Wall clock time and date at job start Tue Mar 31 2020 17:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.37994 * 120.81977 * 2 1 4 4 C 1.39130 * 119.26413 * 180.02562 * 3 2 1 5 5 O 1.35498 * 119.52382 * 179.97438 * 4 3 2 6 6 N 1.32432 * 120.94807 * 359.97438 * 4 3 2 7 7 C 1.31644 * 121.79811 * 359.72973 * 6 4 3 8 8 C 1.50702 * 119.68134 * 180.26699 * 7 6 4 9 9 C 1.39555 * 120.62880 * 0.53327 * 7 6 4 10 10 C 1.47615 * 120.50194 * 179.75282 * 9 7 6 11 11 O 1.21581 * 119.99937 * 269.72380 * 10 9 7 12 12 N 1.34770 * 119.99890 * 89.72200 * 10 9 7 13 13 C 1.46506 * 119.99871 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.45830 * 325.02135 * 13 12 10 15 15 C 1.53038 * 109.46039 * 84.99953 * 13 12 10 16 16 C 1.53185 * 109.31239 * 58.65711 * 15 13 12 17 17 N 1.46929 * 108.78093 * 54.63600 * 16 15 13 18 18 C 1.36929 * 120.63493 * 126.38702 * 17 16 15 19 19 H 1.08001 * 120.00442 * 209.01125 * 18 17 16 20 20 C 1.38817 * 119.99782 * 29.01985 * 18 17 16 21 21 N 1.31619 * 120.00022 * 15.02083 * 20 18 17 22 22 Si 1.86794 * 119.99665 * 195.03153 * 20 18 17 23 23 H 1.48506 * 109.47537 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47569 * 119.99637 * 22 20 18 25 25 H 1.48503 * 109.46894 * 239.99438 * 22 20 18 26 26 C 1.46927 * 118.73232 * 306.39263 * 17 16 15 27 27 H 1.09002 * 109.58940 * 293.81928 * 26 17 16 28 28 C 1.53005 * 109.58470 * 173.39609 * 26 17 16 29 29 C 1.53037 * 109.45925 * 205.06951 * 13 12 10 30 30 H 1.08992 * 109.47131 * 269.97864 * 1 2 3 31 31 H 1.08994 * 109.46725 * 29.98298 * 1 2 3 32 32 H 1.09001 * 109.46667 * 149.98230 * 1 2 3 33 33 H 1.08005 * 120.36676 * 0.03934 * 3 2 1 34 34 H 0.96696 * 114.00049 * 89.99888 * 5 4 3 35 35 H 1.09002 * 109.47074 * 270.26662 * 8 7 6 36 36 H 1.08996 * 109.47529 * 30.26432 * 8 7 6 37 37 H 1.09001 * 109.46682 * 150.26892 * 8 7 6 38 38 H 0.97004 * 120.00191 * 0.02562 * 12 10 9 39 39 H 1.09008 * 109.49595 * 178.60646 * 15 13 12 40 40 H 1.09000 * 109.49840 * 298.69951 * 15 13 12 41 41 H 1.09001 * 109.58917 * 174.42063 * 16 15 13 42 42 H 1.09005 * 109.58815 * 294.84486 * 16 15 13 43 43 H 0.97003 * 119.99445 * 180.02562 * 21 20 18 44 44 H 1.09003 * 109.46782 * 300.70803 * 28 26 17 45 45 H 1.08996 * 109.47164 * 60.70690 * 28 26 17 46 46 H 1.09003 * 109.46869 * 180.70890 * 28 26 17 47 47 H 1.09001 * 109.50111 * 61.29068 * 29 13 12 48 48 H 1.08997 * 109.50113 * 181.39029 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6049 1.1473 -0.0005 5 8 4.3044 2.3078 -0.0011 6 7 4.2549 -0.0066 -0.0005 7 6 3.6205 -1.1601 0.0052 8 6 4.4081 -2.4449 0.0110 9 6 2.2256 -1.2044 0.0005 10 6 1.5172 -2.4994 0.0015 11 8 1.2247 -3.0332 -1.0510 12 7 1.1947 -3.0901 1.1691 13 6 0.4920 -4.3757 1.1701 14 1 -0.1996 -4.4122 0.3284 15 6 1.5088 -5.5126 1.0443 16 6 2.4995 -5.4375 2.2102 17 7 1.7463 -5.4385 3.4718 18 6 2.0306 -6.3498 4.4534 19 1 1.2539 -6.6752 5.1296 20 6 3.3173 -6.8553 4.5796 21 7 4.3209 -6.2601 3.9705 22 14 3.6243 -8.3803 5.6136 23 1 2.3401 -8.8554 6.1887 24 1 4.2100 -9.4464 4.7618 25 1 4.5669 -8.0514 6.7130 26 6 0.6821 -4.4430 3.6598 27 1 1.1186 -3.4451 3.7023 28 6 -0.0679 -4.7337 4.9614 29 6 -0.2883 -4.5292 2.4776 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3632 0.8901 -0.5135 32 1 -0.3633 -0.8899 -0.5141 33 1 1.6936 2.1314 0.0006 34 1 4.5077 2.6448 0.8821 35 1 4.6016 -2.7570 -1.0152 36 1 5.3549 -2.2883 0.5278 37 1 3.8374 -3.2185 0.5246 38 1 1.4277 -2.6641 2.0088 39 1 0.9887 -6.4702 1.0699 40 1 2.0479 -5.4159 0.1019 41 1 3.1644 -6.3008 2.1810 42 1 3.0842 -4.5207 2.1345 43 1 5.2199 -6.6137 4.0585 44 1 -0.4973 -5.7346 4.9175 45 1 0.6243 -4.6719 5.8012 46 1 -0.8648 -4.0017 5.0927 47 1 -1.0281 -3.7326 2.5555 48 1 -0.7914 -5.4961 2.4897 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948069440.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:30 Heat of formation + Delta-G solvation = -27.375470 kcal Electronic energy + Delta-G solvation = -30190.096598 eV Core-core repulsion = 26245.600347 eV Total energy + Delta-G solvation = -3944.496250 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.03627 -39.56793 -37.87497 -37.09687 -34.43559 -34.33234 -32.47340 -31.99740 -31.05832 -29.62895 -28.23523 -27.70069 -26.44816 -25.05948 -23.88662 -22.10276 -21.46143 -21.09094 -20.60685 -18.70468 -18.58599 -17.74329 -17.31396 -16.47254 -15.92898 -15.49987 -15.21554 -14.57353 -14.53364 -14.15595 -13.96827 -13.79816 -13.77533 -13.46197 -13.35214 -13.14130 -13.01268 -12.70127 -12.47413 -12.30447 -12.23844 -11.94152 -11.90433 -11.72463 -11.48529 -11.25854 -11.05279 -10.72229 -10.68677 -10.44244 -10.20204 -10.11653 -10.01904 -9.73677 -9.69615 -9.44393 -9.34353 -8.90986 -8.70037 -8.49698 -6.68152 -5.81589 -3.25627 0.65570 0.99361 2.68747 3.10843 3.34288 3.42949 3.43872 3.47186 3.53682 4.32972 4.37603 4.45293 4.73627 4.86784 5.01793 5.17013 5.26644 5.31188 5.31770 5.34778 5.38979 5.46715 5.56223 5.61871 5.70714 5.71837 5.90388 5.92712 5.99362 6.05006 6.10168 6.17927 6.25423 6.30301 6.35741 6.39085 6.50971 6.57131 6.70177 6.88563 6.95370 6.99664 7.25079 7.34033 7.64363 7.70697 7.76683 7.78970 8.35992 8.42204 9.18232 9.81484 10.37498 11.26519 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014680 B = 0.003602 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.900951 B = 7772.493196 C = 8521.467843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.009 3.991 3 C -0.200 4.200 4 C 0.329 3.671 5 O -0.482 6.482 6 N -0.506 5.506 7 C 0.202 3.798 8 C -0.116 4.116 9 C -0.189 4.189 10 C 0.572 3.428 11 O -0.536 6.536 12 N -0.703 5.703 13 C 0.153 3.847 14 H 0.074 0.926 15 C -0.155 4.155 16 C 0.175 3.825 17 N -0.586 5.586 18 C -0.251 4.251 19 H 0.070 0.930 20 C 0.004 3.996 21 N -0.902 5.902 22 Si 0.899 3.101 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.291 1.291 26 C 0.168 3.832 27 H 0.019 0.981 28 C -0.137 4.137 29 C -0.138 4.138 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.144 0.856 34 H 0.402 0.598 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.402 0.598 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.088 0.912 42 H 0.018 0.982 43 H 0.253 0.747 44 H 0.055 0.945 45 H 0.061 0.939 46 H 0.037 0.963 47 H 0.055 0.945 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.962 13.528 -4.946 15.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.001 3.999 3 C -0.221 4.221 4 C 0.150 3.850 5 O -0.290 6.290 6 N -0.226 5.226 7 C 0.063 3.937 8 C -0.173 4.173 9 C -0.195 4.195 10 C 0.356 3.644 11 O -0.414 6.414 12 N -0.354 5.354 13 C 0.049 3.951 14 H 0.092 0.908 15 C -0.195 4.195 16 C 0.049 3.951 17 N -0.310 5.310 18 C -0.380 4.380 19 H 0.088 0.912 20 C -0.195 4.195 21 N -0.546 5.546 22 Si 0.729 3.271 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.218 1.218 26 C 0.061 3.939 27 H 0.036 0.964 28 C -0.194 4.194 29 C -0.178 4.178 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.162 0.838 34 H 0.260 0.740 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.238 0.762 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.106 0.894 42 H 0.036 0.964 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.056 0.944 47 H 0.074 0.926 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.145 13.093 -6.263 15.761 hybrid contribution -0.259 -0.318 1.355 1.416 sum -6.404 12.775 -4.908 15.109 Atomic orbital electron populations 1.20931 0.89419 1.04105 1.03525 1.20180 0.96876 0.90887 0.91920 1.21819 0.93716 0.99209 1.07354 1.19254 0.87030 0.85079 0.93623 1.84713 1.76060 1.34118 1.34080 1.67019 1.41868 0.97818 1.15896 1.21144 0.89226 0.93188 0.90098 1.20947 1.00901 0.91524 1.03918 1.20779 0.94945 0.94559 1.09178 1.17801 0.78475 0.83665 0.84435 1.90796 1.54257 1.64973 1.31325 1.46224 1.58379 1.22758 1.08021 1.20954 0.93751 0.82282 0.98109 0.90804 1.22581 0.99184 0.97117 1.00655 1.20750 0.91361 1.01136 0.81852 1.44131 1.38274 1.34294 1.14264 1.19207 0.92813 1.15939 1.10080 0.91225 1.25062 0.95476 0.99642 0.99289 1.70012 0.98791 1.39241 1.46589 0.86277 0.77816 0.83253 0.79725 1.20315 1.21628 1.21817 1.20381 0.89227 0.92209 0.92077 0.96390 1.21801 0.98892 1.00441 0.98295 1.22367 0.98134 1.01874 0.95437 0.89707 0.90361 0.90344 0.83806 0.73967 0.89579 0.89451 0.89355 0.76179 0.91663 0.92703 0.89424 0.96381 0.93733 0.92616 0.91974 0.94356 0.92610 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 9.69 36.01 0.35 -0.81 16 2 C 0.01 0.11 5.95 -103.95 -0.62 -0.51 16 3 C -0.20 -2.16 9.72 -39.34 -0.38 -2.55 16 4 C 0.33 4.14 7.74 -16.96 -0.13 4.01 16 5 O -0.48 -5.00 13.55 -18.19 -0.25 -5.24 16 6 N -0.51 -7.55 10.28 -9.20 -0.09 -7.64 16 7 C 0.20 3.04 6.82 -82.18 -0.56 2.48 16 8 C -0.12 -1.71 9.78 36.01 0.35 -1.36 16 9 C -0.19 -2.73 5.65 -104.83 -0.59 -3.32 16 10 C 0.57 9.05 4.29 -12.44 -0.05 8.99 16 11 O -0.54 -10.09 16.77 5.29 0.09 -10.00 16 12 N -0.70 -10.65 4.26 -54.78 -0.23 -10.88 16 13 C 0.15 2.46 2.78 -67.89 -0.19 2.27 16 14 H 0.07 1.19 7.57 -51.93 -0.39 0.80 16 15 C -0.16 -2.89 5.77 -26.62 -0.15 -3.05 16 16 C 0.17 3.86 5.03 -3.71 -0.02 3.84 16 17 N -0.59 -13.24 2.99 -164.77 -0.49 -13.73 16 18 C -0.25 -6.35 8.61 -15.06 -0.13 -6.48 16 19 H 0.07 1.73 6.20 -52.49 -0.33 1.41 16 20 C 0.00 0.10 4.96 -17.43 -0.09 0.02 16 21 N -0.90 -24.94 11.14 55.49 0.62 -24.32 16 22 Si 0.90 20.97 29.58 -169.99 -5.03 15.94 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 C 0.17 3.07 3.20 -67.60 -0.22 2.86 16 27 H 0.02 0.34 6.64 -51.93 -0.34 0.00 16 28 C -0.14 -2.33 7.94 37.16 0.30 -2.04 16 29 C -0.14 -2.13 5.07 -26.61 -0.13 -2.27 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 32 H 0.08 0.86 7.19 -51.93 -0.37 0.49 16 33 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 34 H 0.40 2.09 9.06 45.56 0.41 2.50 16 35 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.09 1.42 6.32 -51.93 -0.33 1.10 16 38 H 0.40 5.95 6.85 -40.82 -0.28 5.67 16 39 H 0.06 1.23 8.14 -51.92 -0.42 0.80 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.09 2.25 6.06 -51.93 -0.31 1.93 16 42 H 0.02 0.42 7.00 -51.93 -0.36 0.05 16 43 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 44 H 0.05 0.98 7.40 -51.93 -0.38 0.59 16 45 H 0.06 1.16 7.66 -51.93 -0.40 0.76 16 46 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 380.44 15.07 5.73 5.73 Total: -1.00 -31.43 380.44 -8.38 -39.80 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -6.45 Total: 8.23 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -2.27 Total: 2.11 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -0.20 Total: -56.57 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.16 Total: -15.24 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.43 -8.38 -39.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948069440.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.427 kcal (2) G-P(sol) polarization free energy of solvation -31.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds