Wall clock time and date at job start Tue Mar 31 2020 18:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40198 * 120.37233 * 2 1 4 4 C 1.35344 * 119.95181 * 179.97438 * 3 2 1 5 5 N 1.35763 * 120.70075 * 359.97239 * 4 3 2 6 6 C 1.46502 * 119.62263 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47359 * 89.99970 * 6 5 4 8 8 O 1.21280 * 119.99803 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99770 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99658 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.45945 * 324.97219 * 10 9 7 12 12 C 1.53033 * 109.46186 * 84.93145 * 10 9 7 13 13 C 1.52760 * 109.38562 * 181.25714 * 12 10 9 14 14 N 1.46915 * 109.00966 * 305.59342 * 13 12 10 15 15 C 1.36945 * 120.63065 * 233.58343 * 14 13 12 16 16 H 1.07996 * 120.00223 * 151.62647 * 15 14 13 17 17 C 1.38812 * 119.99791 * 331.62845 * 15 14 13 18 18 N 1.31621 * 119.99722 * 343.22075 * 17 15 14 19 19 Si 1.86797 * 120.00136 * 163.22109 * 17 15 14 20 20 H 1.48497 * 109.47343 * 89.99726 * 19 17 15 21 21 H 1.48499 * 109.47138 * 210.00291 * 19 17 15 22 22 H 1.48506 * 109.47011 * 329.99973 * 19 17 15 23 23 C 1.46928 * 118.74463 * 53.30390 * 14 13 12 24 24 H 1.08998 * 109.59011 * 186.85971 * 23 14 13 25 25 C 1.53002 * 109.58164 * 66.57405 * 23 14 13 26 26 C 1.53043 * 109.45992 * 205.00128 * 10 9 7 27 27 C 1.34659 * 120.75278 * 0.29772 * 5 4 3 28 28 O 1.22063 * 119.98636 * 179.70722 * 27 5 4 29 29 C 1.36401 * 120.36860 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.46942 * 90.00422 * 1 2 3 31 31 H 1.08998 * 109.47443 * 210.00632 * 1 2 3 32 32 H 1.09005 * 109.46636 * 330.00678 * 1 2 3 33 33 H 1.08008 * 120.02251 * 359.97438 * 3 2 1 34 34 H 1.07996 * 119.64757 * 179.97438 * 4 3 2 35 35 H 1.08999 * 109.47262 * 329.99772 * 6 5 4 36 36 H 1.09008 * 109.46858 * 209.99739 * 6 5 4 37 37 H 0.96997 * 120.00459 * 0.02562 * 9 7 6 38 38 H 1.09002 * 109.50193 * 301.33620 * 12 10 9 39 39 H 1.09006 * 109.49898 * 61.43285 * 12 10 9 40 40 H 1.09001 * 109.50960 * 185.70236 * 13 12 10 41 41 H 1.09001 * 109.42767 * 65.42922 * 13 12 10 42 42 H 0.97006 * 119.99968 * 180.02562 * 18 17 15 43 43 H 1.08991 * 109.47412 * 60.00876 * 25 23 14 44 44 H 1.09004 * 109.47115 * 180.02562 * 25 23 14 45 45 H 1.09001 * 109.47524 * 299.99855 * 25 23 14 46 46 H 1.09006 * 109.49618 * 58.65866 * 26 10 9 47 47 H 1.09001 * 109.52035 * 298.58528 * 26 10 9 48 48 H 1.08007 * 120.34223 * 0.04526 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1996 0.0005 5 7 4.2538 0.0272 0.0016 6 6 5.7187 0.0440 0.0027 7 6 6.2200 0.0505 1.4239 8 8 5.4312 0.0424 2.3451 9 7 7.5448 0.0653 1.6711 10 6 8.0321 0.0722 3.0527 11 1 7.3528 0.6553 3.6744 12 6 8.0973 -1.3639 3.5775 13 6 8.5756 -1.3524 5.0282 14 7 9.8483 -0.6225 5.1067 15 6 10.9484 -1.1984 5.6842 16 1 11.9390 -0.9121 5.3633 17 6 10.7902 -2.1502 6.6822 18 7 9.6360 -2.2658 7.3043 19 14 12.2152 -3.2669 7.1423 20 1 13.0147 -2.6307 8.2199 21 1 11.6883 -4.5703 7.6204 22 1 13.0756 -3.4873 5.9521 23 6 9.9202 0.7345 4.5481 24 1 10.9513 1.0868 4.5753 25 6 9.0351 1.6745 5.3692 26 6 9.4283 0.6974 3.0979 27 6 3.6016 -1.1509 -0.0038 28 8 4.2312 -2.1967 -0.0081 29 6 2.1966 -1.1769 0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 1.6822 2.1486 -0.0004 34 1 4.1103 2.1343 0.0001 35 1 6.0722 0.9379 -0.5113 36 1 6.0926 -0.8421 -0.5104 37 1 8.1757 0.0722 0.9343 38 1 7.1071 -1.8164 3.5233 39 1 8.7954 -1.9414 2.9714 40 1 8.7199 -2.3766 5.3721 41 1 7.8312 -0.8569 5.6515 42 1 9.5255 -2.9307 8.0020 43 1 9.3814 1.6893 6.4025 44 1 9.0894 2.6805 4.9531 45 1 8.0037 1.3234 5.3365 46 1 9.3854 1.7122 2.7021 47 1 10.1141 0.1010 2.4961 48 1 1.6682 -2.1188 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947766965.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:12 Heat of formation + Delta-G solvation = -43.275448 kcal Electronic energy + Delta-G solvation = -29101.022520 eV Core-core repulsion = 25155.836795 eV Total energy + Delta-G solvation = -3945.185725 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.51803 -40.90104 -39.32330 -38.10571 -36.33848 -35.97284 -34.35702 -32.67046 -31.80294 -31.06533 -30.32947 -28.70682 -27.65917 -26.13344 -24.64991 -23.85453 -23.49005 -22.53655 -21.63286 -20.17033 -19.07444 -18.53217 -18.47046 -18.22914 -17.24331 -16.99850 -16.65062 -16.26913 -16.20783 -15.58453 -15.55328 -15.20270 -15.16454 -14.85568 -14.63847 -14.44090 -14.18119 -14.15366 -13.93232 -13.59338 -13.34264 -13.17404 -13.02070 -12.93164 -12.85607 -12.64423 -12.60357 -12.46508 -12.31021 -12.08203 -12.05240 -11.79616 -11.52261 -11.30995 -11.12636 -11.03313 -10.57666 -10.54928 -10.06523 -8.98290 -8.70154 -7.87683 -5.33160 -0.11405 0.92348 1.44294 1.45672 1.47275 1.51544 1.56168 2.17753 2.50164 2.70481 3.28499 3.55556 3.62681 3.68567 3.75063 3.84537 3.89493 4.05643 4.09739 4.18326 4.27513 4.34666 4.41025 4.41904 4.50093 4.69660 4.71868 4.78809 4.83104 4.83166 4.86294 4.90758 5.06160 5.10309 5.11551 5.15500 5.24671 5.32840 5.40931 5.46428 5.49292 5.54897 5.66477 5.67229 5.72831 6.06042 6.39140 6.49419 6.97450 7.13518 7.19056 7.85955 8.38240 9.19193 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020992 B = 0.002511 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.519628 B =11148.479696 C =11592.133560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.033 3.967 3 C -0.232 4.232 4 C 0.141 3.859 5 N -0.483 5.483 6 C 0.074 3.926 7 C 0.494 3.506 8 O -0.580 6.580 9 N -0.703 5.703 10 C 0.164 3.836 11 H 0.065 0.935 12 C -0.134 4.134 13 C 0.188 3.812 14 N -0.599 5.599 15 C -0.256 4.256 16 H 0.074 0.926 17 C -0.055 4.055 18 N -0.938 5.938 19 Si 0.966 3.034 20 H -0.283 1.283 21 H -0.299 1.299 22 H -0.267 1.267 23 C 0.158 3.842 24 H 0.073 0.927 25 C -0.152 4.152 26 C -0.116 4.116 27 C 0.500 3.500 28 O -0.614 6.614 29 C -0.296 4.296 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.184 0.816 34 H 0.207 0.793 35 H 0.184 0.816 36 H 0.126 0.874 37 H 0.419 0.581 38 H 0.030 0.970 39 H 0.058 0.942 40 H 0.048 0.952 41 H -0.012 1.012 42 H 0.247 0.753 43 H 0.026 0.974 44 H 0.079 0.921 45 H 0.031 0.969 46 H 0.100 0.900 47 H 0.074 0.926 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.857 14.730 -22.139 29.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.029 3.971 3 C -0.254 4.254 4 C 0.016 3.984 5 N -0.192 5.192 6 C -0.050 4.050 7 C 0.280 3.720 8 O -0.460 6.460 9 N -0.356 5.356 10 C 0.059 3.941 11 H 0.083 0.917 12 C -0.174 4.174 13 C 0.061 3.939 14 N -0.321 5.321 15 C -0.387 4.387 16 H 0.092 0.908 17 C -0.250 4.250 18 N -0.584 5.584 19 Si 0.794 3.206 20 H -0.210 1.210 21 H -0.226 1.226 22 H -0.192 1.192 23 C 0.051 3.949 24 H 0.091 0.909 25 C -0.212 4.212 26 C -0.155 4.155 27 C 0.306 3.694 28 O -0.502 6.502 29 C -0.317 4.317 30 H 0.118 0.882 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.201 0.799 34 H 0.223 0.777 35 H 0.201 0.799 36 H 0.144 0.856 37 H 0.256 0.744 38 H 0.049 0.951 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.006 0.994 42 H 0.056 0.944 43 H 0.046 0.954 44 H 0.098 0.902 45 H 0.050 0.950 46 H 0.119 0.881 47 H 0.092 0.908 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.996 13.972 -21.375 28.653 hybrid contribution 0.738 -1.544 0.967 1.966 sum -12.257 12.427 -20.408 26.854 Atomic orbital electron populations 1.21039 0.88012 1.04465 1.04403 1.20654 0.98534 0.92127 0.85758 1.21074 0.92533 0.99726 1.12089 1.22742 0.94422 0.89701 0.91570 1.45083 1.08059 1.07443 1.58640 1.22051 0.78993 1.10059 0.93935 1.21376 0.82939 0.75523 0.92157 1.90755 1.56456 1.50967 1.47781 1.45934 1.06488 1.73953 1.09179 1.20704 0.96261 0.95085 0.82026 0.91726 1.22258 0.98668 0.97665 0.98828 1.20251 0.86223 0.96554 0.90886 1.44346 1.08232 1.11917 1.67653 1.19539 0.87372 1.19082 1.12664 0.90794 1.25857 0.99154 1.03468 0.96569 1.70213 1.26229 1.36486 1.25500 0.85301 0.79124 0.77986 0.78191 1.20994 1.22597 1.19158 1.20759 0.98195 0.84433 0.91475 0.90867 1.22179 0.99405 0.99773 0.99797 1.22131 0.93742 1.01762 0.97842 1.17530 0.90346 0.82777 0.78752 1.90911 1.70282 1.32392 1.56620 1.21888 0.91645 1.00816 1.17391 0.88188 0.91198 0.88690 0.79851 0.77671 0.79883 0.85593 0.74362 0.95094 0.92358 0.93338 0.99375 0.94395 0.95431 0.90228 0.95004 0.88141 0.90753 0.84556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 10.03 71.23 0.71 -0.44 16 2 C 0.03 0.55 5.89 -19.82 -0.12 0.44 16 3 C -0.23 -2.78 9.71 22.08 0.21 -2.56 16 4 C 0.14 1.86 10.28 83.42 0.86 2.71 16 5 N -0.48 -10.49 2.07 -655.06 -1.36 -11.85 16 6 C 0.07 1.29 5.82 85.63 0.50 1.79 16 7 C 0.49 13.39 7.86 87.66 0.69 14.08 16 8 O -0.58 -22.39 16.09 -3.03 -0.05 -22.43 16 9 N -0.70 -16.97 5.08 -442.40 -2.25 -19.22 16 10 C 0.16 5.41 2.21 45.02 0.10 5.51 16 11 H 0.06 2.47 5.94 -2.39 -0.01 2.46 16 12 C -0.13 -5.68 5.63 30.53 0.17 -5.51 16 13 C 0.19 9.72 4.86 86.22 0.42 10.14 16 14 N -0.60 -29.76 2.70 -676.08 -1.83 -31.58 16 15 C -0.26 -14.00 9.58 84.03 0.81 -13.19 16 16 H 0.07 3.84 7.88 -2.91 -0.02 3.82 16 17 C -0.06 -3.16 4.92 84.86 0.42 -2.74 16 18 N -0.94 -57.78 11.20 21.65 0.24 -57.54 16 19 Si 0.97 45.78 29.59 68.60 2.03 47.81 16 20 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 21 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 C 0.16 6.04 3.28 44.97 0.15 6.19 16 24 H 0.07 2.70 7.93 -2.39 -0.02 2.68 16 25 C -0.15 -5.63 9.04 71.98 0.65 -4.98 16 26 C -0.12 -3.32 5.02 30.67 0.15 -3.16 16 27 C 0.50 15.45 7.40 84.82 0.63 16.08 16 28 O -0.61 -24.77 16.64 -5.52 -0.09 -24.86 16 29 C -0.30 -7.50 9.65 22.40 0.22 -7.29 16 30 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 32 H 0.09 0.54 8.10 -2.38 -0.02 0.52 16 33 H 0.18 0.74 8.06 -2.91 -0.02 0.72 16 34 H 0.21 0.70 8.04 -2.91 -0.02 0.68 16 35 H 0.18 0.75 8.01 -2.39 -0.02 0.73 16 36 H 0.13 2.36 7.38 -2.38 -0.02 2.34 16 37 H 0.42 6.44 8.60 -92.71 -0.80 5.64 16 38 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.06 2.41 8.14 -2.38 -0.02 2.40 16 40 H 0.05 2.87 6.07 -2.39 -0.01 2.86 16 41 H -0.01 -0.67 7.52 -2.39 -0.02 -0.69 16 42 H 0.25 14.86 8.31 -92.70 -0.77 14.09 16 43 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 45 H 0.03 1.27 5.76 -2.39 -0.01 1.25 16 46 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 47 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -90.45 386.63 3.44 -87.02 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.17 Total: 15.62 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: 6.57 Total: 17.05 kcal Atomic # 7 Polarization: -115.00 SS G_CDS: -5.19 Total: -120.19 kcal Atomic # 8 Polarization: -47.16 SS G_CDS: -0.14 Total: -47.30 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -90.45 3.44 -87.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947766965.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.742 kcal (2) G-P(sol) polarization free energy of solvation -90.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds