Wall clock time and date at job start Tue Mar 31 2020 17:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38001 * 120.82308 * 2 1 4 4 C 1.39119 * 119.26502 * 180.02562 * 3 2 1 5 5 O 1.35505 * 119.52268 * 179.97438 * 4 3 2 6 6 N 1.32437 * 120.95233 * 0.26121 * 4 3 2 7 7 C 1.31635 * 121.79876 * 359.44352 * 6 4 3 8 8 C 1.39568 * 120.62464 * 0.55794 * 7 6 4 9 9 C 1.47617 * 120.50106 * 179.74691 * 8 7 6 10 10 O 1.21574 * 119.99942 * 127.26358 * 9 8 7 11 11 N 1.34780 * 119.99719 * 307.26422 * 9 8 7 12 12 C 1.46493 * 120.00203 * 4.94721 * 11 9 8 13 13 C 1.46501 * 119.99734 * 184.94453 * 11 9 8 14 14 H 1.08998 * 109.20386 * 0.02562 * 13 11 9 15 15 C 1.50123 * 109.20805 * 119.35998 * 13 11 9 16 16 C 1.52519 * 105.42018 * 218.02611 * 15 13 11 17 17 C 1.46241 * 114.28092 * 270.59669 * 16 15 13 18 18 N 1.50171 * 107.52830 * 58.40560 * 17 16 15 19 19 C 1.36937 * 120.53932 * 109.57463 * 18 17 16 20 20 H 1.08003 * 120.00412 * 146.83794 * 19 18 17 21 21 C 1.38814 * 119.99853 * 326.83065 * 19 18 17 22 22 N 1.31623 * 119.99680 * 0.22397 * 21 19 18 23 23 Si 1.86794 * 120.00162 * 180.22462 * 21 19 18 24 24 H 1.48498 * 109.47257 * 60.00490 * 23 21 19 25 25 H 1.48508 * 109.47149 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47191 * 300.00002 * 23 21 19 27 27 C 1.43434 * 118.92302 * 289.58626 * 18 17 16 28 28 C 1.54838 * 109.21033 * 240.63985 * 13 11 9 29 29 H 1.08997 * 109.47270 * 85.47387 * 1 2 3 30 30 H 1.08995 * 109.47286 * 205.47455 * 1 2 3 31 31 H 1.09005 * 109.46763 * 325.47022 * 1 2 3 32 32 H 1.08001 * 120.36186 * 359.97438 * 3 2 1 33 33 H 0.96702 * 113.99707 * 89.99586 * 5 4 3 34 34 H 1.07999 * 119.69003 * 180.26192 * 7 6 4 35 35 H 1.09004 * 109.47296 * 84.96918 * 12 11 9 36 36 H 1.09003 * 109.47345 * 204.97158 * 12 11 9 37 37 H 1.08999 * 109.47352 * 324.96763 * 12 11 9 38 38 H 1.09003 * 110.25429 * 337.00050 * 15 13 11 39 39 H 1.08999 * 110.25051 * 99.05392 * 15 13 11 40 40 H 1.09002 * 108.52437 * 31.83777 * 16 15 13 41 41 H 1.09003 * 108.53046 * 149.35262 * 16 15 13 42 42 H 1.09001 * 109.84629 * 177.91091 * 17 16 15 43 43 H 1.09000 * 109.84246 * 298.83163 * 17 16 15 44 44 H 0.97001 * 119.99938 * 179.97438 * 22 21 19 45 45 H 1.09006 * 108.15844 * 213.29264 * 27 18 17 46 46 H 1.08996 * 108.16040 * 330.06233 * 27 18 17 47 47 H 1.09008 * 109.36017 * 320.99807 * 28 13 11 48 48 H 1.09004 * 109.35587 * 80.58141 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6048 1.1473 -0.0005 5 8 4.3043 2.3078 -0.0011 6 7 4.2548 -0.0066 -0.0062 7 6 3.6205 -1.1601 -0.0007 8 6 2.2255 -1.2044 -0.0003 9 6 1.5171 -2.4994 0.0003 10 8 0.6664 -2.7265 0.8386 11 7 1.8134 -3.4300 -0.9285 12 6 2.9117 -3.2010 -1.8705 13 6 1.0372 -4.6706 -0.9960 14 1 0.2707 -4.6566 -0.2212 15 6 0.3774 -4.7678 -2.3410 16 6 -0.9982 -5.3707 -2.0753 17 6 -1.0324 -6.8321 -2.1164 18 7 -0.0608 -7.3364 -1.0884 19 6 -0.5093 -7.9448 0.0535 20 1 0.0676 -8.7384 0.5049 21 6 -1.7054 -7.5413 0.6310 22 7 -2.4106 -6.5770 0.0785 23 14 -2.3141 -8.3669 2.1921 24 1 -1.3132 -8.1808 3.2732 25 1 -3.6054 -7.7589 2.6025 26 1 -2.5081 -9.8177 1.9415 27 6 1.3446 -7.1702 -1.3219 28 6 1.9804 -5.8754 -0.7586 29 1 -0.3633 0.0811 -1.0244 30 1 -0.3633 -0.9277 0.4420 31 1 -0.3633 0.8467 0.5826 32 1 1.6935 2.1314 -0.0004 33 1 4.5076 2.6448 0.8822 34 1 4.1849 -2.0809 -0.0014 35 1 3.8525 -3.5079 -1.4133 36 1 2.7410 -3.7831 -2.7762 37 1 2.9590 -2.1417 -2.1230 38 1 0.2758 -3.7771 -2.7840 39 1 0.9540 -5.4189 -2.9979 40 1 -1.3353 -5.0440 -1.0915 41 1 -1.6945 -4.9870 -2.8209 42 1 -2.0364 -7.1855 -1.8814 43 1 -0.7396 -7.1813 -3.1066 44 1 -3.2466 -6.2953 0.4818 45 1 1.8647 -8.0226 -0.8846 46 1 1.5145 -7.1874 -2.3984 47 1 2.9322 -5.6930 -1.2576 48 1 2.1526 -5.9940 0.3112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948765882.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:02 Heat of formation + Delta-G solvation = -1.638365 kcal Electronic energy + Delta-G solvation = -30145.803596 eV Core-core repulsion = 26202.423390 eV Total energy + Delta-G solvation = -3943.380206 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.09252 -39.60827 -37.86460 -37.08252 -35.38753 -34.00361 -32.78180 -31.56135 -30.98889 -29.75793 -28.13678 -26.98091 -26.06868 -24.64959 -23.83838 -23.06206 -22.30848 -20.10315 -19.85047 -18.65636 -18.54712 -17.60967 -17.01234 -16.72129 -16.13606 -15.94463 -15.16919 -14.82849 -14.72856 -14.33930 -14.04346 -13.75899 -13.72460 -13.24472 -13.16742 -13.11622 -12.87480 -12.62623 -12.50891 -12.26723 -12.18053 -12.05602 -11.92813 -11.87455 -11.43784 -11.07794 -10.84397 -10.44759 -10.36658 -10.11684 -10.04583 -9.94472 -9.82834 -9.77033 -9.47543 -9.37247 -9.35223 -9.07327 -8.36930 -8.28453 -6.53726 -5.74751 -3.27887 0.47746 0.90982 2.73630 3.13127 3.20552 3.41812 3.47368 3.48457 3.55672 4.29523 4.40911 4.51041 4.52846 4.78198 4.97580 5.15224 5.20871 5.32176 5.36582 5.42038 5.47647 5.48872 5.55484 5.58865 5.70373 5.80318 5.83243 5.95173 6.01164 6.12552 6.22133 6.25252 6.28515 6.46325 6.49503 6.75051 6.86487 6.88875 6.97395 7.03650 7.11749 7.13265 7.31270 7.56514 7.65090 7.70164 7.80969 8.05892 8.35175 8.54453 9.25819 9.87816 10.44744 11.31025 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017891 B = 0.003281 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.625364 B = 8531.166083 C = 9051.034133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.023 3.977 3 C -0.193 4.193 4 C 0.323 3.677 5 O -0.482 6.482 6 N -0.509 5.509 7 C 0.159 3.841 8 C -0.185 4.185 9 C 0.559 3.441 10 O -0.519 6.519 11 N -0.603 5.603 12 C 0.074 3.926 13 C 0.150 3.850 14 H 0.117 0.883 15 C -0.121 4.121 16 C -0.128 4.128 17 C 0.166 3.834 18 N -0.589 5.589 19 C -0.255 4.255 20 H 0.063 0.937 21 C 0.012 3.988 22 N -0.900 5.900 23 Si 0.902 3.098 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.285 1.285 27 C 0.164 3.836 28 C -0.150 4.150 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.145 0.855 33 H 0.402 0.598 34 H 0.167 0.833 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.050 0.950 39 H 0.059 0.941 40 H 0.104 0.896 41 H 0.026 0.974 42 H 0.095 0.905 43 H 0.001 0.999 44 H 0.254 0.746 45 H 0.034 0.966 46 H 0.027 0.973 47 H 0.047 0.953 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.065 14.510 -3.910 18.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.015 3.985 3 C -0.214 4.214 4 C 0.145 3.855 5 O -0.290 6.290 6 N -0.228 5.228 7 C 0.001 3.999 8 C -0.190 4.190 9 C 0.345 3.655 10 O -0.395 6.395 11 N -0.335 5.335 12 C -0.069 4.069 13 C 0.049 3.951 14 H 0.135 0.865 15 C -0.159 4.159 16 C -0.167 4.167 17 C 0.043 3.957 18 N -0.311 5.311 19 C -0.384 4.384 20 H 0.080 0.920 21 C -0.186 4.186 22 N -0.544 5.544 23 Si 0.732 3.268 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.034 3.966 28 C -0.192 4.192 29 H 0.099 0.901 30 H 0.118 0.882 31 H 0.095 0.905 32 H 0.163 0.837 33 H 0.261 0.739 34 H 0.184 0.816 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.122 0.878 41 H 0.045 0.955 42 H 0.113 0.887 43 H 0.019 0.981 44 H 0.064 0.936 45 H 0.052 0.948 46 H 0.046 0.954 47 H 0.066 0.934 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.277 14.444 -4.026 18.179 hybrid contribution -0.838 0.002 1.333 1.575 sum 9.439 14.446 -2.693 17.466 Atomic orbital electron populations 1.21138 0.89093 1.05768 1.03417 1.20266 0.97409 0.90633 0.90219 1.21926 0.93725 0.99445 1.06312 1.19304 0.87069 0.85197 0.93899 1.84712 1.75995 1.34186 1.34086 1.67174 1.41941 0.98191 1.15452 1.22760 0.90148 0.95222 0.91785 1.21017 0.95431 0.94933 1.07643 1.17957 0.82769 0.83059 0.81709 1.90832 1.32882 1.79030 1.36790 1.48282 1.33823 1.19245 1.32122 1.21823 0.89642 1.01529 0.93920 1.21522 0.93667 0.80198 0.99662 0.86540 1.21431 0.98978 0.99514 0.96001 1.20967 0.92882 0.99045 1.03787 1.20183 0.96360 0.91708 0.87492 1.44103 0.99254 1.67714 1.19993 1.19092 1.05779 1.12357 1.01216 0.91960 1.25213 0.99141 0.96621 0.97646 1.69832 1.15154 1.29692 1.39702 0.86386 0.77848 0.78615 0.83925 1.20974 1.21644 1.21139 1.20337 0.86806 0.93111 0.96298 1.23272 0.97043 0.97464 1.01408 0.90072 0.88184 0.90496 0.83682 0.73947 0.81634 0.92621 0.90344 0.91934 0.93150 0.92222 0.87827 0.95481 0.88724 0.98138 0.93565 0.94818 0.95432 0.93395 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.75 36.00 0.35 -1.26 16 2 C 0.02 0.28 5.94 -103.96 -0.62 -0.34 16 3 C -0.19 -1.99 9.74 -39.34 -0.38 -2.38 16 4 C 0.32 3.59 7.74 -16.96 -0.13 3.46 16 5 O -0.48 -4.36 13.55 -18.21 -0.25 -4.61 16 6 N -0.51 -6.35 10.37 -12.96 -0.13 -6.49 16 7 C 0.16 1.94 9.06 -17.14 -0.16 1.78 16 8 C -0.18 -2.52 4.77 -104.82 -0.50 -3.02 16 9 C 0.56 9.40 6.65 -12.43 -0.08 9.32 16 10 O -0.52 -10.96 14.43 5.30 0.08 -10.88 16 11 N -0.60 -9.43 2.62 -175.67 -0.46 -9.89 16 12 C 0.07 0.85 7.86 59.84 0.47 1.32 16 13 C 0.15 2.83 2.29 -68.39 -0.16 2.67 16 14 H 0.12 2.82 5.57 -51.93 -0.29 2.53 16 15 C -0.12 -2.16 4.42 -28.41 -0.13 -2.29 16 16 C -0.13 -2.72 4.98 -30.19 -0.15 -2.87 16 17 C 0.17 3.80 5.23 -5.20 -0.03 3.77 16 18 N -0.59 -14.15 2.59 -175.10 -0.45 -14.61 16 19 C -0.25 -6.81 9.59 -15.06 -0.14 -6.95 16 20 H 0.06 1.66 7.83 -52.48 -0.41 1.25 16 21 C 0.01 0.34 5.28 -17.43 -0.09 0.25 16 22 N -0.90 -24.74 8.88 55.49 0.49 -24.25 16 23 Si 0.90 21.73 29.55 -169.99 -5.02 16.71 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 C 0.16 3.33 5.18 -4.68 -0.02 3.31 16 28 C -0.15 -2.75 5.96 -24.78 -0.15 -2.90 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.10 1.51 5.65 -51.93 -0.29 1.21 16 31 H 0.08 0.72 8.13 -51.93 -0.42 0.30 16 32 H 0.15 1.13 8.06 -52.49 -0.42 0.70 16 33 H 0.40 1.58 9.06 45.56 0.41 1.99 16 34 H 0.17 1.74 6.68 -52.49 -0.35 1.39 16 35 H 0.06 0.55 7.25 -51.93 -0.38 0.17 16 36 H 0.08 0.85 7.30 -51.93 -0.38 0.47 16 37 H 0.06 0.66 6.38 -51.93 -0.33 0.33 16 38 H 0.05 0.83 7.93 -51.93 -0.41 0.42 16 39 H 0.06 1.01 6.28 -51.93 -0.33 0.68 16 40 H 0.10 2.61 5.13 -51.93 -0.27 2.34 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.09 2.45 6.16 -51.93 -0.32 2.13 16 43 H 0.00 0.01 8.13 -51.93 -0.42 -0.41 16 44 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 45 H 0.03 0.68 8.00 -51.93 -0.42 0.27 16 46 H 0.03 0.51 6.88 -51.93 -0.36 0.15 16 47 H 0.05 0.73 7.14 -51.92 -0.37 0.36 16 48 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 368.03 15.07 5.55 5.55 Total: -1.00 -31.74 368.03 -8.28 -40.01 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -6.16 Total: 4.57 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -1.92 Total: 3.88 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.56 Total: -55.23 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.17 Total: -15.49 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.74 -8.28 -40.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948765882.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.376 kcal (2) G-P(sol) polarization free energy of solvation -31.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds