Wall clock time and date at job start Tue Mar 31 2020 17:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35922 * 117.00029 * 2 1 4 4 C 1.38850 * 120.40899 * 359.97438 * 3 2 1 5 5 N 1.31876 * 121.00109 * 180.02562 * 4 3 2 6 6 C 1.31679 * 121.94147 * 359.76083 * 5 4 3 7 7 C 1.39523 * 120.69334 * 0.50047 * 6 5 4 8 8 C 1.47856 * 120.53230 * 179.76485 * 7 6 5 9 9 O 1.21552 * 119.99935 * 174.01251 * 8 7 6 10 10 N 1.34765 * 120.00022 * 354.01759 * 8 7 6 11 11 C 1.46508 * 120.00032 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.44522 * 324.96119 * 11 10 8 13 13 C 1.53038 * 109.45901 * 84.92925 * 11 10 8 14 14 C 1.53197 * 109.31107 * 58.66003 * 13 11 10 15 15 N 1.46919 * 108.77598 * 54.63280 * 14 13 11 16 16 C 1.36937 * 120.62722 * 126.41598 * 15 14 13 17 17 H 1.08005 * 120.00082 * 215.98430 * 16 15 14 18 18 C 1.38806 * 120.00444 * 35.98867 * 16 15 14 19 19 N 1.31620 * 119.99992 * 17.65182 * 18 16 15 20 20 Si 1.86799 * 120.00203 * 197.65697 * 18 16 15 21 21 H 1.48496 * 109.47122 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47305 * 119.99814 * 20 18 16 23 23 H 1.48505 * 109.47088 * 239.99896 * 20 18 16 24 24 C 1.46924 * 118.74160 * 306.38617 * 15 14 13 25 25 H 1.09003 * 109.58928 * 293.82817 * 24 15 14 26 26 C 1.52998 * 109.70483 * 173.46471 * 24 15 14 27 27 C 1.53035 * 109.45850 * 204.99982 * 11 10 8 28 28 C 1.38842 * 120.40463 * 179.97438 * 3 2 1 29 29 C 1.50705 * 120.87822 * 359.95325 * 28 3 2 30 30 H 1.08993 * 109.47592 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47278 * 300.00311 * 1 2 3 32 32 H 1.09004 * 109.46747 * 59.99901 * 1 2 3 33 33 H 1.08000 * 119.49438 * 0.02562 * 4 3 2 34 34 H 1.08008 * 119.65266 * 180.27002 * 6 5 4 35 35 H 0.97007 * 120.00231 * 359.97438 * 10 8 7 36 36 H 1.08990 * 109.49868 * 298.70644 * 13 11 10 37 37 H 1.09002 * 109.52279 * 178.62328 * 13 11 10 38 38 H 1.09006 * 109.58265 * 294.84344 * 14 13 11 39 39 H 1.08997 * 109.70231 * 174.49004 * 14 13 11 40 40 H 0.97004 * 120.00142 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.47592 * 300.64338 * 26 24 15 42 42 H 1.09005 * 109.46881 * 60.64521 * 26 24 15 43 43 H 1.09006 * 109.47388 * 180.63936 * 26 24 15 44 44 H 1.09002 * 109.49500 * 181.39493 * 27 11 10 45 45 H 1.08996 * 109.50187 * 61.29730 * 27 11 10 46 46 H 1.09000 * 109.47429 * 263.19279 * 29 28 3 47 47 H 1.08999 * 109.47051 * 23.19636 * 29 28 3 48 48 H 1.09006 * 109.46943 * 143.19145 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2981 2.3809 -0.0005 5 7 1.8847 3.5621 -0.0010 6 6 3.1953 3.6891 0.0036 7 6 4.0199 2.5636 -0.0012 8 6 5.4912 2.7103 -0.0012 9 8 6.1998 1.7284 0.1044 10 7 6.0464 3.9327 -0.1182 11 6 7.5043 4.0781 -0.1176 12 1 7.9423 3.3400 0.5542 13 6 8.0390 3.8588 -1.5347 14 6 7.3950 4.8758 -2.4823 15 7 7.6248 6.2269 -1.9529 16 6 8.1954 7.1951 -2.7354 17 1 8.8696 7.9160 -2.2970 18 6 7.9073 7.2501 -4.0921 19 7 6.8511 6.6241 -4.5665 20 14 9.0185 8.2123 -5.2448 21 1 10.1291 8.8202 -4.4687 22 1 9.5755 7.2977 -6.2736 23 1 8.2340 9.2846 -5.9082 24 6 7.2302 6.5198 -0.5683 25 1 6.1453 6.4645 -0.4780 26 6 7.7063 7.9215 -0.1817 27 6 7.8761 5.4844 0.3579 28 6 3.4320 1.2935 0.0005 29 6 4.2809 0.0483 0.0022 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 0.2197 2.3226 -0.0005 34 1 3.6367 4.6748 0.0074 35 1 5.4809 4.7163 -0.2028 36 1 7.7941 2.8491 -1.8637 37 1 9.1210 3.9909 -1.5402 38 1 6.3236 4.6864 -2.5480 39 1 7.8426 4.7903 -3.4724 40 1 6.6495 6.6628 -5.5146 41 1 8.7907 7.9762 -0.2774 42 1 7.2457 8.6566 -0.8417 43 1 7.4216 8.1304 0.8496 44 1 8.9595 5.6015 0.3350 45 1 7.5153 5.6316 1.3758 46 1 4.5858 -0.1823 1.0230 47 1 3.7052 -0.7844 -0.4020 48 1 5.1657 0.2109 -0.6133 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947444948.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:51 Heat of formation + Delta-G solvation = -35.447756 kcal Electronic energy + Delta-G solvation = -29688.852142 eV Core-core repulsion = 25744.005851 eV Total energy + Delta-G solvation = -3944.846291 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.15187 -40.92133 -39.39345 -38.78619 -36.02216 -34.70473 -34.10749 -33.16684 -32.01893 -30.89047 -28.87497 -28.47850 -27.92618 -26.78012 -25.18063 -23.89316 -23.37376 -22.31755 -22.01399 -20.26915 -19.44163 -18.53146 -18.18088 -17.45798 -17.36677 -17.06867 -16.98926 -16.50034 -16.22621 -15.76604 -15.56203 -15.22810 -15.17442 -14.88183 -14.64916 -14.28286 -14.21702 -13.91912 -13.81621 -13.74455 -13.33420 -13.23020 -13.04438 -12.87207 -12.73464 -12.64744 -12.49632 -12.36546 -12.29474 -12.15355 -11.98156 -11.68217 -11.39843 -11.14672 -10.96486 -10.66418 -10.51389 -10.42167 -9.99543 -9.53360 -8.50107 -7.82134 -5.33462 -0.50795 0.08133 1.45050 1.48942 1.57570 1.74899 1.93278 2.35039 2.53062 2.68464 3.25930 3.32026 3.41672 3.61054 3.63349 3.67554 3.90590 4.04887 4.10516 4.12147 4.22273 4.36589 4.40770 4.45269 4.53649 4.62415 4.64550 4.69178 4.74510 4.77365 4.80329 4.95223 4.99636 5.04398 5.06528 5.13669 5.16009 5.20015 5.39257 5.41060 5.51495 5.57473 5.60267 5.73609 5.77594 6.13248 6.48092 6.49387 6.71549 7.13447 7.21347 7.91728 8.47525 9.22253 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016493 B = 0.003063 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.329442 B = 9138.468957 C = 9558.627532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.317 6.317 3 C 0.068 3.932 4 C 0.044 3.956 5 N -0.471 5.471 6 C 0.099 3.901 7 C -0.163 4.163 8 C 0.563 3.437 9 O -0.556 6.556 10 N -0.701 5.701 11 C 0.161 3.839 12 H 0.086 0.914 13 C -0.141 4.141 14 C 0.192 3.808 15 N -0.598 5.598 16 C -0.251 4.251 17 H 0.069 0.931 18 C -0.044 4.044 19 N -0.930 5.930 20 Si 0.953 3.047 21 H -0.264 1.264 22 H -0.297 1.297 23 H -0.295 1.295 24 C 0.159 3.841 25 H 0.021 0.979 26 C -0.129 4.129 27 C -0.126 4.126 28 C -0.032 4.032 29 C -0.103 4.103 30 H 0.125 0.875 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.195 0.805 34 H 0.170 0.830 35 H 0.405 0.595 36 H 0.048 0.952 37 H 0.067 0.933 38 H -0.001 1.001 39 H 0.030 0.970 40 H 0.245 0.755 41 H 0.049 0.951 42 H 0.038 0.962 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.091 0.909 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.009 -10.425 13.457 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.229 6.229 3 C 0.020 3.980 4 C -0.113 4.113 5 N -0.180 5.180 6 C -0.059 4.059 7 C -0.168 4.168 8 C 0.350 3.650 9 O -0.437 6.437 10 N -0.353 5.353 11 C 0.057 3.943 12 H 0.104 0.896 13 C -0.181 4.181 14 C 0.066 3.934 15 N -0.323 5.323 16 C -0.381 4.381 17 H 0.087 0.913 18 C -0.240 4.240 19 N -0.575 5.575 20 Si 0.782 3.218 21 H -0.188 1.188 22 H -0.224 1.224 23 H -0.222 1.222 24 C 0.054 3.946 25 H 0.039 0.961 26 C -0.186 4.186 27 C -0.165 4.165 28 C -0.041 4.041 29 C -0.159 4.159 30 H 0.143 0.857 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.212 0.788 34 H 0.187 0.813 35 H 0.242 0.758 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.017 0.983 39 H 0.048 0.952 40 H 0.054 0.946 41 H 0.068 0.932 42 H 0.057 0.943 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.109 0.891 46 H 0.098 0.902 47 H 0.095 0.905 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.981 -10.549 13.388 20.276 hybrid contribution 0.456 0.258 -1.474 1.565 sum -10.525 -10.291 11.913 18.937 Atomic orbital electron populations 1.23515 0.75587 1.06380 1.02829 1.86088 1.23952 1.24631 1.88265 1.19737 0.91818 0.86971 0.99433 1.23596 1.02173 0.86286 0.99272 1.67588 1.11758 1.26960 1.11701 1.23000 0.88925 0.98403 0.95598 1.20699 0.94209 0.94472 1.07453 1.18092 0.87177 0.83447 0.76307 1.90694 1.63738 1.37937 1.51309 1.46038 1.08465 1.08254 1.72516 1.20837 0.78924 0.98380 0.96144 0.89629 1.22362 1.00651 0.98408 0.96658 1.20292 0.95132 0.83610 0.94400 1.44273 1.71541 1.06859 1.09584 1.19358 1.19044 1.09585 0.90127 0.91310 1.25889 0.97297 1.00472 1.00356 1.70192 1.26299 1.48372 1.12657 0.85426 0.79172 0.77920 0.79240 1.18820 1.22374 1.22206 1.20667 0.95223 0.94286 0.84451 0.96143 1.21713 1.00876 0.95694 1.00347 1.22254 1.02132 0.92626 0.99491 1.20018 0.91923 0.95784 0.96385 1.20780 0.98804 0.92774 1.03529 0.85684 0.90859 0.91289 0.78831 0.81338 0.75781 0.93354 0.91435 0.98287 0.95166 0.94551 0.93193 0.94300 0.90552 0.90277 0.89092 0.90200 0.90454 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.82 113.37 1.11 1.21 16 2 O -0.32 -5.92 9.56 -92.67 -0.89 -6.81 16 3 C 0.07 1.56 6.68 22.56 0.15 1.71 16 4 C 0.04 0.93 10.21 84.83 0.87 1.80 16 5 N -0.47 -12.24 10.34 -194.40 -2.01 -14.25 16 6 C 0.10 2.68 10.69 85.03 0.91 3.59 16 7 C -0.16 -4.73 5.89 -20.01 -0.12 -4.84 16 8 C 0.56 18.05 7.69 86.79 0.67 18.72 16 9 O -0.56 -20.03 13.17 -3.88 -0.05 -20.09 16 10 N -0.70 -21.54 4.22 -445.28 -1.88 -23.42 16 11 C 0.16 5.13 2.78 45.01 0.13 5.25 16 12 H 0.09 2.64 7.58 -2.39 -0.02 2.62 16 13 C -0.14 -5.37 5.77 30.67 0.18 -5.20 16 14 C 0.19 9.01 5.04 86.37 0.43 9.45 16 15 N -0.60 -27.88 2.94 -675.22 -1.98 -29.86 16 16 C -0.25 -13.04 8.35 84.03 0.70 -12.34 16 17 H 0.07 3.48 6.47 -2.91 -0.02 3.47 16 18 C -0.04 -2.41 4.84 84.86 0.41 -1.99 16 19 N -0.93 -54.72 11.86 21.65 0.26 -54.46 16 20 Si 0.95 44.48 29.59 68.60 2.03 46.51 16 21 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 22 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 23 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 24 C 0.16 5.79 3.19 44.98 0.14 5.94 16 25 H 0.02 0.76 6.64 -2.39 -0.02 0.75 16 26 C -0.13 -4.29 8.01 71.98 0.58 -3.72 16 27 C -0.13 -3.68 5.07 30.67 0.16 -3.53 16 28 C -0.03 -0.87 5.97 -19.30 -0.12 -0.99 16 29 C -0.10 -2.68 8.69 71.24 0.62 -2.06 16 30 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.45 7.68 -2.39 -0.02 0.43 16 32 H 0.07 0.50 7.67 -2.38 -0.02 0.48 16 33 H 0.20 2.57 6.30 -2.91 -0.02 2.55 16 34 H 0.17 4.09 6.46 -2.91 -0.02 4.07 16 35 H 0.40 11.85 4.96 -92.70 -0.46 11.39 16 36 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.00 -0.05 7.74 -2.38 -0.02 -0.07 16 39 H 0.03 1.64 6.69 -2.39 -0.02 1.62 16 40 H 0.25 14.17 8.31 -92.70 -0.77 13.40 16 41 H 0.05 1.69 7.38 -2.39 -0.02 1.68 16 42 H 0.04 1.46 7.71 -2.38 -0.02 1.45 16 43 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 44 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.08 1.77 7.43 -2.39 -0.02 1.75 16 48 H 0.08 2.39 5.98 -2.38 -0.01 2.37 16 Total: -1.00 -68.34 373.70 2.82 -65.52 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.52 Total: 23.86 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 6.82 Total: 13.00 kcal Atomic # 7 Polarization: -116.38 SS G_CDS: -5.62 Total: -121.99 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.94 Total: -26.90 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -68.34 2.82 -65.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947444948.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.076 kcal (2) G-P(sol) polarization free energy of solvation -68.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds