Wall clock time and date at job start Tue Mar 31 2020 17:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38351 * 119.40455 * 2 1 4 4 C 1.38345 * 119.45481 * 179.67656 * 3 2 1 5 5 C 1.50703 * 120.82512 * 180.31862 * 4 3 2 6 6 C 1.39982 * 118.34739 * 0.60420 * 4 3 2 7 7 C 1.47528 * 120.59625 * 179.71130 * 6 4 3 8 8 O 1.21590 * 120.00241 * 269.72466 * 7 6 4 9 9 N 1.34776 * 119.99761 * 89.44905 * 7 6 4 10 10 C 1.46502 * 120.00094 * 180.27333 * 9 7 6 11 11 H 1.08997 * 109.45790 * 325.03181 * 10 9 7 12 12 C 1.53041 * 109.45835 * 84.99783 * 10 9 7 13 13 C 1.53194 * 109.31107 * 58.66007 * 12 10 9 14 14 N 1.46923 * 108.77574 * 54.62973 * 13 12 10 15 15 C 1.36943 * 120.62655 * 126.41454 * 14 13 12 16 16 H 1.08002 * 120.00121 * 209.01747 * 15 14 13 17 17 C 1.38814 * 120.00022 * 29.02186 * 15 14 13 18 18 N 1.31612 * 120.00002 * 15.01156 * 17 15 14 19 19 Si 1.86805 * 119.99770 * 195.01100 * 17 15 14 20 20 H 1.48506 * 109.46896 * 59.99911 * 19 17 15 21 21 H 1.48497 * 109.47178 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47030 * 299.99894 * 19 17 15 23 23 C 1.46918 * 118.74214 * 306.39309 * 14 13 12 24 24 H 1.09000 * 109.59018 * 293.82249 * 23 14 13 25 25 C 1.53003 * 109.58801 * 173.39599 * 23 14 13 26 26 C 1.53034 * 109.46339 * 205.07065 * 10 9 7 27 27 C 1.40281 * 118.80520 * 359.44042 * 6 4 3 28 28 O 1.35433 * 119.79651 * 180.27226 * 27 6 4 29 29 N 1.31872 * 119.40749 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.46822 * 269.97838 * 1 2 3 31 31 H 1.09005 * 109.46890 * 29.97705 * 1 2 3 32 32 H 1.08996 * 109.46903 * 149.97826 * 1 2 3 33 33 H 1.07997 * 120.27583 * 0.02621 * 3 2 1 34 34 H 1.09000 * 109.47090 * 270.29649 * 5 4 3 35 35 H 1.09008 * 109.47120 * 30.29513 * 5 4 3 36 36 H 1.09002 * 109.47131 * 150.29269 * 5 4 3 37 37 H 0.97007 * 120.00042 * 0.27335 * 9 7 6 38 38 H 1.09002 * 109.49932 * 178.60843 * 12 10 9 39 39 H 1.08994 * 109.50140 * 298.67635 * 12 10 9 40 40 H 1.08997 * 109.59235 * 174.42486 * 13 12 10 41 41 H 1.09005 * 109.58633 * 294.70320 * 13 12 10 42 42 H 0.97006 * 119.99730 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.47113 * 59.99998 * 25 23 14 44 44 H 1.09006 * 109.47046 * 180.02562 * 25 23 14 45 45 H 1.09007 * 109.46793 * 300.00057 * 25 23 14 46 46 H 1.08993 * 109.50129 * 61.29238 * 26 10 9 47 47 H 1.09001 * 109.49947 * 181.39675 * 26 10 9 48 48 H 0.96696 * 113.99772 * 90.00609 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5698 1.2065 0.0068 5 6 4.3408 2.5013 0.0142 6 6 4.2355 -0.0248 0.0005 7 6 5.7097 -0.0814 0.0009 8 8 6.3176 -0.1041 -1.0519 9 7 6.3830 -0.1023 1.1683 10 6 7.8471 -0.1524 1.1688 11 1 8.1901 -0.7550 0.3278 12 6 8.4058 1.2666 1.0404 13 6 7.8941 2.1198 2.2054 14 7 8.2339 1.4493 3.4677 15 6 8.9204 2.1145 4.4483 16 1 9.5606 1.5680 5.1250 17 6 8.7933 3.4912 4.5725 18 7 7.8104 4.1191 3.9627 19 14 10.0175 4.4527 5.6053 20 1 11.3839 4.2667 5.0542 21 1 9.6646 5.8948 5.5764 22 1 9.9775 3.9608 7.0059 23 6 7.8229 0.0517 3.6582 24 1 6.7353 -0.0068 3.7012 25 6 8.4202 -0.4857 4.9603 26 6 8.3355 -0.7784 2.4770 27 6 3.4757 -1.2041 -0.0004 28 8 4.0992 -2.4064 -0.0009 29 7 2.1546 -1.1488 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6411 2.1375 0.0004 34 1 4.5272 2.8191 -1.0117 35 1 3.7618 3.2661 0.5319 36 1 5.2911 2.3554 0.5278 37 1 5.8980 -0.0841 2.0083 38 1 9.4950 1.2325 1.0656 39 1 8.0772 1.7032 0.0974 40 1 8.3664 3.1017 2.1744 41 1 6.8126 2.2322 2.1285 42 1 7.7219 5.0812 4.0493 43 1 8.0643 0.1139 5.7980 44 1 8.1145 -1.5228 5.0994 45 1 9.5078 -0.4314 4.9107 46 1 7.9563 -1.7972 2.5566 47 1 9.4253 -0.7933 2.4886 48 1 4.2799 -2.7560 0.8824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947594533.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:36 Heat of formation + Delta-G solvation = -51.019145 kcal Electronic energy + Delta-G solvation = -30180.073456 eV Core-core repulsion = 26234.551939 eV Total energy + Delta-G solvation = -3945.521517 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.09863 -40.75358 -39.11561 -38.44684 -35.91851 -35.29821 -34.07490 -33.04120 -32.61762 -31.39288 -29.35919 -28.52535 -27.90207 -26.79946 -24.69581 -23.80449 -23.06894 -22.27686 -21.76957 -20.26247 -19.53644 -18.97705 -18.30473 -18.17840 -17.13256 -16.99880 -16.55289 -16.02024 -15.89109 -15.54750 -15.49028 -15.17591 -14.91174 -14.67298 -14.42573 -14.24781 -14.15321 -13.97784 -13.93916 -13.35391 -13.26544 -13.21872 -12.99732 -12.82360 -12.80660 -12.66735 -12.63090 -12.49423 -12.31439 -12.18770 -11.97728 -11.70492 -11.42149 -11.37499 -10.99991 -10.63081 -10.52862 -10.47554 -10.09143 -9.86324 -8.57556 -7.80684 -5.25335 -0.29931 0.01285 1.42909 1.48164 1.50935 1.55747 2.07545 2.36159 2.53334 2.54431 3.34872 3.40550 3.53164 3.60447 3.66956 3.93429 3.97225 4.08043 4.18028 4.18995 4.27539 4.43106 4.49133 4.55356 4.59421 4.61248 4.66276 4.78824 4.82608 4.91956 4.94935 4.96303 5.00880 5.03752 5.10118 5.13279 5.16031 5.16949 5.42662 5.50573 5.50963 5.54546 5.58745 5.75526 5.79605 6.40063 6.46313 6.47553 6.77758 7.09448 7.21947 7.93981 8.44755 9.25142 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014934 B = 0.003586 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.407303 B = 7805.719296 C = 8513.169389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.163 3.837 3 C -0.179 4.179 4 C 0.007 3.993 5 C -0.124 4.124 6 C -0.223 4.223 7 C 0.581 3.419 8 O -0.573 6.573 9 N -0.695 5.695 10 C 0.158 3.842 11 H 0.076 0.924 12 C -0.143 4.143 13 C 0.190 3.810 14 N -0.601 5.601 15 C -0.249 4.249 16 H 0.074 0.926 17 C -0.049 4.049 18 N -0.933 5.933 19 Si 0.955 3.045 20 H -0.283 1.283 21 H -0.299 1.299 22 H -0.276 1.276 23 C 0.162 3.838 24 H 0.022 0.978 25 C -0.131 4.131 26 C -0.125 4.125 27 C 0.345 3.655 28 O -0.486 6.486 29 N -0.525 5.525 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.179 0.821 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.052 0.948 37 H 0.405 0.595 38 H 0.062 0.938 39 H 0.045 0.955 40 H 0.048 0.952 41 H 0.004 0.996 42 H 0.246 0.754 43 H 0.040 0.960 44 H 0.076 0.924 45 H 0.049 0.951 46 H 0.091 0.909 47 H 0.076 0.924 48 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.425 -8.707 -4.477 15.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.025 3.975 3 C -0.198 4.198 4 C -0.001 4.001 5 C -0.180 4.180 6 C -0.230 4.230 7 C 0.367 3.633 8 O -0.453 6.453 9 N -0.345 5.345 10 C 0.054 3.946 11 H 0.095 0.905 12 C -0.183 4.183 13 C 0.064 3.936 14 N -0.325 5.325 15 C -0.380 4.380 16 H 0.092 0.908 17 C -0.244 4.244 18 N -0.579 5.579 19 Si 0.785 3.215 20 H -0.210 1.210 21 H -0.226 1.226 22 H -0.202 1.202 23 C 0.056 3.944 24 H 0.040 0.960 25 C -0.188 4.188 26 C -0.164 4.164 27 C 0.166 3.834 28 O -0.296 6.296 29 N -0.246 5.246 30 H 0.117 0.883 31 H 0.124 0.876 32 H 0.096 0.904 33 H 0.196 0.804 34 H 0.106 0.894 35 H 0.120 0.880 36 H 0.071 0.929 37 H 0.242 0.758 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.022 0.978 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.095 0.905 45 H 0.068 0.932 46 H 0.109 0.891 47 H 0.095 0.905 48 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -12.425 -9.337 -5.760 16.575 hybrid contribution 1.255 1.573 1.207 2.346 sum -11.170 -7.764 -4.553 14.345 Atomic orbital electron populations 1.20928 0.85225 1.05042 1.04796 1.21876 0.98774 0.86539 0.90280 1.22154 0.92667 1.01086 1.03917 1.20509 0.94838 0.93721 0.90988 1.20965 0.99799 0.93581 1.03681 1.20840 0.94054 0.95218 1.12846 1.17975 0.86624 0.74908 0.83800 1.90755 1.70246 1.51555 1.32717 1.46076 1.07580 1.72896 1.07950 1.20839 0.78671 0.96079 0.98999 0.90548 1.22396 1.00469 0.96817 0.98640 1.20403 0.95445 0.94593 0.83195 1.44338 1.65330 1.09029 1.13798 1.19449 1.18468 0.90159 1.09899 0.90827 1.25690 0.98767 0.98929 1.00996 1.70136 1.31373 1.07937 1.48478 0.85524 0.79384 0.77382 0.79229 1.20975 1.22569 1.20211 1.20629 0.95379 0.84311 0.94103 0.96018 1.21741 1.00586 1.00009 0.96467 1.22248 1.01839 0.99241 0.93073 1.19027 0.86766 0.84330 0.93303 1.84692 1.76784 1.32511 1.35661 1.67121 1.08616 1.31677 1.17185 0.88344 0.87633 0.90360 0.80355 0.89428 0.87979 0.92855 0.75809 0.91932 0.93662 0.93386 0.97784 0.94507 0.94064 0.90526 0.93206 0.89069 0.90531 0.71881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.20 10.16 71.24 0.72 -0.48 16 2 C 0.16 3.33 6.78 42.58 0.29 3.62 16 3 C -0.18 -3.54 9.41 22.32 0.21 -3.33 16 4 C 0.01 0.19 5.95 -19.42 -0.12 0.07 16 5 C -0.12 -3.23 9.69 71.24 0.69 -2.54 16 6 C -0.22 -6.66 5.66 -19.91 -0.11 -6.77 16 7 C 0.58 19.73 5.39 86.69 0.47 20.19 16 8 O -0.57 -23.78 16.77 -4.00 -0.07 -23.84 16 9 N -0.69 -21.58 4.26 -445.59 -1.90 -23.48 16 10 C 0.16 5.19 2.78 45.02 0.13 5.31 16 11 H 0.08 2.55 7.57 -2.39 -0.02 2.53 16 12 C -0.14 -5.55 5.77 30.67 0.18 -5.38 16 13 C 0.19 8.69 5.03 86.36 0.43 9.13 16 14 N -0.60 -27.39 2.99 -675.22 -2.02 -29.41 16 15 C -0.25 -12.71 8.60 84.03 0.72 -11.98 16 16 H 0.07 3.62 6.21 -2.91 -0.02 3.61 16 17 C -0.05 -2.59 4.96 84.86 0.42 -2.17 16 18 N -0.93 -52.81 11.14 21.65 0.24 -52.56 16 19 Si 0.96 43.59 29.58 68.60 2.03 45.62 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 23 C 0.16 5.72 3.20 44.98 0.14 5.87 16 24 H 0.02 0.78 6.64 -2.39 -0.02 0.77 16 25 C -0.13 -4.21 7.94 71.98 0.57 -3.63 16 26 C -0.12 -3.66 5.07 30.67 0.16 -3.51 16 27 C 0.35 9.75 7.77 85.13 0.66 10.41 16 28 O -0.49 -12.65 13.01 -87.29 -1.14 -13.78 16 29 N -0.53 -13.71 10.28 -296.06 -3.04 -16.75 16 30 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.11 0.71 8.07 -2.38 -0.02 0.69 16 32 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.18 2.20 8.06 -2.91 -0.02 2.17 16 34 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.10 2.17 8.10 -2.38 -0.02 2.15 16 36 H 0.05 1.73 6.48 -2.39 -0.02 1.71 16 37 H 0.41 11.90 6.85 -92.70 -0.64 11.26 16 38 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.05 2.58 6.06 -2.39 -0.01 2.56 16 41 H 0.00 0.20 7.03 -2.38 -0.02 0.18 16 42 H 0.25 13.73 8.31 -92.70 -0.77 12.95 16 43 H 0.04 1.49 7.62 -2.39 -0.02 1.47 16 44 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 45 H 0.05 1.65 7.45 -2.38 -0.02 1.63 16 46 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 48 H 0.42 6.63 9.06 -74.06 -0.67 5.96 16 Total: -1.00 -71.37 382.16 -0.64 -72.01 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: -0.31 Total: 27.38 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: 5.56 Total: 14.82 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -6.72 Total: -122.21 kcal Atomic # 8 Polarization: -36.42 SS G_CDS: -1.20 Total: -37.63 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -71.37 -0.64 -72.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947594533.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.990 kcal (2) G-P(sol) polarization free energy of solvation -71.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds