Wall clock time and date at job start Tue Mar 31 2020 17:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38004 * 120.81778 * 2 1 4 4 C 1.39127 * 119.26078 * 180.27635 * 3 2 1 5 5 O 1.35497 * 119.52365 * 179.72366 * 4 3 2 6 6 N 1.32435 * 120.95100 * 359.69880 * 4 3 2 7 7 C 1.31641 * 121.79955 * 0.02562 * 6 4 3 8 8 C 1.50703 * 119.68498 * 180.02562 * 7 6 4 9 9 C 1.39562 * 120.62552 * 359.97438 * 7 6 4 10 10 C 1.47624 * 120.49728 * 179.97438 * 9 7 6 11 11 O 1.21573 * 119.99537 * 90.00351 * 10 9 7 12 12 N 1.34775 * 119.99979 * 269.99756 * 10 9 7 13 13 C 1.46500 * 119.99755 * 179.97438 * 12 10 9 14 14 H 1.09003 * 109.46007 * 34.97570 * 13 12 10 15 15 C 1.53042 * 109.46249 * 275.00547 * 13 12 10 16 16 C 1.53191 * 109.31277 * 178.62727 * 15 13 12 17 17 N 1.46928 * 108.77443 * 54.63671 * 16 15 13 18 18 C 1.36936 * 120.63361 * 126.36866 * 17 16 15 19 19 H 1.07999 * 119.99856 * 207.51582 * 18 17 16 20 20 C 1.38811 * 119.99811 * 27.50966 * 18 17 16 21 21 N 1.31627 * 119.99899 * 17.84002 * 20 18 17 22 22 Si 1.86803 * 119.99988 * 197.83548 * 20 18 17 23 23 H 1.48504 * 109.46917 * 265.36313 * 22 20 18 24 24 H 1.48491 * 109.46919 * 25.36307 * 22 20 18 25 25 H 1.48499 * 109.46989 * 145.36412 * 22 20 18 26 26 C 1.46926 * 118.73687 * 306.64102 * 17 16 15 27 27 H 1.09001 * 109.58804 * 173.15046 * 26 17 16 28 28 C 1.53003 * 109.58533 * 293.56947 * 26 17 16 29 29 C 1.52761 * 109.01078 * 53.31076 * 26 17 16 30 30 H 1.09001 * 109.47022 * 270.26831 * 1 2 3 31 31 H 1.08995 * 109.47006 * 30.26650 * 1 2 3 32 32 H 1.08996 * 109.47008 * 150.26976 * 1 2 3 33 33 H 1.07993 * 120.36656 * 359.97438 * 3 2 1 34 34 H 0.96694 * 114.00129 * 269.98195 * 5 4 3 35 35 H 1.08993 * 109.47003 * 269.98082 * 8 7 6 36 36 H 1.08997 * 109.46702 * 29.98603 * 8 7 6 37 37 H 1.09001 * 109.46491 * 149.98074 * 8 7 6 38 38 H 0.96997 * 120.00150 * 0.02562 * 12 10 9 39 39 H 1.08997 * 109.49935 * 58.67303 * 15 13 12 40 40 H 1.08998 * 109.52203 * 298.59729 * 15 13 12 41 41 H 1.08997 * 109.58758 * 294.84580 * 16 15 13 42 42 H 1.08996 * 109.70255 * 174.49016 * 16 15 13 43 43 H 0.96997 * 119.99774 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.46984 * 60.00335 * 28 26 17 45 45 H 1.09000 * 109.47023 * 179.97438 * 28 26 17 46 46 H 1.08997 * 109.47490 * 300.00016 * 28 26 17 47 47 H 1.08997 * 109.56592 * 185.55364 * 29 26 17 48 48 H 1.09000 * 109.35752 * 65.50125 * 29 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2141 1.1852 0.0000 4 6 3.6048 1.1474 -0.0059 5 8 4.3043 2.3078 -0.0116 6 7 4.2548 -0.0065 -0.0054 7 6 3.6205 -1.1600 0.0000 8 6 4.4082 -2.4448 0.0008 9 6 2.2256 -1.2043 0.0061 10 6 1.5172 -2.4994 0.0116 11 8 1.2300 -3.0306 1.0668 12 7 1.1888 -3.0928 -1.1531 13 6 0.4863 -4.3784 -1.1475 14 1 -0.2010 -4.4130 -0.3022 15 6 1.5037 -5.5150 -1.0242 16 6 0.7634 -6.8555 -0.9843 17 7 -0.1071 -6.9503 -2.1641 18 6 -0.0306 -8.0301 -3.0027 19 1 -0.3009 -7.9260 -4.0431 20 6 0.3946 -9.2585 -2.5156 21 7 0.3879 -9.4907 -1.2200 22 14 0.9761 -10.5819 -3.6987 23 1 -0.1539 -11.4906 -4.0192 24 1 1.4704 -9.9474 -4.9469 25 1 2.0740 -11.3598 -3.0705 26 6 -1.0571 -5.8616 -2.4303 27 1 -1.5361 -6.0226 -3.3961 28 6 -2.1178 -5.8255 -1.3282 29 6 -0.3004 -4.5348 -2.4509 30 1 -0.3633 0.0048 1.0277 31 1 -0.3633 0.8875 -0.5179 32 1 -0.3633 -0.8924 -0.5096 33 1 1.6935 2.1314 -0.0004 34 1 4.5038 2.6425 -0.8966 35 1 4.5941 -2.7575 -1.0266 36 1 5.3587 -2.2879 0.5107 37 1 3.8412 -3.2181 0.5191 38 1 1.4182 -2.6691 -1.9949 39 1 2.0796 -5.3899 -0.1073 40 1 2.1765 -5.4962 -1.8816 41 1 0.1593 -6.9125 -0.0788 42 1 1.4837 -7.6735 -0.9950 43 1 0.6853 -10.3489 -0.8796 44 1 -1.6356 -5.6581 -0.3651 45 1 -2.8212 -5.0170 -1.5273 46 1 -2.6521 -6.7754 -1.3068 47 1 -1.0086 -3.7121 -2.5494 48 1 0.3889 -4.5251 -3.2953 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948069439.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:24 Heat of formation + Delta-G solvation = -29.639446 kcal Electronic energy + Delta-G solvation = -29497.881632 eV Core-core repulsion = 25553.287208 eV Total energy + Delta-G solvation = -3944.594424 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -41.18169 -39.58934 -37.97318 -37.25052 -34.60682 -34.51852 -32.65309 -32.02975 -30.77991 -29.58355 -28.37383 -27.93384 -26.89022 -24.58039 -23.82660 -22.06825 -21.79825 -21.58839 -20.50933 -18.86075 -18.54894 -17.65774 -17.46867 -16.68480 -16.24522 -15.88726 -14.96600 -14.52959 -14.42760 -14.37317 -13.98683 -13.82297 -13.76340 -13.60959 -13.47713 -13.10203 -13.08562 -12.68257 -12.55360 -12.45822 -12.37318 -12.23665 -12.14986 -11.91657 -11.45329 -11.11359 -10.96728 -10.83245 -10.64976 -10.38733 -10.22927 -10.21602 -9.98805 -9.85210 -9.74702 -9.65473 -9.37301 -9.07863 -8.79608 -8.43501 -6.71730 -5.80589 -3.22259 0.48381 0.82499 2.56129 2.95874 3.30559 3.33926 3.36448 3.43942 3.45534 4.15150 4.22083 4.47080 4.57970 4.71619 4.88183 5.01591 5.19787 5.22589 5.23979 5.29116 5.34892 5.38163 5.42932 5.54893 5.59173 5.69435 5.74933 5.84733 5.87223 5.97742 6.02904 6.13670 6.22090 6.26085 6.36923 6.41845 6.54744 6.61239 6.75046 6.82524 6.91149 7.09547 7.12803 7.35559 7.54645 7.59295 7.67838 7.78359 8.24024 8.43252 9.19280 9.82972 10.39123 11.27804 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020889 B = 0.002796 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.065599 B =10013.068061 C =10693.875140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.011 3.989 3 C -0.198 4.198 4 C 0.329 3.671 5 O -0.481 6.481 6 N -0.507 5.507 7 C 0.196 3.804 8 C -0.115 4.115 9 C -0.189 4.189 10 C 0.569 3.431 11 O -0.526 6.526 12 N -0.715 5.715 13 C 0.148 3.852 14 H 0.087 0.913 15 C -0.147 4.147 16 C 0.173 3.827 17 N -0.585 5.585 18 C -0.253 4.253 19 H 0.065 0.935 20 C 0.004 3.996 21 N -0.899 5.899 22 Si 0.900 3.100 23 H -0.288 1.288 24 H -0.279 1.279 25 H -0.290 1.290 26 C 0.171 3.829 27 H 0.065 0.935 28 C -0.163 4.163 29 C -0.132 4.132 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.145 0.855 34 H 0.402 0.598 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.396 0.604 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.021 0.979 42 H 0.090 0.910 43 H 0.254 0.746 44 H 0.049 0.951 45 H 0.036 0.964 46 H 0.055 0.945 47 H 0.056 0.944 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.826 21.741 -1.170 21.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.003 3.997 3 C -0.219 4.219 4 C 0.150 3.850 5 O -0.289 6.289 6 N -0.227 5.227 7 C 0.058 3.942 8 C -0.172 4.172 9 C -0.194 4.194 10 C 0.352 3.648 11 O -0.402 6.402 12 N -0.364 5.364 13 C 0.045 3.955 14 H 0.105 0.895 15 C -0.187 4.187 16 C 0.047 3.953 17 N -0.306 5.306 18 C -0.383 4.383 19 H 0.083 0.917 20 C -0.195 4.195 21 N -0.543 5.543 22 Si 0.730 3.270 23 H -0.215 1.215 24 H -0.205 1.205 25 H -0.216 1.216 26 C 0.062 3.938 27 H 0.083 0.917 28 C -0.222 4.222 29 C -0.172 4.172 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.163 0.837 34 H 0.260 0.740 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.229 0.771 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.039 0.961 42 H 0.108 0.892 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.055 0.945 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.529 21.185 0.269 21.479 hybrid contribution -0.293 -0.251 -1.327 1.382 sum 3.237 20.934 -1.058 21.209 Atomic orbital electron populations 1.20943 0.89247 1.03910 1.03927 1.20220 0.96989 0.90857 0.91645 1.21856 0.93702 0.99312 1.07000 1.19245 0.87025 0.85040 0.93672 1.84732 1.76053 1.34097 1.33971 1.67001 1.41864 0.97833 1.16020 1.21084 0.89219 0.93142 0.90795 1.20906 1.00629 0.91656 1.04017 1.20828 0.94907 0.94667 1.09039 1.17837 0.78676 0.83622 0.84619 1.90846 1.53598 1.64803 1.30916 1.46409 1.58986 1.23384 1.07656 1.21184 0.94010 0.80881 0.99399 0.89495 1.22574 0.98200 0.97439 1.00533 1.20745 0.93238 0.92669 0.88633 1.44153 1.38225 1.19658 1.28573 1.19145 1.41625 0.87138 0.90388 0.91685 1.25027 1.01982 0.96833 0.95664 1.70043 1.49778 1.23138 1.11352 0.86326 0.78377 0.81840 0.80491 1.21513 1.20464 1.21590 1.20343 0.89468 0.87075 0.96905 0.91653 1.22317 0.98987 1.00472 1.00467 1.22233 0.99097 0.99629 0.96247 0.89518 0.90252 0.90433 0.83685 0.73979 0.89374 0.89629 0.89715 0.77083 0.92858 0.92546 0.96065 0.89230 0.93609 0.93205 0.94527 0.92588 0.92566 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.69 36.01 0.35 -0.70 16 2 C 0.01 0.11 5.95 -103.95 -0.62 -0.51 16 3 C -0.20 -1.82 9.73 -39.34 -0.38 -2.20 16 4 C 0.33 3.51 7.74 -16.96 -0.13 3.38 16 5 O -0.48 -4.16 13.55 -18.18 -0.25 -4.41 16 6 N -0.51 -6.39 10.28 -9.20 -0.09 -6.48 16 7 C 0.20 2.46 6.82 -82.18 -0.56 1.89 16 8 C -0.11 -1.30 9.78 36.01 0.35 -0.95 16 9 C -0.19 -2.36 5.65 -104.82 -0.59 -2.95 16 10 C 0.57 8.19 4.29 -12.43 -0.05 8.14 16 11 O -0.53 -9.73 16.76 5.30 0.09 -9.65 16 12 N -0.71 -9.37 5.07 -54.78 -0.28 -9.65 16 13 C 0.15 2.39 2.21 -67.89 -0.15 2.24 16 14 H 0.09 1.59 5.93 -51.93 -0.31 1.28 16 15 C -0.15 -2.76 5.65 -26.61 -0.15 -2.91 16 16 C 0.17 4.02 4.91 -3.71 -0.02 4.00 16 17 N -0.58 -13.77 2.71 -165.03 -0.45 -14.21 16 18 C -0.25 -6.66 9.58 -15.06 -0.14 -6.80 16 19 H 0.07 1.68 7.89 -52.49 -0.41 1.26 16 20 C 0.00 0.10 4.90 -17.43 -0.09 0.02 16 21 N -0.90 -25.57 11.20 55.49 0.62 -24.95 16 22 Si 0.90 21.20 29.59 -169.99 -5.03 16.17 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 C 0.17 3.28 3.27 -67.82 -0.22 3.06 16 27 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 28 C -0.16 -3.00 9.02 37.16 0.34 -2.66 16 29 C -0.13 -2.05 4.99 -26.83 -0.13 -2.18 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16 32 H 0.08 0.73 7.18 -51.93 -0.37 0.35 16 33 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.40 1.33 9.06 45.56 0.41 1.74 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 1.08 7.06 -51.93 -0.37 0.71 16 38 H 0.40 4.20 8.59 -40.82 -0.35 3.85 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.02 0.53 7.52 -51.93 -0.39 0.14 16 42 H 0.09 2.35 6.03 -51.93 -0.31 2.04 16 43 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.05 0.95 5.74 -51.93 -0.30 0.65 16 45 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 47 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 48 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 385.34 15.07 5.81 5.81 Total: -1.00 -32.80 385.34 -8.38 -41.18 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.60 Total: 5.33 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -2.21 Total: 0.86 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: -0.20 Total: -55.30 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.16 Total: -14.06 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.80 -8.38 -41.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948069439.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.540 kcal (2) G-P(sol) polarization free energy of solvation -32.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds