Wall clock time and date at job start Tue Mar 31 2020 17:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38357 * 119.40425 * 2 1 4 4 C 1.38338 * 119.45442 * 179.76552 * 3 2 1 5 5 C 1.50703 * 120.82470 * 180.25274 * 4 3 2 6 6 C 1.39982 * 118.34893 * 0.49468 * 4 3 2 7 7 C 1.47528 * 120.59551 * 179.77988 * 6 4 3 8 8 O 1.21591 * 120.00077 * 269.71745 * 7 6 4 9 9 N 1.34782 * 119.99822 * 89.72413 * 7 6 4 10 10 C 1.46500 * 119.99909 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.45626 * 35.02546 * 10 9 7 12 12 C 1.53033 * 109.44912 * 275.05803 * 10 9 7 13 13 C 1.52760 * 109.38517 * 301.23015 * 12 10 9 14 14 N 1.46926 * 109.00542 * 305.58761 * 13 12 10 15 15 C 1.36944 * 120.63315 * 233.58467 * 14 13 12 16 16 H 1.07997 * 120.00177 * 149.61992 * 15 14 13 17 17 C 1.38809 * 119.99816 * 329.63359 * 15 14 13 18 18 N 1.31623 * 120.00267 * 145.15869 * 17 15 14 19 19 Si 1.86803 * 119.99694 * 325.15923 * 17 15 14 20 20 H 1.48502 * 109.46920 * 270.00015 * 19 17 15 21 21 H 1.48490 * 109.47530 * 30.00158 * 19 17 15 22 22 H 1.48501 * 109.47023 * 150.00448 * 19 17 15 23 23 C 1.46922 * 118.73901 * 53.30635 * 14 13 12 24 24 H 1.09001 * 109.58376 * 66.58108 * 23 14 13 25 25 C 1.53003 * 109.58790 * 186.85304 * 23 14 13 26 26 C 1.53047 * 109.45767 * 154.99611 * 10 9 7 27 27 C 1.40282 * 118.80574 * 359.50796 * 6 4 3 28 28 O 1.35436 * 119.79705 * 180.27532 * 27 6 4 29 29 N 1.31875 * 119.40589 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.47429 * 269.98241 * 1 2 3 31 31 H 1.09006 * 109.46885 * 29.98108 * 1 2 3 32 32 H 1.08997 * 109.46819 * 149.97914 * 1 2 3 33 33 H 1.08000 * 120.27045 * 0.03638 * 3 2 1 34 34 H 1.09003 * 109.47091 * 270.24511 * 5 4 3 35 35 H 1.08994 * 109.47116 * 30.24636 * 5 4 3 36 36 H 1.08996 * 109.46929 * 150.24864 * 5 4 3 37 37 H 0.96997 * 119.99969 * 359.97438 * 9 7 6 38 38 H 1.09005 * 109.49791 * 61.30344 * 12 10 9 39 39 H 1.09006 * 109.49839 * 181.40015 * 12 10 9 40 40 H 1.09006 * 109.51179 * 185.71057 * 13 12 10 41 41 H 1.08999 * 109.43425 * 65.41876 * 13 12 10 42 42 H 0.96998 * 119.99657 * 355.30269 * 18 17 15 43 43 H 1.09002 * 109.47075 * 60.00550 * 25 23 14 44 44 H 1.09004 * 109.47042 * 180.02562 * 25 23 14 45 45 H 1.08996 * 109.47424 * 300.00544 * 25 23 14 46 46 H 1.09001 * 109.49778 * 298.68904 * 26 10 9 47 47 H 1.08998 * 109.49389 * 178.59695 * 26 10 9 48 48 H 0.96696 * 113.99992 * 90.00066 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2066 0.0049 5 6 4.3408 2.5014 0.0108 6 6 4.2355 -0.0248 -0.0009 7 6 5.7097 -0.0813 -0.0009 8 8 6.3172 -0.1047 -1.0539 9 7 6.3831 -0.1071 1.1664 10 6 7.8470 -0.1638 1.1664 11 1 8.2326 0.4114 0.3246 12 6 8.3005 -1.6198 1.0395 13 6 7.7331 -2.4309 2.2030 14 7 8.1162 -1.7871 3.4669 15 6 8.7533 -2.4994 4.4478 16 1 9.4453 -2.0036 5.1123 17 6 8.5099 -3.8588 4.5876 18 7 9.4797 -4.6660 4.9621 19 14 6.8057 -4.5425 4.2444 20 1 6.0036 -4.5230 5.4940 21 1 6.1363 -3.7093 3.2136 22 1 6.9224 -5.9390 3.7530 23 6 7.8085 -0.3629 3.6560 24 1 6.7281 -0.2256 3.7018 25 6 8.4436 0.1307 4.9575 26 6 8.3800 0.4263 2.4741 27 6 3.4757 -1.2040 -0.0008 28 8 4.0992 -2.4064 -0.0007 29 7 2.1545 -1.1489 -0.0005 30 1 -0.3634 -0.0003 1.0276 31 1 -0.3633 0.8902 -0.5136 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6410 2.1376 0.0006 34 1 4.5266 2.8183 -1.0155 35 1 3.7621 3.2665 0.5282 36 1 5.2914 2.3558 0.5238 37 1 5.8984 -0.0881 2.0064 38 1 7.9402 -2.0323 0.0971 39 1 9.3894 -1.6652 1.0645 40 1 8.1360 -3.4432 2.1718 41 1 6.6464 -2.4652 2.1253 42 1 10.3801 -4.3230 5.0743 43 1 9.5243 -0.0029 4.9079 44 1 8.2137 1.1872 5.0961 45 1 8.0450 -0.4406 5.7959 46 1 8.0763 1.4702 2.5526 47 1 9.4680 0.3617 2.4855 48 1 4.2802 -2.7554 0.8827 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947594534.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:40 Heat of formation + Delta-G solvation = -49.332935 kcal Electronic energy + Delta-G solvation = -30328.644979 eV Core-core repulsion = 26383.196582 eV Total energy + Delta-G solvation = -3945.448398 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.11102 -40.82982 -39.24902 -38.46212 -36.01245 -35.29324 -34.18696 -33.24262 -32.79008 -31.78645 -29.38125 -28.45196 -28.02274 -26.40809 -24.67763 -24.06010 -23.15410 -22.15979 -21.76239 -20.55474 -19.55291 -19.00607 -18.90694 -18.25115 -17.18702 -16.82535 -16.54976 -16.40037 -15.90399 -15.88203 -15.25375 -15.24788 -15.00138 -14.83898 -14.57551 -14.23394 -14.10391 -13.99448 -13.91358 -13.84022 -13.35254 -13.23778 -13.02935 -12.98950 -12.80636 -12.69572 -12.62538 -12.61295 -12.35614 -12.02509 -11.69757 -11.60971 -11.38544 -11.32976 -11.06323 -10.61701 -10.50671 -10.36371 -10.15013 -9.85965 -8.93590 -8.47352 -5.38004 -0.29826 0.03641 1.39812 1.50997 1.55564 1.72463 2.05052 2.34410 2.55211 2.63726 2.99689 3.40172 3.43819 3.55993 3.63172 3.86177 3.92918 4.01284 4.08946 4.19317 4.28083 4.30433 4.47674 4.51618 4.54462 4.59241 4.60614 4.66897 4.81902 4.83493 4.88651 4.94087 4.96653 5.01464 5.02073 5.03382 5.10320 5.14405 5.19781 5.20933 5.42926 5.46206 5.52417 5.55606 5.99615 6.34544 6.35310 6.42676 6.80609 6.96902 7.07432 7.70928 8.21099 8.87676 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013481 B = 0.004175 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.543645 B = 6704.624940 C = 7631.286387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.159 3.841 3 C -0.175 4.175 4 C 0.009 3.991 5 C -0.121 4.121 6 C -0.223 4.223 7 C 0.583 3.417 8 O -0.570 6.570 9 N -0.698 5.698 10 C 0.162 3.838 11 H 0.082 0.918 12 C -0.142 4.142 13 C 0.149 3.851 14 N -0.605 5.605 15 C -0.332 4.332 16 H 0.044 0.956 17 C -0.051 4.051 18 N -0.945 5.945 19 Si 1.056 2.944 20 H -0.298 1.298 21 H -0.234 1.234 22 H -0.311 1.311 23 C 0.160 3.840 24 H 0.043 0.957 25 C -0.129 4.129 26 C -0.125 4.125 27 C 0.335 3.665 28 O -0.493 6.493 29 N -0.533 5.533 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.071 0.929 33 H 0.187 0.813 34 H 0.086 0.914 35 H 0.113 0.887 36 H 0.064 0.936 37 H 0.408 0.592 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.035 0.965 41 H 0.039 0.961 42 H 0.252 0.748 43 H 0.034 0.966 44 H 0.080 0.920 45 H 0.039 0.961 46 H 0.096 0.904 47 H 0.069 0.931 48 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.572 19.405 -8.115 27.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.021 3.979 3 C -0.194 4.194 4 C 0.001 3.999 5 C -0.177 4.177 6 C -0.230 4.230 7 C 0.368 3.632 8 O -0.449 6.449 9 N -0.349 5.349 10 C 0.057 3.943 11 H 0.100 0.900 12 C -0.182 4.182 13 C 0.024 3.976 14 N -0.331 5.331 15 C -0.462 4.462 16 H 0.062 0.938 17 C -0.248 4.248 18 N -0.586 5.586 19 Si 0.883 3.117 20 H -0.227 1.227 21 H -0.158 1.158 22 H -0.239 1.239 23 C 0.055 3.945 24 H 0.060 0.940 25 C -0.186 4.186 26 C -0.164 4.164 27 C 0.157 3.843 28 O -0.303 6.303 29 N -0.254 5.254 30 H 0.116 0.884 31 H 0.128 0.872 32 H 0.090 0.910 33 H 0.204 0.796 34 H 0.105 0.895 35 H 0.132 0.868 36 H 0.083 0.917 37 H 0.245 0.755 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.099 0.901 45 H 0.058 0.942 46 H 0.115 0.885 47 H 0.087 0.913 48 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -18.436 17.286 -9.383 26.958 hybrid contribution 2.141 0.750 1.049 2.499 sum -16.295 18.036 -8.333 25.695 Atomic orbital electron populations 1.20935 0.85553 1.04936 1.04731 1.21931 0.98722 0.86822 0.90413 1.22197 0.92923 1.00750 1.03549 1.20619 0.94675 0.93875 0.90721 1.21008 0.99955 0.92643 1.04142 1.20842 0.93923 0.95247 1.12952 1.17969 0.86574 0.74857 0.83760 1.90774 1.70195 1.51231 1.32705 1.46089 1.07469 1.73205 1.08140 1.20787 0.78986 0.95490 0.99011 0.89970 1.22246 1.00802 0.96836 0.98337 1.21149 0.96780 0.94765 0.84894 1.44517 1.69256 1.06743 1.12588 1.19915 1.20091 0.92619 1.13539 0.93844 1.27054 1.05891 0.93680 0.98208 1.71004 1.01228 1.36617 1.49725 0.84104 0.75211 0.74986 0.77401 1.22655 1.15814 1.23873 1.20714 0.96567 0.83341 0.93907 0.93980 1.21714 0.99734 1.00314 0.96849 1.22228 1.01162 0.99973 0.93057 1.19205 0.86951 0.84515 0.93667 1.84702 1.76902 1.33343 1.35366 1.67097 1.08807 1.32319 1.17200 0.88409 0.87224 0.91026 0.79572 0.89512 0.86813 0.91658 0.75508 0.92715 0.92116 0.94677 0.94381 0.93906 0.94671 0.90104 0.94194 0.88531 0.91278 0.72443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.05 10.16 71.24 0.72 -0.32 16 2 C 0.16 2.86 6.78 42.58 0.29 3.15 16 3 C -0.17 -2.46 9.41 22.32 0.21 -2.25 16 4 C 0.01 0.17 5.95 -19.42 -0.12 0.05 16 5 C -0.12 -1.60 9.69 71.24 0.69 -0.91 16 6 C -0.22 -5.82 5.66 -19.91 -0.11 -5.93 16 7 C 0.58 17.36 5.38 86.69 0.47 17.83 16 8 O -0.57 -21.52 16.77 -4.00 -0.07 -21.58 16 9 N -0.70 -18.50 4.26 -445.57 -1.90 -20.40 16 10 C 0.16 4.72 2.78 45.02 0.13 4.84 16 11 H 0.08 2.43 7.58 -2.38 -0.02 2.41 16 12 C -0.14 -5.07 5.75 30.53 0.18 -4.89 16 13 C 0.15 6.07 4.10 86.22 0.35 6.43 16 14 N -0.61 -25.92 2.68 -676.06 -1.81 -27.73 16 15 C -0.33 -17.55 8.68 84.03 0.73 -16.82 16 16 H 0.04 2.49 6.43 -2.91 -0.02 2.48 16 17 C -0.05 -2.88 4.83 84.86 0.41 -2.47 16 18 N -0.95 -58.89 13.70 21.65 0.30 -58.59 16 19 Si 1.06 50.20 27.08 68.60 1.86 52.05 16 20 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 21 H -0.23 -9.44 4.72 99.48 0.47 -8.97 16 22 H -0.31 -15.57 7.11 99.48 0.71 -14.87 16 23 C 0.16 5.25 3.20 44.97 0.14 5.39 16 24 H 0.04 1.25 6.65 -2.39 -0.02 1.24 16 25 C -0.13 -4.18 7.95 71.98 0.57 -3.60 16 26 C -0.12 -3.38 5.07 30.67 0.16 -3.22 16 27 C 0.34 9.60 7.77 85.13 0.66 10.26 16 28 O -0.49 -14.99 13.02 -87.32 -1.14 -16.13 16 29 N -0.53 -13.94 10.28 -296.05 -3.04 -16.98 16 30 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.11 0.43 8.07 -2.38 -0.02 0.42 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.19 0.95 8.06 -2.91 -0.02 0.93 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.11 0.72 8.10 -2.39 -0.02 0.70 16 36 H 0.06 1.01 7.19 -2.39 -0.02 0.99 16 37 H 0.41 9.67 6.86 -92.71 -0.64 9.03 16 38 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 39 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 40 H 0.03 1.64 6.00 -2.38 -0.01 1.62 16 41 H 0.04 1.45 6.15 -2.39 -0.01 1.44 16 42 H 0.25 15.80 8.73 -92.71 -0.81 14.99 16 43 H 0.03 1.26 7.44 -2.39 -0.02 1.24 16 44 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.04 1.47 7.63 -2.39 -0.02 1.45 16 46 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.41 9.82 9.06 -74.06 -0.67 9.15 16 Total: -1.00 -77.13 378.96 -0.91 -78.04 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: -0.58 Total: 23.79 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 5.48 Total: 7.53 kcal Atomic # 7 Polarization: -117.25 SS G_CDS: -6.46 Total: -123.70 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -1.20 Total: -37.71 kcal Atomic # 14 Polarization: 50.20 SS G_CDS: 1.86 Total: 52.05 kcal Total: -77.13 -0.91 -78.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947594534.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.711 kcal (2) G-P(sol) polarization free energy of solvation -77.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds