Wall clock time and date at job start Tue Mar 31 2020 17:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38351 * 119.40455 * 2 1 4 4 C 1.38345 * 119.45481 * 179.67656 * 3 2 1 5 5 C 1.50703 * 120.82512 * 180.31862 * 4 3 2 6 6 C 1.39982 * 118.34739 * 0.60420 * 4 3 2 7 7 C 1.47528 * 120.59625 * 179.71130 * 6 4 3 8 8 O 1.21590 * 120.00241 * 269.72466 * 7 6 4 9 9 N 1.34776 * 119.99761 * 89.44905 * 7 6 4 10 10 C 1.46502 * 120.00094 * 180.27333 * 9 7 6 11 11 H 1.08997 * 109.45790 * 325.03181 * 10 9 7 12 12 C 1.53041 * 109.45835 * 84.99783 * 10 9 7 13 13 C 1.53194 * 109.31107 * 58.66007 * 12 10 9 14 14 N 1.46923 * 108.77574 * 54.62973 * 13 12 10 15 15 C 1.36943 * 120.62655 * 126.41454 * 14 13 12 16 16 H 1.08002 * 120.00121 * 209.01747 * 15 14 13 17 17 C 1.38814 * 120.00022 * 29.02186 * 15 14 13 18 18 N 1.31612 * 120.00002 * 15.01156 * 17 15 14 19 19 Si 1.86805 * 119.99770 * 195.01100 * 17 15 14 20 20 H 1.48506 * 109.46896 * 59.99911 * 19 17 15 21 21 H 1.48497 * 109.47178 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47030 * 299.99894 * 19 17 15 23 23 C 1.46918 * 118.74214 * 306.39309 * 14 13 12 24 24 H 1.09000 * 109.59018 * 293.82249 * 23 14 13 25 25 C 1.53003 * 109.58801 * 173.39599 * 23 14 13 26 26 C 1.53034 * 109.46339 * 205.07065 * 10 9 7 27 27 C 1.40281 * 118.80520 * 359.44042 * 6 4 3 28 28 O 1.35433 * 119.79651 * 180.27226 * 27 6 4 29 29 N 1.31872 * 119.40749 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.46822 * 269.97838 * 1 2 3 31 31 H 1.09005 * 109.46890 * 29.97705 * 1 2 3 32 32 H 1.08996 * 109.46903 * 149.97826 * 1 2 3 33 33 H 1.07997 * 120.27583 * 0.02621 * 3 2 1 34 34 H 1.09000 * 109.47090 * 270.29649 * 5 4 3 35 35 H 1.09008 * 109.47120 * 30.29513 * 5 4 3 36 36 H 1.09002 * 109.47131 * 150.29269 * 5 4 3 37 37 H 0.97007 * 120.00042 * 0.27335 * 9 7 6 38 38 H 1.09002 * 109.49932 * 178.60843 * 12 10 9 39 39 H 1.08994 * 109.50140 * 298.67635 * 12 10 9 40 40 H 1.08997 * 109.59235 * 174.42486 * 13 12 10 41 41 H 1.09005 * 109.58633 * 294.70320 * 13 12 10 42 42 H 0.97006 * 119.99730 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.47113 * 59.99998 * 25 23 14 44 44 H 1.09006 * 109.47046 * 180.02562 * 25 23 14 45 45 H 1.09007 * 109.46793 * 300.00057 * 25 23 14 46 46 H 1.08993 * 109.50129 * 61.29238 * 26 10 9 47 47 H 1.09001 * 109.49947 * 181.39675 * 26 10 9 48 48 H 0.96696 * 113.99772 * 90.00609 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5698 1.2065 0.0068 5 6 4.3408 2.5013 0.0142 6 6 4.2355 -0.0248 0.0005 7 6 5.7097 -0.0814 0.0009 8 8 6.3176 -0.1041 -1.0519 9 7 6.3830 -0.1023 1.1683 10 6 7.8471 -0.1524 1.1688 11 1 8.1901 -0.7550 0.3278 12 6 8.4058 1.2666 1.0404 13 6 7.8941 2.1198 2.2054 14 7 8.2339 1.4493 3.4677 15 6 8.9204 2.1145 4.4483 16 1 9.5606 1.5680 5.1250 17 6 8.7933 3.4912 4.5725 18 7 7.8104 4.1191 3.9627 19 14 10.0175 4.4527 5.6053 20 1 11.3839 4.2667 5.0542 21 1 9.6646 5.8948 5.5764 22 1 9.9775 3.9608 7.0059 23 6 7.8229 0.0517 3.6582 24 1 6.7353 -0.0068 3.7012 25 6 8.4202 -0.4857 4.9603 26 6 8.3355 -0.7784 2.4770 27 6 3.4757 -1.2041 -0.0004 28 8 4.0992 -2.4064 -0.0009 29 7 2.1546 -1.1488 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6411 2.1375 0.0004 34 1 4.5272 2.8191 -1.0117 35 1 3.7618 3.2661 0.5319 36 1 5.2911 2.3554 0.5278 37 1 5.8980 -0.0841 2.0083 38 1 9.4950 1.2325 1.0656 39 1 8.0772 1.7032 0.0974 40 1 8.3664 3.1017 2.1744 41 1 6.8126 2.2322 2.1285 42 1 7.7219 5.0812 4.0493 43 1 8.0643 0.1139 5.7980 44 1 8.1145 -1.5228 5.0994 45 1 9.5078 -0.4314 4.9107 46 1 7.9563 -1.7972 2.5566 47 1 9.4253 -0.7933 2.4886 48 1 4.2799 -2.7560 0.8824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947594533.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:38 Heat of formation + Delta-G solvation = -27.229414 kcal Electronic energy + Delta-G solvation = -30179.041856 eV Core-core repulsion = 26234.551939 eV Total energy + Delta-G solvation = -3944.489917 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.01995 -39.43750 -37.62776 -37.45156 -34.32542 -34.26828 -32.39334 -31.96592 -31.23635 -29.76507 -28.28336 -27.60467 -26.42758 -25.03528 -23.63088 -22.29717 -21.82449 -20.84574 -20.52405 -18.70551 -18.53175 -17.77531 -17.22556 -16.47385 -15.89112 -15.43282 -15.17183 -14.77092 -14.52967 -14.22503 -13.98815 -13.82829 -13.72244 -13.34998 -13.19414 -13.11493 -13.06606 -12.72636 -12.53716 -12.46177 -12.09413 -11.95653 -11.87268 -11.70729 -11.49036 -11.25913 -11.04234 -10.73863 -10.68038 -10.47540 -10.22520 -10.14156 -10.09489 -9.74031 -9.61704 -9.42398 -9.35462 -8.90796 -8.67892 -8.50334 -6.69505 -5.83196 -3.27063 0.67739 0.99532 2.73438 3.15997 3.34220 3.40569 3.41604 3.45400 3.49546 4.34206 4.43958 4.44571 4.77795 4.87654 5.09020 5.17207 5.26173 5.27911 5.31163 5.34709 5.35327 5.50107 5.56858 5.60248 5.62540 5.69908 5.79110 5.94177 6.03511 6.04168 6.10701 6.18377 6.25496 6.30988 6.35676 6.39513 6.51603 6.57004 6.70157 6.89284 6.95628 6.99213 7.29138 7.32536 7.62417 7.71175 7.75166 7.76889 8.40299 8.40843 9.16822 9.80114 10.36238 11.24941 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014934 B = 0.003586 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.407303 B = 7805.719296 C = 8513.169389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.164 3.836 3 C -0.187 4.187 4 C 0.018 3.982 5 C -0.128 4.128 6 C -0.198 4.198 7 C 0.575 3.425 8 O -0.532 6.532 9 N -0.705 5.705 10 C 0.153 3.847 11 H 0.074 0.926 12 C -0.155 4.155 13 C 0.176 3.824 14 N -0.586 5.586 15 C -0.252 4.252 16 H 0.069 0.931 17 C 0.004 3.996 18 N -0.903 5.903 19 Si 0.900 3.100 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.283 1.283 23 C 0.169 3.831 24 H 0.018 0.982 25 C -0.137 4.137 26 C -0.139 4.139 27 C 0.351 3.649 28 O -0.474 6.474 29 N -0.509 5.509 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.144 0.856 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.401 0.599 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.087 0.913 41 H 0.017 0.983 42 H 0.253 0.747 43 H 0.062 0.938 44 H 0.038 0.962 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.076 0.924 48 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.002 -7.403 -4.982 14.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.026 3.974 3 C -0.206 4.206 4 C 0.010 3.990 5 C -0.185 4.185 6 C -0.205 4.205 7 C 0.358 3.642 8 O -0.409 6.409 9 N -0.356 5.356 10 C 0.049 3.951 11 H 0.092 0.908 12 C -0.195 4.195 13 C 0.050 3.950 14 N -0.310 5.310 15 C -0.381 4.381 16 H 0.087 0.913 17 C -0.194 4.194 18 N -0.548 5.548 19 Si 0.730 3.270 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.209 1.209 23 C 0.062 3.938 24 H 0.036 0.964 25 C -0.195 4.195 26 C -0.178 4.178 27 C 0.171 3.829 28 O -0.281 6.281 29 N -0.229 5.229 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.162 0.838 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.236 0.764 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.105 0.895 41 H 0.035 0.965 42 H 0.063 0.937 43 H 0.081 0.919 44 H 0.057 0.943 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.095 0.905 48 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -11.003 -7.989 -6.306 14.989 hybrid contribution 0.887 1.210 1.365 2.028 sum -10.116 -6.779 -4.941 13.142 Atomic orbital electron populations 1.20783 0.88238 1.03763 1.03468 1.21136 0.96889 0.87097 0.92277 1.21803 0.93718 0.99603 1.05516 1.20354 0.93632 0.94424 0.90573 1.21016 1.00984 0.92825 1.03643 1.20919 0.95344 0.94038 1.10192 1.17714 0.85767 0.76249 0.84422 1.90787 1.69127 1.49572 1.31384 1.46182 1.08037 1.73517 1.07862 1.20942 0.78111 0.97860 0.98144 0.90781 1.22578 1.00717 0.95655 1.00562 1.20728 0.96672 0.95716 0.81872 1.44117 1.65208 1.07402 1.14228 1.19132 1.18926 0.89884 1.10181 0.91311 1.25053 0.97203 0.97868 0.99290 1.69990 1.29721 1.08431 1.46618 0.86408 0.81273 0.79080 0.80205 1.21068 1.21696 1.20950 1.20377 0.94969 0.86388 0.92100 0.96439 1.21806 1.01147 0.98219 0.98288 1.22369 1.01861 0.98200 0.95394 1.18955 0.86368 0.84350 0.93220 1.84747 1.76722 1.32763 1.33861 1.66999 1.09102 1.30442 1.16343 0.89919 0.90265 0.90254 0.83803 0.89742 0.89962 0.89708 0.76384 0.91675 0.92817 0.89487 0.96481 0.93670 0.91923 0.94317 0.92647 0.92562 0.90544 0.73971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.16 36.01 0.37 -0.43 16 2 C 0.16 1.87 6.78 -82.53 -0.56 1.31 16 3 C -0.19 -2.07 9.41 -39.50 -0.37 -2.44 16 4 C 0.02 0.24 5.95 -103.93 -0.62 -0.38 16 5 C -0.13 -1.67 9.69 36.01 0.35 -1.32 16 6 C -0.20 -2.98 5.66 -104.69 -0.59 -3.57 16 7 C 0.57 9.66 5.39 -12.47 -0.07 9.59 16 8 O -0.53 -10.82 16.77 5.29 0.09 -10.73 16 9 N -0.70 -11.04 4.26 -54.81 -0.23 -11.28 16 10 C 0.15 2.56 2.78 -67.89 -0.19 2.37 16 11 H 0.07 1.27 7.57 -51.93 -0.39 0.88 16 12 C -0.15 -2.95 5.77 -26.61 -0.15 -3.10 16 13 C 0.18 3.91 5.03 -3.71 -0.02 3.89 16 14 N -0.59 -13.30 2.99 -164.77 -0.49 -13.80 16 15 C -0.25 -6.38 8.60 -15.06 -0.13 -6.51 16 16 H 0.07 1.71 6.21 -52.49 -0.33 1.38 16 17 C 0.00 0.12 4.96 -17.43 -0.09 0.03 16 18 N -0.90 -24.79 11.14 55.49 0.62 -24.17 16 19 Si 0.90 20.90 29.58 -169.99 -5.03 15.88 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C 0.17 3.11 3.20 -67.60 -0.22 2.90 16 24 H 0.02 0.33 6.64 -51.93 -0.34 -0.01 16 25 C -0.14 -2.36 7.94 37.16 0.30 -2.06 16 26 C -0.14 -2.19 5.07 -26.61 -0.13 -2.33 16 27 C 0.35 5.08 7.77 -16.61 -0.13 4.95 16 28 O -0.47 -6.32 13.01 -17.99 -0.23 -6.56 16 29 N -0.51 -7.01 10.28 -9.21 -0.09 -7.11 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.44 8.07 -51.93 -0.42 0.02 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.08 0.91 8.10 -51.92 -0.42 0.49 16 36 H 0.08 1.32 6.48 -51.93 -0.34 0.98 16 37 H 0.40 5.99 6.85 -40.82 -0.28 5.71 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.09 2.23 6.06 -51.93 -0.31 1.92 16 41 H 0.02 0.39 7.03 -51.93 -0.37 0.03 16 42 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 43 H 0.06 1.18 7.62 -51.93 -0.40 0.78 16 44 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.05 0.97 7.45 -51.93 -0.39 0.59 16 46 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 48 H 0.40 3.38 9.06 45.56 0.41 3.79 16 LS Contribution 382.16 15.07 5.76 5.76 Total: -1.00 -32.07 382.16 -8.38 -40.45 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -6.51 Total: 8.66 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -2.26 Total: 2.90 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -0.20 Total: -56.35 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.15 Total: -17.29 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.07 -8.38 -40.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947594533.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.219 kcal (2) G-P(sol) polarization free energy of solvation -32.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds