Wall clock time and date at job start Tue Mar 31 2020 17:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.37994 * 120.81977 * 2 1 4 4 C 1.39130 * 119.26413 * 180.02562 * 3 2 1 5 5 O 1.35498 * 119.52382 * 179.97438 * 4 3 2 6 6 N 1.32432 * 120.94807 * 359.97438 * 4 3 2 7 7 C 1.31644 * 121.79811 * 359.72973 * 6 4 3 8 8 C 1.50702 * 119.68134 * 180.26699 * 7 6 4 9 9 C 1.39555 * 120.62880 * 0.53327 * 7 6 4 10 10 C 1.47615 * 120.50194 * 179.75282 * 9 7 6 11 11 O 1.21581 * 119.99937 * 269.72380 * 10 9 7 12 12 N 1.34770 * 119.99890 * 89.72200 * 10 9 7 13 13 C 1.46506 * 119.99871 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.45830 * 325.02135 * 13 12 10 15 15 C 1.53038 * 109.46039 * 84.99953 * 13 12 10 16 16 C 1.53185 * 109.31239 * 58.65711 * 15 13 12 17 17 N 1.46929 * 108.78093 * 54.63600 * 16 15 13 18 18 C 1.36929 * 120.63493 * 126.38702 * 17 16 15 19 19 H 1.08001 * 120.00442 * 209.01125 * 18 17 16 20 20 C 1.38817 * 119.99782 * 29.01985 * 18 17 16 21 21 N 1.31619 * 120.00022 * 15.02083 * 20 18 17 22 22 Si 1.86794 * 119.99665 * 195.03153 * 20 18 17 23 23 H 1.48506 * 109.47537 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47569 * 119.99637 * 22 20 18 25 25 H 1.48503 * 109.46894 * 239.99438 * 22 20 18 26 26 C 1.46927 * 118.73232 * 306.39263 * 17 16 15 27 27 H 1.09002 * 109.58940 * 293.81928 * 26 17 16 28 28 C 1.53005 * 109.58470 * 173.39609 * 26 17 16 29 29 C 1.53037 * 109.45925 * 205.06951 * 13 12 10 30 30 H 1.08992 * 109.47131 * 269.97864 * 1 2 3 31 31 H 1.08994 * 109.46725 * 29.98298 * 1 2 3 32 32 H 1.09001 * 109.46667 * 149.98230 * 1 2 3 33 33 H 1.08005 * 120.36676 * 0.03934 * 3 2 1 34 34 H 0.96696 * 114.00049 * 89.99888 * 5 4 3 35 35 H 1.09002 * 109.47074 * 270.26662 * 8 7 6 36 36 H 1.08996 * 109.47529 * 30.26432 * 8 7 6 37 37 H 1.09001 * 109.46682 * 150.26892 * 8 7 6 38 38 H 0.97004 * 120.00191 * 0.02562 * 12 10 9 39 39 H 1.09008 * 109.49595 * 178.60646 * 15 13 12 40 40 H 1.09000 * 109.49840 * 298.69951 * 15 13 12 41 41 H 1.09001 * 109.58917 * 174.42063 * 16 15 13 42 42 H 1.09005 * 109.58815 * 294.84486 * 16 15 13 43 43 H 0.97003 * 119.99445 * 180.02562 * 21 20 18 44 44 H 1.09003 * 109.46782 * 300.70803 * 28 26 17 45 45 H 1.08996 * 109.47164 * 60.70690 * 28 26 17 46 46 H 1.09003 * 109.46869 * 180.70890 * 28 26 17 47 47 H 1.09001 * 109.50111 * 61.29068 * 29 13 12 48 48 H 1.08997 * 109.50113 * 181.39029 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6049 1.1473 -0.0005 5 8 4.3044 2.3078 -0.0011 6 7 4.2549 -0.0066 -0.0005 7 6 3.6205 -1.1601 0.0052 8 6 4.4081 -2.4449 0.0110 9 6 2.2256 -1.2044 0.0005 10 6 1.5172 -2.4994 0.0015 11 8 1.2247 -3.0332 -1.0510 12 7 1.1947 -3.0901 1.1691 13 6 0.4920 -4.3757 1.1701 14 1 -0.1996 -4.4122 0.3284 15 6 1.5088 -5.5126 1.0443 16 6 2.4995 -5.4375 2.2102 17 7 1.7463 -5.4385 3.4718 18 6 2.0306 -6.3498 4.4534 19 1 1.2539 -6.6752 5.1296 20 6 3.3173 -6.8553 4.5796 21 7 4.3209 -6.2601 3.9705 22 14 3.6243 -8.3803 5.6136 23 1 2.3401 -8.8554 6.1887 24 1 4.2100 -9.4464 4.7618 25 1 4.5669 -8.0514 6.7130 26 6 0.6821 -4.4430 3.6598 27 1 1.1186 -3.4451 3.7023 28 6 -0.0679 -4.7337 4.9614 29 6 -0.2883 -4.5292 2.4776 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3632 0.8901 -0.5135 32 1 -0.3633 -0.8899 -0.5141 33 1 1.6936 2.1314 0.0006 34 1 4.5077 2.6448 0.8821 35 1 4.6016 -2.7570 -1.0152 36 1 5.3549 -2.2883 0.5278 37 1 3.8374 -3.2185 0.5246 38 1 1.4277 -2.6641 2.0088 39 1 0.9887 -6.4702 1.0699 40 1 2.0479 -5.4159 0.1019 41 1 3.1644 -6.3008 2.1810 42 1 3.0842 -4.5207 2.1345 43 1 5.2199 -6.6137 4.0585 44 1 -0.4973 -5.7346 4.9175 45 1 0.6243 -4.6719 5.8012 46 1 -0.8648 -4.0017 5.0927 47 1 -1.0281 -3.7326 2.5555 48 1 -0.7914 -5.4961 2.4897 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948069440.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:28 Heat of formation + Delta-G solvation = -50.796185 kcal Electronic energy + Delta-G solvation = -30191.112196 eV Core-core repulsion = 26245.600347 eV Total energy + Delta-G solvation = -3945.511849 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.09715 -40.80593 -39.22988 -38.10881 -35.89084 -35.37373 -34.10310 -33.22767 -32.52491 -31.22541 -29.06904 -28.81296 -27.94095 -26.80173 -24.98785 -23.72152 -22.50821 -22.33301 -22.02576 -20.22886 -19.48073 -18.90937 -18.29097 -18.22706 -17.11283 -16.95557 -16.59932 -16.00018 -15.79223 -15.56429 -15.44011 -15.16193 -14.86525 -14.70678 -14.39776 -14.23781 -14.18615 -14.12112 -13.81709 -13.40621 -13.32363 -13.18801 -13.12928 -12.95241 -12.86302 -12.64860 -12.61983 -12.44366 -12.30368 -12.13024 -11.94348 -11.67497 -11.39237 -11.23478 -10.96548 -10.62791 -10.52029 -10.48413 -10.06004 -9.90603 -8.56155 -7.79773 -5.24403 -0.32590 0.04569 1.44708 1.46450 1.50313 1.58108 2.07026 2.38964 2.54797 2.58360 3.36010 3.36335 3.46158 3.60007 3.67943 3.96266 3.96962 4.11495 4.18518 4.23725 4.29688 4.37736 4.46692 4.51801 4.53759 4.62626 4.67827 4.69140 4.79394 4.84857 4.94750 4.96121 5.00201 5.05451 5.07536 5.13090 5.14997 5.19518 5.40719 5.46655 5.54383 5.56910 5.61531 5.77014 5.82414 6.46126 6.48031 6.54840 6.79688 7.11698 7.22966 7.95697 8.45933 9.26112 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014680 B = 0.003602 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.900951 B = 7772.493196 C = 8521.467843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.012 3.988 3 C -0.185 4.185 4 C 0.325 3.675 5 O -0.486 6.486 6 N -0.534 5.534 7 C 0.185 3.815 8 C -0.111 4.111 9 C -0.208 4.208 10 C 0.581 3.419 11 O -0.570 6.570 12 N -0.695 5.695 13 C 0.159 3.841 14 H 0.083 0.917 15 C -0.144 4.144 16 C 0.187 3.813 17 N -0.601 5.601 18 C -0.244 4.244 19 H 0.076 0.924 20 C -0.051 4.051 21 N -0.935 5.935 22 Si 0.954 3.046 23 H -0.265 1.265 24 H -0.298 1.298 25 H -0.297 1.297 26 C 0.160 3.840 27 H 0.022 0.978 28 C -0.130 4.130 29 C -0.124 4.124 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.060 0.940 33 H 0.182 0.818 34 H 0.424 0.576 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.405 0.595 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.002 0.998 43 H 0.245 0.755 44 H 0.049 0.951 45 H 0.038 0.962 46 H 0.077 0.923 47 H 0.093 0.907 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.726 15.820 -4.567 19.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.004 3.996 3 C -0.206 4.206 4 C 0.147 3.853 5 O -0.297 6.297 6 N -0.255 5.255 7 C 0.047 3.953 8 C -0.168 4.168 9 C -0.214 4.214 10 C 0.366 3.634 11 O -0.449 6.449 12 N -0.346 5.346 13 C 0.055 3.945 14 H 0.101 0.899 15 C -0.184 4.184 16 C 0.062 3.938 17 N -0.325 5.325 18 C -0.375 4.375 19 H 0.093 0.907 20 C -0.246 4.246 21 N -0.582 5.582 22 Si 0.784 3.216 23 H -0.190 1.190 24 H -0.225 1.225 25 H -0.225 1.225 26 C 0.054 3.946 27 H 0.039 0.961 28 C -0.188 4.188 29 C -0.163 4.163 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.079 0.921 33 H 0.200 0.800 34 H 0.286 0.714 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.242 0.758 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.020 0.980 43 H 0.054 0.946 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.096 0.904 47 H 0.111 0.889 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.941 15.411 -5.848 18.752 hybrid contribution 0.602 -0.899 1.236 1.643 sum -8.340 14.512 -4.612 17.361 Atomic orbital electron populations 1.21010 0.87277 1.04561 1.04830 1.20538 0.98334 0.90142 0.90567 1.22138 0.92891 1.00285 1.05289 1.19555 0.88031 0.84917 0.92837 1.84671 1.75929 1.32984 1.36118 1.66962 1.42836 0.98502 1.17162 1.21027 0.89632 0.93159 0.91483 1.20831 1.00663 0.91627 1.03685 1.20713 0.94713 0.94805 1.11136 1.17959 0.77635 0.83914 0.83843 1.90771 1.55704 1.66025 1.32423 1.46133 1.58074 1.22246 1.08108 1.20856 0.93004 0.81533 0.99130 0.89912 1.22401 0.98966 0.98511 0.98530 1.20422 0.91572 0.98464 0.83391 1.44357 1.39120 1.35247 1.13792 1.19523 0.92585 1.15700 1.09658 0.90691 1.25702 0.95671 1.02184 1.01072 1.70162 0.98707 1.40640 1.48646 0.85396 0.77762 0.80374 0.78076 1.18954 1.22512 1.22470 1.20654 0.88616 0.91050 0.94263 0.96063 1.21738 0.99228 1.01367 0.96451 1.22239 0.97711 1.03378 0.93005 0.87809 0.87639 0.92113 0.80050 0.71369 0.89482 0.89564 0.91324 0.75806 0.91833 0.93500 0.93548 0.97955 0.94622 0.93218 0.94237 0.90426 0.88875 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.83 9.69 71.24 0.69 -1.14 16 2 C 0.01 0.26 5.95 -19.43 -0.12 0.14 16 3 C -0.19 -3.40 9.72 22.43 0.22 -3.18 16 4 C 0.33 7.54 7.74 84.82 0.66 8.20 16 5 O -0.49 -8.89 13.55 -87.99 -1.19 -10.08 16 6 N -0.53 -15.74 10.28 -295.89 -3.04 -18.78 16 7 C 0.19 5.65 6.82 42.91 0.29 5.95 16 8 C -0.11 -3.48 9.78 71.24 0.70 -2.78 16 9 C -0.21 -5.88 5.65 -20.00 -0.11 -5.99 16 10 C 0.58 18.18 4.29 86.72 0.37 18.55 16 11 O -0.57 -21.46 16.77 -3.97 -0.07 -21.53 16 12 N -0.70 -20.46 4.26 -445.51 -1.90 -22.36 16 13 C 0.16 4.90 2.78 45.02 0.13 5.03 16 14 H 0.08 2.51 7.57 -2.39 -0.02 2.49 16 15 C -0.14 -5.44 5.77 30.67 0.18 -5.26 16 16 C 0.19 8.60 5.03 86.36 0.43 9.03 16 17 N -0.60 -27.28 2.99 -675.21 -2.02 -29.30 16 18 C -0.24 -12.44 8.61 84.04 0.72 -11.72 16 19 H 0.08 3.69 6.20 -2.91 -0.02 3.67 16 20 C -0.05 -2.76 4.96 84.86 0.42 -2.34 16 21 N -0.93 -53.89 11.14 21.65 0.24 -53.65 16 22 Si 0.95 44.04 29.58 68.60 2.03 46.07 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 25 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 26 C 0.16 5.57 3.20 44.98 0.14 5.71 16 27 H 0.02 0.76 6.64 -2.39 -0.02 0.74 16 28 C -0.13 -4.13 7.94 71.98 0.57 -3.55 16 29 C -0.12 -3.46 5.07 30.67 0.16 -3.31 16 30 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.10 1.04 8.10 -2.39 -0.02 1.02 16 32 H 0.06 1.18 7.19 -2.39 -0.02 1.16 16 33 H 0.18 1.92 8.06 -2.91 -0.02 1.89 16 34 H 0.42 3.30 9.06 -74.06 -0.67 2.63 16 35 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.07 2.38 6.32 -2.39 -0.02 2.37 16 38 H 0.41 11.56 6.85 -92.71 -0.64 10.92 16 39 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 40 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.05 2.51 6.06 -2.39 -0.01 2.50 16 42 H 0.00 0.12 7.00 -2.38 -0.02 0.10 16 43 H 0.24 13.90 8.31 -92.71 -0.77 13.13 16 44 H 0.05 1.62 7.40 -2.39 -0.02 1.60 16 45 H 0.04 1.41 7.66 -2.39 -0.02 1.39 16 46 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -70.63 380.44 -0.80 -71.44 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: -0.31 Total: 24.87 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 5.45 Total: 13.33 kcal Atomic # 7 Polarization: -117.37 SS G_CDS: -6.72 Total: -124.09 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -1.26 Total: -31.61 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -70.63 -0.80 -71.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948069440.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.640 kcal (2) G-P(sol) polarization free energy of solvation -70.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds