Wall clock time and date at job start Tue Mar 31 2020 17:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38357 * 119.40425 * 2 1 4 4 C 1.38338 * 119.45442 * 179.76552 * 3 2 1 5 5 C 1.50703 * 120.82470 * 180.25274 * 4 3 2 6 6 C 1.39982 * 118.34893 * 0.49468 * 4 3 2 7 7 C 1.47528 * 120.59551 * 179.77988 * 6 4 3 8 8 O 1.21591 * 120.00077 * 269.71745 * 7 6 4 9 9 N 1.34782 * 119.99822 * 89.72413 * 7 6 4 10 10 C 1.46500 * 119.99909 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.45626 * 35.02546 * 10 9 7 12 12 C 1.53033 * 109.44912 * 275.05803 * 10 9 7 13 13 C 1.52760 * 109.38517 * 301.23015 * 12 10 9 14 14 N 1.46926 * 109.00542 * 305.58761 * 13 12 10 15 15 C 1.36944 * 120.63315 * 233.58467 * 14 13 12 16 16 H 1.07997 * 120.00177 * 149.61992 * 15 14 13 17 17 C 1.38809 * 119.99816 * 329.63359 * 15 14 13 18 18 N 1.31623 * 120.00267 * 145.15869 * 17 15 14 19 19 Si 1.86803 * 119.99694 * 325.15923 * 17 15 14 20 20 H 1.48502 * 109.46920 * 270.00015 * 19 17 15 21 21 H 1.48490 * 109.47530 * 30.00158 * 19 17 15 22 22 H 1.48501 * 109.47023 * 150.00448 * 19 17 15 23 23 C 1.46922 * 118.73901 * 53.30635 * 14 13 12 24 24 H 1.09001 * 109.58376 * 66.58108 * 23 14 13 25 25 C 1.53003 * 109.58790 * 186.85304 * 23 14 13 26 26 C 1.53047 * 109.45767 * 154.99611 * 10 9 7 27 27 C 1.40282 * 118.80574 * 359.50796 * 6 4 3 28 28 O 1.35436 * 119.79705 * 180.27532 * 27 6 4 29 29 N 1.31875 * 119.40589 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.47429 * 269.98241 * 1 2 3 31 31 H 1.09006 * 109.46885 * 29.98108 * 1 2 3 32 32 H 1.08997 * 109.46819 * 149.97914 * 1 2 3 33 33 H 1.08000 * 120.27045 * 0.03638 * 3 2 1 34 34 H 1.09003 * 109.47091 * 270.24511 * 5 4 3 35 35 H 1.08994 * 109.47116 * 30.24636 * 5 4 3 36 36 H 1.08996 * 109.46929 * 150.24864 * 5 4 3 37 37 H 0.96997 * 119.99969 * 359.97438 * 9 7 6 38 38 H 1.09005 * 109.49791 * 61.30344 * 12 10 9 39 39 H 1.09006 * 109.49839 * 181.40015 * 12 10 9 40 40 H 1.09006 * 109.51179 * 185.71057 * 13 12 10 41 41 H 1.08999 * 109.43425 * 65.41876 * 13 12 10 42 42 H 0.96998 * 119.99657 * 355.30269 * 18 17 15 43 43 H 1.09002 * 109.47075 * 60.00550 * 25 23 14 44 44 H 1.09004 * 109.47042 * 180.02562 * 25 23 14 45 45 H 1.08996 * 109.47424 * 300.00544 * 25 23 14 46 46 H 1.09001 * 109.49778 * 298.68904 * 26 10 9 47 47 H 1.08998 * 109.49389 * 178.59695 * 26 10 9 48 48 H 0.96696 * 113.99992 * 90.00066 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2066 0.0049 5 6 4.3408 2.5014 0.0108 6 6 4.2355 -0.0248 -0.0009 7 6 5.7097 -0.0813 -0.0009 8 8 6.3172 -0.1047 -1.0539 9 7 6.3831 -0.1071 1.1664 10 6 7.8470 -0.1638 1.1664 11 1 8.2326 0.4114 0.3246 12 6 8.3005 -1.6198 1.0395 13 6 7.7331 -2.4309 2.2030 14 7 8.1162 -1.7871 3.4669 15 6 8.7533 -2.4994 4.4478 16 1 9.4453 -2.0036 5.1123 17 6 8.5099 -3.8588 4.5876 18 7 9.4797 -4.6660 4.9621 19 14 6.8057 -4.5425 4.2444 20 1 6.0036 -4.5230 5.4940 21 1 6.1363 -3.7093 3.2136 22 1 6.9224 -5.9390 3.7530 23 6 7.8085 -0.3629 3.6560 24 1 6.7281 -0.2256 3.7018 25 6 8.4436 0.1307 4.9575 26 6 8.3800 0.4263 2.4741 27 6 3.4757 -1.2040 -0.0008 28 8 4.0992 -2.4064 -0.0007 29 7 2.1545 -1.1489 -0.0005 30 1 -0.3634 -0.0003 1.0276 31 1 -0.3633 0.8902 -0.5136 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6410 2.1376 0.0006 34 1 4.5266 2.8183 -1.0155 35 1 3.7621 3.2665 0.5282 36 1 5.2914 2.3558 0.5238 37 1 5.8984 -0.0881 2.0064 38 1 7.9402 -2.0323 0.0971 39 1 9.3894 -1.6652 1.0645 40 1 8.1360 -3.4432 2.1718 41 1 6.6464 -2.4652 2.1253 42 1 10.3801 -4.3230 5.0743 43 1 9.5243 -0.0029 4.9079 44 1 8.2137 1.1872 5.0961 45 1 8.0450 -0.4406 5.7959 46 1 8.0763 1.4702 2.5526 47 1 9.4680 0.3617 2.4855 48 1 4.2802 -2.7554 0.8827 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947594534.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:41 Heat of formation + Delta-G solvation = -23.046820 kcal Electronic energy + Delta-G solvation = -30327.505128 eV Core-core repulsion = 26383.196582 eV Total energy + Delta-G solvation = -3944.308546 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.13014 -39.60283 -37.82265 -37.46855 -34.47512 -34.42849 -32.45265 -32.05982 -31.57190 -30.27590 -28.48973 -27.76397 -26.58156 -24.68872 -23.65565 -22.44562 -22.16398 -20.93033 -20.47830 -18.96211 -18.55692 -17.90945 -17.35748 -17.08020 -16.02938 -15.50773 -15.15164 -14.94809 -14.62157 -14.51590 -14.38276 -13.94987 -13.62817 -13.55058 -13.51586 -13.26413 -13.11814 -13.02521 -12.69714 -12.47278 -12.24212 -12.18950 -12.05994 -11.84182 -11.78319 -11.40816 -11.26098 -11.01120 -10.55817 -10.49881 -10.24833 -10.18124 -9.88565 -9.77304 -9.61519 -9.52668 -9.21043 -8.99953 -8.84645 -8.30207 -7.00121 -6.36348 -3.30077 0.57637 0.86399 2.58374 3.07657 3.31471 3.43102 3.45715 3.52186 3.66179 4.22768 4.25294 4.62410 4.63592 4.73876 4.86393 4.92217 5.03374 5.09654 5.19128 5.21390 5.23497 5.27793 5.32398 5.41722 5.47664 5.53843 5.69583 5.72608 5.74395 5.85870 5.89438 6.00273 6.08422 6.18454 6.21241 6.30947 6.32348 6.35610 6.48830 6.67609 6.77557 6.80775 6.90830 6.99522 7.30582 7.58165 7.66818 8.08073 8.25129 8.43941 9.00812 9.62453 10.22159 11.02475 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013481 B = 0.004175 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.543645 B = 6704.624940 C = 7631.286387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.167 3.833 3 C -0.190 4.190 4 C 0.010 3.990 5 C -0.123 4.123 6 C -0.201 4.201 7 C 0.575 3.425 8 O -0.529 6.529 9 N -0.709 5.709 10 C 0.154 3.846 11 H 0.078 0.922 12 C -0.150 4.150 13 C 0.149 3.851 14 N -0.594 5.594 15 C -0.360 4.360 16 H 0.069 0.931 17 C 0.005 3.995 18 N -0.900 5.900 19 Si 1.018 2.982 20 H -0.299 1.299 21 H -0.273 1.273 22 H -0.295 1.295 23 C 0.167 3.833 24 H 0.020 0.980 25 C -0.134 4.134 26 C -0.138 4.138 27 C 0.359 3.641 28 O -0.473 6.473 29 N -0.506 5.506 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.143 0.857 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.400 0.600 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.025 0.975 42 H 0.267 0.733 43 H 0.055 0.945 44 H 0.038 0.962 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.078 0.922 48 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.353 15.549 -7.462 22.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.029 3.971 3 C -0.209 4.209 4 C 0.002 3.998 5 C -0.179 4.179 6 C -0.208 4.208 7 C 0.359 3.641 8 O -0.405 6.405 9 N -0.360 5.360 10 C 0.050 3.950 11 H 0.096 0.904 12 C -0.190 4.190 13 C 0.023 3.977 14 N -0.319 5.319 15 C -0.488 4.488 16 H 0.087 0.913 17 C -0.199 4.199 18 N -0.537 5.537 19 Si 0.848 3.152 20 H -0.227 1.227 21 H -0.199 1.199 22 H -0.221 1.221 23 C 0.061 3.939 24 H 0.037 0.963 25 C -0.192 4.192 26 C -0.178 4.178 27 C 0.179 3.821 28 O -0.281 6.281 29 N -0.226 5.226 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.161 0.839 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.236 0.764 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.043 0.957 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.082 0.918 46 H 0.076 0.924 47 H 0.096 0.904 48 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -15.179 13.373 -8.735 22.035 hybrid contribution 1.173 1.814 0.860 2.325 sum -14.006 15.187 -7.875 22.109 Atomic orbital electron populations 1.20797 0.88185 1.03856 1.03536 1.21179 0.96978 0.87094 0.91865 1.21748 0.93601 0.99564 1.06035 1.20243 0.93671 0.94125 0.91762 1.20926 1.00178 0.93090 1.03713 1.20912 0.95264 0.94111 1.10532 1.17733 0.85809 0.76217 0.84386 1.90798 1.69100 1.49305 1.31293 1.46225 1.08116 1.73771 1.07931 1.20936 0.78159 0.97489 0.98385 0.90426 1.22380 1.01565 0.95202 0.99862 1.21202 0.96239 0.95837 0.84444 1.44430 1.69190 1.05064 1.13172 1.20027 1.21775 0.92731 1.14242 0.91324 1.26126 1.03894 0.92549 0.97332 1.70889 1.01401 1.35910 1.45457 0.84595 0.78330 0.75763 0.76557 1.22747 1.19920 1.22143 1.20421 0.95089 0.85924 0.92492 0.96303 1.21771 1.01309 0.98045 0.98035 1.22353 1.01883 0.98445 0.95101 1.19037 0.86303 0.84650 0.92075 1.84735 1.76510 1.32467 1.34361 1.67066 1.09173 1.30390 1.16005 0.89849 0.90278 0.90102 0.83884 0.89669 0.90168 0.90643 0.76418 0.92162 0.91086 0.91654 0.95743 0.92307 0.92634 0.94297 0.91848 0.92368 0.90362 0.73240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.16 36.01 0.37 -0.36 16 2 C 0.17 1.76 6.78 -82.53 -0.56 1.21 16 3 C -0.19 -1.75 9.41 -39.50 -0.37 -2.12 16 4 C 0.01 0.11 5.95 -103.93 -0.62 -0.51 16 5 C -0.12 -1.06 9.69 36.01 0.35 -0.71 16 6 C -0.20 -2.81 5.66 -104.69 -0.59 -3.40 16 7 C 0.57 8.98 5.38 -12.47 -0.07 8.92 16 8 O -0.53 -10.16 16.77 5.29 0.09 -10.07 16 9 N -0.71 -10.24 4.26 -54.81 -0.23 -10.47 16 10 C 0.15 2.41 2.78 -67.89 -0.19 2.22 16 11 H 0.08 1.23 7.58 -51.93 -0.39 0.84 16 12 C -0.15 -2.71 5.75 -26.84 -0.15 -2.87 16 13 C 0.15 3.06 4.10 -3.93 -0.02 3.04 16 14 N -0.59 -12.91 2.68 -165.04 -0.44 -13.35 16 15 C -0.36 -9.33 8.68 -15.06 -0.13 -9.46 16 16 H 0.07 1.90 6.43 -52.49 -0.34 1.56 16 17 C 0.01 0.15 4.83 -17.43 -0.08 0.06 16 18 N -0.90 -26.79 13.70 55.49 0.76 -26.03 16 19 Si 1.02 24.37 27.08 -169.99 -4.60 19.77 16 20 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.27 -5.80 4.72 56.52 0.27 -5.53 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 23 C 0.17 2.96 3.20 -67.60 -0.22 2.74 16 24 H 0.02 0.33 6.65 -51.93 -0.35 -0.02 16 25 C -0.13 -2.31 7.95 37.16 0.30 -2.01 16 26 C -0.14 -2.08 5.07 -26.61 -0.13 -2.22 16 27 C 0.36 5.29 7.77 -16.61 -0.13 5.16 16 28 O -0.47 -7.15 13.02 -18.00 -0.23 -7.39 16 29 N -0.51 -6.97 10.28 -9.21 -0.09 -7.06 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.36 8.07 -51.93 -0.42 -0.06 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 36 H 0.07 0.72 7.19 -51.93 -0.37 0.35 16 37 H 0.40 5.39 6.86 -40.82 -0.28 5.11 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.07 1.51 6.00 -51.93 -0.31 1.20 16 41 H 0.02 0.49 6.15 -51.93 -0.32 0.17 16 42 H 0.27 7.89 8.73 -40.82 -0.36 7.54 16 43 H 0.05 1.02 7.44 -51.93 -0.39 0.64 16 44 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 1.20 7.63 -51.93 -0.40 0.81 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 48 H 0.41 4.83 9.06 45.56 0.41 5.24 16 LS Contribution 378.96 15.07 5.71 5.71 Total: -1.00 -33.31 378.96 -7.96 -41.27 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -6.66 Total: 7.94 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -2.25 Total: -0.32 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: -0.01 Total: -56.92 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.15 Total: -17.45 kcal Atomic # 14 Polarization: 24.37 SS G_CDS: -4.60 Total: 19.77 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.31 -7.96 -41.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947594534.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.224 kcal (2) G-P(sol) polarization free energy of solvation -33.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds