468957 C = 9558.627532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.307 6.307 3 C 0.062 3.938 4 C 0.038 3.962 5 N -0.456 5.456 6 C 0.106 3.894 7 C -0.150 4.150 8 C 0.562 3.438 9 O -0.534 6.534 10 N -0.704 5.704 11 C 0.156 3.844 12 H 0.076 0.924 13 C -0.153 4.153 14 C 0.179 3.821 15 N -0.584 5.584 16 C -0.258 4.258 17 H 0.065 0.935 18 C 0.012 3.988 19 N -0.894 5.894 20 Si 0.896 3.104 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.168 3.832 25 H 0.018 0.982 26 C -0.135 4.135 27 C -0.140 4.140 28 C -0.013 4.013 29 C -0.112 4.112 30 H 0.103 0.897 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.401 0.599 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.020 0.980 39 H 0.070 0.930 40 H 0.253 0.747 41 H 0.054 0.946 42 H 0.062 0.938 43 H 0.037 0.963 44 H 0.076 0.924 45 H 0.056 0.944 46 H 0.078 0.922 47 H 0.065 0.935 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.091 -10.315 11.416 18.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.219 6.219 3 C 0.015 3.985 4 C -0.119 4.119 5 N -0.165 5.165 6 C -0.053 4.053 7 C -0.155 4.155 8 C 0.348 3.652 9 O -0.413 6.413 10 N -0.356 5.356 11 C 0.052 3.948 12 H 0.094 0.906 13 C -0.193 4.193 14 C 0.053 3.947 15 N -0.307 5.307 16 C -0.387 4.387 17 H 0.083 0.917 18 C -0.188 4.188 19 N -0.536 5.536 20 Si 0.725 3.275 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.217 1.217 24 C 0.061 3.939 25 H 0.036 0.964 26 C -0.193 4.193 27 C -0.180 4.180 28 C -0.022 4.022 29 C -0.168 4.168 30 H 0.121 0.879 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.178 0.822 34 H 0.180 0.820 35 H 0.238 0.762 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.038 0.962 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.056 0.944 44 H 0.095 0.905 45 H 0.075 0.925 46 H 0.096 0.904 47 H 0.084 0.916 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.067 -10.453 11.310 18.399 hybrid contribution 0.303 0.308 -0.889 0.988 sum -9.764 -10.145 10.421 17.517 Atomic orbital electron populations 1.23132 0.78067 1.04387 1.01585 1.86086 1.21442 1.25600 1.88739 1.19751 0.92353 0.85988 1.00453 1.23058 1.00633 0.87132 1.01053 1.67535 1.11941 1.25880 1.11112 1.22899 0.88683 0.98304 0.95445 1.20809 0.95184 0.93676 1.05809 1.17844 0.86471 0.83813 0.77036 1.90706 1.63030 1.37336 1.50251 1.46096 1.08802 1.08068 1.72598 1.20928 0.78408 0.97471 0.98008 0.90640 1.22543 1.00858 1.00203 0.95730 1.20596 0.96547 0.82272 0.95284 1.44049 1.71346 1.07267 1.08063 1.19058 1.19898 1.09992 0.89783 0.91714 1.25222 0.96016 0.98815 0.98773 1.70058 1.24438 1.46079 1.13064 0.86347 0.80537 0.79435 0.81146 1.20154 1.21587 1.21743 1.20400 0.94722 0.92364 0.86403 0.96419 1.21774 1.01484 0.97393 0.98617 1.22385 1.02208 0.94634 0.98727 1.19830 0.90716 0.95943 0.95687 1.20900 0.99578 0.92434 1.03843 0.87857 0.92420 0.92328 0.82231 0.82041 0.76197 0.92721 0.91604 0.96192 0.91126 0.93749 0.92738 0.91870 0.94382 0.90520 0.92502 0.90359 0.91618 0.88230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.82 101.05 0.99 1.13 16 2 O -0.31 -3.20 9.56 -19.49 -0.19 -3.39 16 3 C 0.06 0.76 6.68 -39.13 -0.26 0.49 16 4 C 0.04 0.45 10.21 -17.31 -0.18 0.27 16 5 N -0.46 -6.24 10.34 -12.80 -0.13 -6.37 16 6 C 0.11 1.46 10.69 -17.14 -0.18 1.28 16 7 C -0.15 -2.18 5.89 -104.84 -0.62 -2.80 16 8 C 0.56 9.04 7.69 -12.33 -0.09 8.94 16 9 O -0.53 -9.57 13.17 5.32 0.07 -9.50 16 10 N -0.70 -11.03 4.22 -54.71 -0.23 -11.26 16 11 C 0.16 2.57 2.78 -67.89 -0.19 2.39 16 12 H 0.08 1.24 7.58 -51.93 -0.39 0.84 16 13 C -0.15 -2.91 5.77 -26.61 -0.15 -3.06 16 14 C 0.18 4.08 5.04 -3.71 -0.02 4.06 16 15 N -0.58 -13.53 2.94 -164.77 -0.48 -14.02 16 16 C -0.26 -6.66 8.35 -15.06 -0.13 -6.79 16 17 H 0.07 1.66 6.47 -52.48 -0.34 1.32 16 18 C 0.01 0.32 4.84 -17.43 -0.08 0.24 16 19 N -0.89 -25.39 11.86 55.49 0.66 -24.73 16 20 Si 0.90 21.22 29.59 -169.99 -5.03 16.19 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 C 0.17 3.18 3.19 -67.60 -0.22 2.96 16 25 H 0.02 0.35 6.64 -51.93 -0.34 0.00 16 26 C -0.14 -2.40 8.01 37.16 0.30 -2.10 16 27 C -0.14 -2.23 5.07 -26.61 -0.13 -2.37 16 28 C -0.01 -0.18 5.97 -103.75 -0.62 -0.79 16 29 C -0.11 -1.46 8.69 36.01 0.31 -1.15 16 30 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.28 7.68 -51.93 -0.40 -0.12 16 32 H 0.06 0.31 7.67 -51.93 -0.40 -0.09 16 33 H 0.16 1.33 6.30 -52.49 -0.33 1.00 16 34 H 0.16 1.99 6.46 -52.48 -0.34 1.65 16 35 H 0.40 6.00 4.96 -40.82 -0.20 5.80 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.02 0.48 7.74 -51.93 -0.40 0.08 16 39 H 0.07 1.84 6.69 -51.93 -0.35 1.49 16 40 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.05 0.98 7.38 -51.93 -0.38 0.60 16 42 H 0.06 1.23 7.71 -51.93 -0.40 0.83 16 43 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.06 0.77 7.43 -51.93 -0.39 0.38 16 48 H 0.10 1.48 5.98 -51.93 -0.31 1.17 16 LS Contribution 373.70 15.07 5.63 5.63 Total: -1.00 -30.86 373.70 -8.05 -38.91 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -7.07 Total: 5.83 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -1.27 Total: 2.71 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.19 Total: -56.38 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.12 Total: -12.89 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.86 -8.05 -38.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947444948.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.866 kcal (2) G-P(sol) polarization free energy of solvation -30.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds