Wall clock time and date at job start Tue Mar 31 2020 18:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.40197 * 120.36701 * 2 1 4 4 C 1.35346 * 119.94778 * 179.77260 * 3 2 1 5 5 N 1.35761 * 120.70029 * 0.52655 * 4 3 2 6 6 C 1.46506 * 119.62120 * 179.72126 * 5 4 3 7 7 C 1.50701 * 109.46662 * 269.72884 * 6 5 4 8 8 O 1.21272 * 120.00657 * 0.02562 * 7 6 5 9 9 N 1.34785 * 119.99406 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99606 * 180.27703 * 9 7 6 11 11 H 1.08997 * 109.46078 * 324.69420 * 10 9 7 12 12 C 1.53035 * 109.46084 * 84.65810 * 10 9 7 13 13 C 1.53194 * 109.31319 * 181.38558 * 12 10 9 14 14 N 1.46928 * 108.77236 * 305.36064 * 13 12 10 15 15 C 1.36934 * 120.63321 * 233.58373 * 14 13 12 16 16 H 1.07997 * 120.00124 * 150.18789 * 15 14 13 17 17 C 1.38811 * 119.99958 * 330.19397 * 15 14 13 18 18 N 1.31623 * 120.00187 * 344.47880 * 17 15 14 19 19 Si 1.86806 * 120.00140 * 164.47879 * 17 15 14 20 20 H 1.48500 * 109.46781 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47059 * 119.99583 * 19 17 15 22 22 H 1.48493 * 109.47194 * 239.99909 * 19 17 15 23 23 C 1.46925 * 118.73805 * 53.61530 * 14 13 12 24 24 H 1.08996 * 109.70817 * 66.24082 * 23 14 13 25 25 C 1.52996 * 109.58764 * 186.60371 * 23 14 13 26 26 C 1.53043 * 109.45906 * 204.72633 * 10 9 7 27 27 C 1.34656 * 120.75435 * 359.44795 * 5 4 3 28 28 O 1.22053 * 119.98825 * 180.26921 * 27 5 4 29 29 C 1.36396 * 120.37075 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.46591 * 269.97310 * 1 2 3 31 31 H 1.08992 * 109.47042 * 29.97679 * 1 2 3 32 32 H 1.08999 * 109.46893 * 149.97400 * 1 2 3 33 33 H 1.08003 * 120.02521 * 0.02670 * 3 2 1 34 34 H 1.08002 * 119.64864 * 180.25317 * 4 3 2 35 35 H 1.08998 * 109.47006 * 149.73171 * 6 5 4 36 36 H 1.08995 * 109.47353 * 29.73247 * 6 5 4 37 37 H 0.96997 * 120.00260 * 0.02562 * 9 7 6 38 38 H 1.08994 * 109.49816 * 301.33469 * 12 10 9 39 39 H 1.08998 * 109.49772 * 61.43220 * 12 10 9 40 40 H 1.09002 * 109.58827 * 185.57956 * 13 12 10 41 41 H 1.08997 * 109.58947 * 65.14782 * 13 12 10 42 42 H 0.96999 * 120.00071 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.47226 * 179.28858 * 25 23 14 44 44 H 1.09008 * 109.46749 * 299.28303 * 25 23 14 45 45 H 1.08994 * 109.47693 * 59.28129 * 25 23 14 46 46 H 1.09000 * 109.49446 * 298.56684 * 26 10 9 47 47 H 1.09003 * 109.49978 * 58.62768 * 26 10 9 48 48 H 1.08004 * 120.34451 * 359.95838 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1997 0.0047 5 7 4.2538 0.0274 -0.0014 6 6 5.7188 0.0443 -0.0023 7 6 6.2201 0.0501 -1.4235 8 8 5.4315 0.0415 -2.3448 9 7 7.5450 0.0649 -1.6707 10 6 8.0322 0.0766 -3.0522 11 1 7.3682 -0.5211 -3.6766 12 6 8.0604 1.5162 -3.5706 13 6 8.5374 1.5212 -5.0264 14 7 9.8301 0.8269 -5.1028 15 6 10.9146 1.4330 -5.6786 16 1 11.9113 1.1913 -5.3400 17 6 10.7331 2.3581 -6.6974 18 7 9.5753 2.4340 -7.3189 19 14 12.1319 3.4956 -7.1864 20 1 13.3191 3.2121 -6.3406 21 1 12.4756 3.2721 -8.6137 22 1 11.7127 4.9070 -6.9933 23 6 9.9367 -0.5303 -4.5503 24 1 9.3233 -1.2149 -5.1361 25 6 11.3963 -0.9872 -4.5905 26 6 9.4440 -0.5123 -3.0999 27 6 3.6018 -1.1508 -0.0010 28 8 4.2313 -2.1964 -0.0015 29 6 2.1967 -1.1768 -0.0005 30 1 -0.3632 -0.0005 1.0277 31 1 -0.3633 0.8901 -0.5134 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6822 2.1486 0.0004 34 1 4.1103 2.1344 0.0088 35 1 6.0927 -0.8415 0.5112 36 1 6.0722 0.9383 0.5113 37 1 8.1758 0.0714 -0.9338 38 1 7.0590 1.9428 -3.5145 39 1 8.7434 2.1088 -2.9620 40 1 8.6541 2.5493 -5.3692 41 1 7.8083 1.0058 -5.6516 42 1 9.4486 3.0802 -8.0311 43 1 11.4751 -1.9891 -4.1686 44 1 11.7449 -0.9994 -5.6232 45 1 12.0088 -0.2987 -4.0084 46 1 10.1139 0.0994 -2.4957 47 1 9.4274 -1.5294 -2.7081 48 1 1.6684 -2.1188 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947766964.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:09 Heat of formation + Delta-G solvation = -18.284748 kcal Electronic energy + Delta-G solvation = -28924.373058 eV Core-core repulsion = 24980.271011 eV Total energy + Delta-G solvation = -3944.102047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.63633 -39.60358 -37.69442 -37.15562 -35.45726 -34.61022 -32.46594 -31.59104 -30.65451 -29.82290 -29.27567 -27.14802 -26.29986 -24.70978 -23.89579 -22.33115 -21.81824 -21.10312 -20.15720 -19.31866 -17.76709 -17.69165 -17.47608 -16.33274 -16.19918 -15.69517 -15.35765 -15.05707 -15.00687 -14.42422 -14.26395 -13.98376 -13.85661 -13.68571 -13.49453 -13.26410 -13.11515 -12.85840 -12.77711 -12.53618 -12.23625 -11.96021 -11.83996 -11.62060 -11.23755 -11.14670 -10.94472 -10.92479 -10.68342 -10.34172 -10.32344 -10.14992 -10.08880 -10.05398 -9.76992 -9.74154 -9.36283 -8.78083 -8.45101 -8.13153 -6.65173 -5.78653 -3.23057 0.64176 1.72563 2.30287 2.59619 3.19068 3.35649 3.43570 3.45228 3.58722 4.28015 4.37138 4.47585 4.49572 4.63702 4.77155 4.85520 5.00691 5.11511 5.23501 5.24317 5.32596 5.35822 5.40800 5.53654 5.55695 5.74563 5.75180 5.86742 5.96536 6.13904 6.17174 6.20798 6.30623 6.32402 6.37697 6.40370 6.48571 6.60938 6.74410 6.83898 6.89526 7.01788 7.08943 7.34646 7.55814 7.66410 7.81803 7.91708 8.24551 8.45722 9.20977 9.84465 10.42040 11.30117 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021503 B = 0.002454 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.857385 B =11406.546011 C =12145.451186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.015 3.985 3 C -0.231 4.231 4 C 0.147 3.853 5 N -0.480 5.480 6 C 0.069 3.931 7 C 0.497 3.503 8 O -0.526 6.526 9 N -0.719 5.719 10 C 0.151 3.849 11 H 0.081 0.919 12 C -0.145 4.145 13 C 0.176 3.824 14 N -0.587 5.587 15 C -0.251 4.251 16 H 0.070 0.930 17 C 0.002 3.998 18 N -0.902 5.902 19 Si 0.900 3.100 20 H -0.278 1.278 21 H -0.291 1.291 22 H -0.290 1.290 23 C 0.171 3.829 24 H 0.027 0.973 25 C -0.135 4.135 26 C -0.133 4.133 27 C 0.522 3.478 28 O -0.553 6.553 29 C -0.249 4.249 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.145 0.855 34 H 0.161 0.839 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.396 0.604 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.088 0.912 41 H 0.020 0.980 42 H 0.253 0.747 43 H 0.038 0.962 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.064 0.936 47 H 0.055 0.945 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.520 -1.283 19.379 23.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.012 3.988 3 C -0.254 4.254 4 C 0.020 3.980 5 N -0.191 5.191 6 C -0.057 4.057 7 C 0.281 3.719 8 O -0.401 6.401 9 N -0.370 5.370 10 C 0.048 3.952 11 H 0.099 0.901 12 C -0.185 4.185 13 C 0.049 3.951 14 N -0.311 5.311 15 C -0.380 4.380 16 H 0.088 0.912 17 C -0.197 4.197 18 N -0.546 5.546 19 Si 0.730 3.270 20 H -0.203 1.203 21 H -0.218 1.218 22 H -0.217 1.217 23 C 0.063 3.937 24 H 0.044 0.956 25 C -0.193 4.193 26 C -0.173 4.173 27 C 0.325 3.675 28 O -0.435 6.435 29 C -0.271 4.271 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.163 0.837 34 H 0.179 0.821 35 H 0.146 0.854 36 H 0.138 0.862 37 H 0.230 0.770 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.106 0.894 41 H 0.038 0.962 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.081 0.919 45 H 0.072 0.928 46 H 0.083 0.917 47 H 0.074 0.926 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.681 -1.881 18.544 22.543 hybrid contribution 0.939 0.810 -0.037 1.240 sum -11.742 -1.071 18.506 21.943 Atomic orbital electron populations 1.20924 0.90392 1.03638 1.02954 1.20202 0.96753 0.92679 0.89207 1.20514 0.92349 0.98923 1.13612 1.21899 0.93642 0.89504 0.92999 1.45024 1.07239 1.07285 1.59534 1.21839 0.79747 1.07096 0.96984 1.20580 0.83361 0.77196 0.90783 1.90767 1.55117 1.48617 1.45605 1.46244 1.06026 1.74589 1.10109 1.21081 0.95444 0.98306 0.80363 0.90090 1.22561 0.99997 0.94558 1.01422 1.20727 0.85978 0.99481 0.88898 1.44171 1.08671 1.10420 1.67804 1.19198 0.87252 1.19598 1.11982 0.91190 1.25126 0.96833 1.01674 0.96017 1.70036 1.23670 1.36813 1.24081 0.86261 0.81866 0.80852 0.78017 1.20273 1.21750 1.21654 1.20361 0.94777 0.88318 0.90237 0.95551 1.21788 0.96706 0.98425 1.02340 1.22381 0.94711 0.99384 1.00869 1.17074 0.89357 0.82426 0.78661 1.90950 1.69154 1.30290 1.53136 1.21903 0.92257 0.99545 1.13352 0.90183 0.90726 0.90819 0.83727 0.82147 0.85429 0.86205 0.77034 0.93049 0.92623 0.89351 0.96182 0.93694 0.94276 0.91858 0.92752 0.91738 0.92589 0.83619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 10.03 36.01 0.36 -0.36 16 2 C 0.02 0.14 5.89 -104.55 -0.62 -0.48 16 3 C -0.23 -1.86 9.71 -39.88 -0.39 -2.25 16 4 C 0.15 1.28 10.28 -16.84 -0.17 1.11 16 5 N -0.48 -5.60 2.07 -121.07 -0.25 -5.85 16 6 C 0.07 0.69 5.82 -5.19 -0.03 0.66 16 7 C 0.50 7.16 7.86 -10.98 -0.09 7.07 16 8 O -0.53 -10.13 16.10 5.56 0.09 -10.04 16 9 N -0.72 -9.61 5.08 -53.77 -0.27 -9.88 16 10 C 0.15 2.61 2.41 -67.89 -0.16 2.44 16 11 H 0.08 1.64 7.58 -51.93 -0.39 1.24 16 12 C -0.15 -2.80 5.65 -26.61 -0.15 -2.95 16 13 C 0.18 4.20 5.28 -3.71 -0.02 4.18 16 14 N -0.59 -14.26 2.99 -164.78 -0.49 -14.75 16 15 C -0.25 -6.61 8.58 -15.06 -0.13 -6.74 16 16 H 0.07 1.80 6.23 -52.49 -0.33 1.47 16 17 C 0.00 0.06 4.94 -17.43 -0.09 -0.03 16 18 N -0.90 -26.07 11.23 55.49 0.62 -25.44 16 19 Si 0.90 21.37 29.58 -169.99 -5.03 16.34 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 C 0.17 3.47 3.50 -67.60 -0.24 3.24 16 24 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 25 C -0.14 -2.48 7.95 37.16 0.30 -2.18 16 26 C -0.13 -2.21 4.84 -26.61 -0.13 -2.34 16 27 C 0.52 7.59 7.40 -15.45 -0.11 7.48 16 28 O -0.55 -10.02 16.64 4.87 0.08 -9.93 16 29 C -0.25 -2.95 9.65 -39.38 -0.38 -3.33 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 32 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 33 H 0.15 0.76 8.06 -52.48 -0.42 0.34 16 34 H 0.16 0.87 8.03 -52.49 -0.42 0.45 16 35 H 0.13 1.24 7.39 -51.93 -0.38 0.85 16 36 H 0.12 0.65 8.01 -51.93 -0.42 0.24 16 37 H 0.40 3.88 8.60 -40.82 -0.35 3.53 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.09 2.36 6.15 -51.93 -0.32 2.04 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.25 7.08 8.31 -40.82 -0.34 6.75 16 43 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.06 1.26 7.67 -51.92 -0.40 0.86 16 45 H 0.05 0.99 7.40 -51.93 -0.38 0.61 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.15 1.58 8.06 -52.48 -0.42 1.15 16 LS Contribution 387.59 15.07 5.84 5.84 Total: -1.00 -36.22 387.59 -9.05 -45.27 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -7.60 Total: 2.92 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -2.04 Total: 5.53 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: -0.39 Total: -55.93 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: 0.17 Total: -19.98 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.22 -9.05 -45.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947766964.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.986 kcal (2) G-P(sol) polarization free energy of solvation -36.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds