Wall clock time and date at job start Tue Mar 31 2020 17:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37990 * 120.82585 * 2 1 4 4 C 1.39122 * 119.26850 * 179.97438 * 3 2 1 5 5 O 1.35505 * 119.52915 * 180.02562 * 4 3 2 6 6 N 1.32442 * 120.95054 * 0.02562 * 4 3 2 7 7 C 1.31636 * 121.79310 * 359.70189 * 6 4 3 8 8 C 1.50704 * 119.68420 * 180.31148 * 7 6 4 9 9 C 1.39562 * 120.63122 * 0.58397 * 7 6 4 10 10 C 1.47612 * 120.50200 * 179.70438 * 9 7 6 11 11 O 1.21589 * 119.99766 * 269.72743 * 10 9 7 12 12 N 1.34769 * 120.00351 * 89.72359 * 10 9 7 13 13 C 1.46504 * 120.00573 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.45260 * 34.97224 * 13 12 10 15 15 C 1.53043 * 109.45718 * 275.00202 * 13 12 10 16 16 C 1.53193 * 109.30963 * 178.62629 * 15 13 12 17 17 N 1.46924 * 108.77570 * 54.63298 * 16 15 13 18 18 C 1.36942 * 120.62759 * 126.37031 * 17 16 15 19 19 H 1.07995 * 119.99787 * 209.84499 * 18 17 16 20 20 C 1.38811 * 119.99992 * 29.84635 * 18 17 16 21 21 N 1.31618 * 120.00106 * 15.50273 * 20 18 17 22 22 Si 1.86800 * 119.99625 * 195.50375 * 20 18 17 23 23 H 1.48496 * 109.47017 * 269.99816 * 22 20 18 24 24 H 1.48500 * 109.47174 * 29.99945 * 22 20 18 25 25 H 1.48503 * 109.46960 * 150.00254 * 22 20 18 26 26 C 1.46923 * 118.74187 * 306.64404 * 17 16 15 27 27 H 1.09004 * 109.58631 * 293.57127 * 26 17 16 28 28 C 1.52996 * 109.58910 * 173.14615 * 26 17 16 29 29 C 1.52760 * 109.00965 * 53.30656 * 26 17 16 30 30 H 1.09001 * 109.47369 * 270.02581 * 1 2 3 31 31 H 1.09001 * 109.47346 * 30.02132 * 1 2 3 32 32 H 1.08997 * 109.47386 * 150.02196 * 1 2 3 33 33 H 1.08000 * 120.36648 * 359.95934 * 3 2 1 34 34 H 0.96697 * 113.99771 * 89.99589 * 5 4 3 35 35 H 1.09002 * 109.47284 * 270.27066 * 8 7 6 36 36 H 1.09008 * 109.47045 * 30.27198 * 8 7 6 37 37 H 1.09001 * 109.46956 * 150.27038 * 8 7 6 38 38 H 0.97009 * 119.99697 * 0.02562 * 12 10 9 39 39 H 1.08996 * 109.49796 * 58.67194 * 15 13 12 40 40 H 1.09000 * 109.52406 * 298.59412 * 15 13 12 41 41 H 1.08998 * 109.58588 * 294.84653 * 16 15 13 42 42 H 1.08998 * 109.58589 * 174.42141 * 16 15 13 43 43 H 0.97003 * 119.99862 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.47177 * 59.99973 * 28 26 17 45 45 H 1.08998 * 109.46969 * 180.02562 * 28 26 17 46 46 H 1.08997 * 109.47304 * 299.99802 * 28 26 17 47 47 H 1.08997 * 109.56594 * 185.55354 * 29 26 17 48 48 H 1.09005 * 109.35800 * 65.49870 * 29 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6048 1.1471 0.0005 5 8 4.3044 2.3076 0.0011 6 7 4.2548 -0.0068 0.0005 7 6 3.6204 -1.1602 0.0059 8 6 4.4079 -2.4451 0.0127 9 6 2.2255 -1.2045 -0.0005 10 6 1.5170 -2.4995 -0.0011 11 8 1.2257 -3.0326 -1.0543 12 7 1.1931 -3.0910 1.1658 13 6 0.4904 -4.3765 1.1652 14 1 0.8337 -4.9775 0.3232 15 6 -1.0154 -4.1343 1.0386 16 6 -1.7440 -5.4815 1.0039 17 7 -1.3554 -6.2599 2.1878 18 6 -2.3069 -6.7747 3.0274 19 1 -2.0871 -6.9060 4.0766 20 6 -3.5538 -7.1277 2.5300 21 7 -3.7311 -7.2609 1.2326 22 14 -4.9801 -7.4135 3.7019 23 1 -5.0114 -8.8427 4.1040 24 1 -4.8081 -6.5637 4.9075 25 1 -6.2545 -7.0615 3.0257 26 6 0.0735 -6.4704 2.4572 27 1 0.5044 -7.0962 1.6755 28 6 0.2444 -7.1520 3.8162 29 6 0.7816 -5.1169 2.4725 30 1 -0.3634 0.0005 1.0277 31 1 -0.3634 0.8898 -0.5142 32 1 -0.3634 -0.8901 -0.5135 33 1 1.6936 2.1313 -0.0007 34 1 4.5071 2.6442 0.8846 35 1 4.6025 -2.7574 -1.0133 36 1 5.3542 -2.2885 0.5306 37 1 3.8365 -3.2186 0.5258 38 1 1.4252 -2.6654 2.0061 39 1 -1.2197 -3.5864 0.1188 40 1 -1.3642 -3.5540 1.8928 41 1 -1.4644 -6.0249 0.1013 42 1 -2.8211 -5.3147 1.0135 43 1 -4.6026 -7.5072 0.8850 44 1 -0.2681 -8.1139 3.8073 45 1 1.3050 -7.3068 4.0143 46 1 -0.1820 -6.5204 4.5956 47 1 1.8563 -5.2684 2.5733 48 1 0.4163 -4.5276 3.3136 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948069438.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:19 Heat of formation + Delta-G solvation = -29.897312 kcal Electronic energy + Delta-G solvation = -29363.052572 eV Core-core repulsion = 25418.446966 eV Total energy + Delta-G solvation = -3944.605606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -41.18139 -39.55634 -37.89523 -37.24001 -34.62236 -34.58057 -32.55304 -32.15586 -31.17275 -29.55715 -28.33703 -27.94360 -26.39822 -24.96864 -23.88214 -22.10828 -21.61860 -21.24585 -20.17909 -19.39061 -18.72923 -17.73321 -17.45707 -16.32539 -16.21203 -15.83727 -15.18430 -14.68154 -14.45589 -14.31448 -13.99393 -13.91284 -13.69031 -13.57957 -13.41911 -13.29338 -13.12774 -12.83848 -12.62906 -12.55787 -12.37098 -12.17593 -11.91848 -11.63398 -11.25951 -11.16015 -10.96858 -10.93977 -10.67845 -10.36570 -10.26010 -10.14588 -10.06592 -9.84764 -9.77481 -9.68107 -9.38513 -9.08791 -8.79161 -8.45452 -6.65873 -5.79481 -3.23513 0.47961 0.82915 2.56165 2.94265 3.30026 3.33890 3.35989 3.43111 3.44198 4.14528 4.23775 4.47064 4.57131 4.72566 4.89638 5.04813 5.17198 5.21051 5.27854 5.30271 5.33907 5.37522 5.40270 5.53163 5.61076 5.67133 5.73551 5.83032 5.89273 5.94368 6.11736 6.13141 6.19776 6.28326 6.35661 6.38736 6.46581 6.59293 6.73905 6.82250 7.00119 7.07030 7.09239 7.34219 7.53566 7.58426 7.66116 7.80660 8.23614 8.45021 9.20339 9.83926 10.41045 11.29406 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021233 B = 0.002728 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.386560 B =10260.114467 C =10837.419529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.014 3.986 3 C -0.197 4.197 4 C 0.328 3.672 5 O -0.481 6.481 6 N -0.508 5.508 7 C 0.193 3.807 8 C -0.112 4.112 9 C -0.189 4.189 10 C 0.569 3.431 11 O -0.525 6.525 12 N -0.715 5.715 13 C 0.149 3.851 14 H 0.084 0.916 15 C -0.146 4.146 16 C 0.175 3.825 17 N -0.587 5.587 18 C -0.252 4.252 19 H 0.069 0.931 20 C 0.003 3.997 21 N -0.901 5.901 22 Si 0.899 3.101 23 H -0.287 1.287 24 H -0.280 1.280 25 H -0.290 1.290 26 C 0.171 3.829 27 H 0.027 0.973 28 C -0.135 4.135 29 C -0.134 4.134 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.146 0.854 34 H 0.402 0.598 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.396 0.604 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.021 0.979 42 H 0.088 0.912 43 H 0.254 0.746 44 H 0.063 0.937 45 H 0.038 0.962 46 H 0.053 0.947 47 H 0.056 0.944 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.524 15.886 1.812 20.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.006 3.994 3 C -0.218 4.218 4 C 0.150 3.850 5 O -0.289 6.289 6 N -0.228 5.228 7 C 0.055 3.945 8 C -0.169 4.169 9 C -0.194 4.194 10 C 0.352 3.648 11 O -0.401 6.401 12 N -0.364 5.364 13 C 0.046 3.954 14 H 0.102 0.898 15 C -0.187 4.187 16 C 0.049 3.951 17 N -0.311 5.311 18 C -0.382 4.382 19 H 0.087 0.913 20 C -0.195 4.195 21 N -0.545 5.545 22 Si 0.729 3.271 23 H -0.214 1.214 24 H -0.205 1.205 25 H -0.216 1.216 26 C 0.064 3.936 27 H 0.044 0.956 28 C -0.193 4.193 29 C -0.174 4.174 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.164 0.836 34 H 0.260 0.740 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.229 0.771 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.039 0.961 42 H 0.106 0.894 43 H 0.064 0.936 44 H 0.082 0.918 45 H 0.057 0.943 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.008 15.442 0.361 20.852 hybrid contribution -1.460 0.395 1.320 2.007 sum 12.549 15.836 1.681 20.275 Atomic orbital electron populations 1.20976 0.89095 1.04494 1.03773 1.20246 0.97100 0.90812 0.91282 1.21874 0.93697 0.99383 1.06825 1.19235 0.87036 0.85019 0.93702 1.84735 1.76007 1.34085 1.34024 1.66983 1.41853 0.97830 1.16109 1.21048 0.89189 0.93135 0.91171 1.20868 1.00326 0.91519 1.04180 1.20825 0.94853 0.94706 1.09038 1.17843 0.78566 0.83760 0.84597 1.90852 1.53879 1.64270 1.31127 1.46403 1.58738 1.23637 1.07649 1.21124 0.92701 0.82293 0.99241 0.89840 1.22574 0.93964 1.01710 1.00421 1.20730 0.99445 0.86395 0.88517 1.44144 0.99213 1.59487 1.28210 1.19137 0.92505 1.36346 0.90187 0.91306 1.25103 0.99447 0.99358 0.95623 1.70021 1.22778 1.50722 1.11029 0.86352 0.82354 0.78008 0.80360 1.21421 1.20542 1.21637 1.20265 0.86493 0.91426 0.95422 0.95565 1.21793 0.98812 1.01536 0.97160 1.22317 0.99529 0.99407 0.96125 0.89529 0.90202 0.90020 0.83644 0.73980 0.89384 0.89675 0.90131 0.77055 0.92916 0.92612 0.96108 0.89367 0.93638 0.91820 0.94300 0.92812 0.92573 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 9.69 36.00 0.35 -0.86 16 2 C 0.01 0.15 5.95 -103.96 -0.62 -0.47 16 3 C -0.20 -1.87 9.72 -39.34 -0.38 -2.25 16 4 C 0.33 3.50 7.74 -16.96 -0.13 3.37 16 5 O -0.48 -4.15 13.55 -18.21 -0.25 -4.40 16 6 N -0.51 -6.24 10.29 -9.20 -0.09 -6.34 16 7 C 0.19 2.34 6.82 -82.18 -0.56 1.77 16 8 C -0.11 -1.15 9.78 36.01 0.35 -0.79 16 9 C -0.19 -2.36 5.65 -104.82 -0.59 -2.95 16 10 C 0.57 8.21 4.29 -12.44 -0.05 8.16 16 11 O -0.53 -9.77 16.77 5.29 0.09 -9.68 16 12 N -0.71 -9.39 5.07 -54.78 -0.28 -9.67 16 13 C 0.15 2.43 2.42 -67.89 -0.16 2.26 16 14 H 0.08 1.54 7.57 -51.93 -0.39 1.15 16 15 C -0.15 -2.74 5.65 -26.61 -0.15 -2.89 16 16 C 0.18 4.09 5.29 -3.71 -0.02 4.07 16 17 N -0.59 -13.88 2.99 -165.03 -0.49 -14.37 16 18 C -0.25 -6.54 8.57 -15.06 -0.13 -6.66 16 19 H 0.07 1.73 6.23 -52.49 -0.33 1.41 16 20 C 0.00 0.09 4.94 -17.43 -0.09 0.01 16 21 N -0.90 -25.68 11.23 55.49 0.62 -25.06 16 22 Si 0.90 21.13 29.58 -169.99 -5.03 16.11 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 C 0.17 3.34 3.48 -67.83 -0.24 3.10 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 28 C -0.14 -2.39 7.94 37.16 0.29 -2.10 16 29 C -0.13 -2.09 4.81 -26.83 -0.13 -2.22 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 32 H 0.08 0.98 7.18 -51.93 -0.37 0.60 16 33 H 0.15 1.01 8.06 -52.49 -0.42 0.58 16 34 H 0.40 1.32 9.06 45.56 0.41 1.73 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 37 H 0.08 0.82 7.06 -51.93 -0.37 0.45 16 38 H 0.40 4.21 8.59 -40.82 -0.35 3.86 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 2.31 6.15 -51.93 -0.32 1.99 16 43 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.06 1.23 7.62 -51.93 -0.40 0.84 16 45 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.05 0.95 7.44 -51.93 -0.39 0.56 16 47 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 386.33 15.07 5.82 5.82 Total: -1.00 -32.80 386.33 -8.57 -41.37 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -6.71 Total: 4.67 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -2.26 Total: 1.54 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: -0.24 Total: -55.44 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.16 Total: -14.08 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.80 -8.57 -41.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948069438.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.476 kcal (2) G-P(sol) polarization free energy of solvation -32.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds