Wall clock time and date at job start Tue Mar 31 2020 17:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38001 * 120.82308 * 2 1 4 4 C 1.39119 * 119.26502 * 180.02562 * 3 2 1 5 5 O 1.35505 * 119.52268 * 179.97438 * 4 3 2 6 6 N 1.32437 * 120.95233 * 0.26121 * 4 3 2 7 7 C 1.31635 * 121.79876 * 359.44352 * 6 4 3 8 8 C 1.39568 * 120.62464 * 0.55794 * 7 6 4 9 9 C 1.47617 * 120.50106 * 179.74691 * 8 7 6 10 10 O 1.21574 * 119.99942 * 127.26358 * 9 8 7 11 11 N 1.34780 * 119.99719 * 307.26422 * 9 8 7 12 12 C 1.46493 * 120.00203 * 4.94721 * 11 9 8 13 13 C 1.46501 * 119.99734 * 184.94453 * 11 9 8 14 14 H 1.08998 * 109.20386 * 0.02562 * 13 11 9 15 15 C 1.50123 * 109.20805 * 119.35998 * 13 11 9 16 16 C 1.52519 * 105.42018 * 218.02611 * 15 13 11 17 17 C 1.46241 * 114.28092 * 270.59669 * 16 15 13 18 18 N 1.50171 * 107.52830 * 58.40560 * 17 16 15 19 19 C 1.36937 * 120.53932 * 109.57463 * 18 17 16 20 20 H 1.08003 * 120.00412 * 146.83794 * 19 18 17 21 21 C 1.38814 * 119.99853 * 326.83065 * 19 18 17 22 22 N 1.31623 * 119.99680 * 0.22397 * 21 19 18 23 23 Si 1.86794 * 120.00162 * 180.22462 * 21 19 18 24 24 H 1.48498 * 109.47257 * 60.00490 * 23 21 19 25 25 H 1.48508 * 109.47149 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47191 * 300.00002 * 23 21 19 27 27 C 1.43434 * 118.92302 * 289.58626 * 18 17 16 28 28 C 1.54838 * 109.21033 * 240.63985 * 13 11 9 29 29 H 1.08997 * 109.47270 * 85.47387 * 1 2 3 30 30 H 1.08995 * 109.47286 * 205.47455 * 1 2 3 31 31 H 1.09005 * 109.46763 * 325.47022 * 1 2 3 32 32 H 1.08001 * 120.36186 * 359.97438 * 3 2 1 33 33 H 0.96702 * 113.99707 * 89.99586 * 5 4 3 34 34 H 1.07999 * 119.69003 * 180.26192 * 7 6 4 35 35 H 1.09004 * 109.47296 * 84.96918 * 12 11 9 36 36 H 1.09003 * 109.47345 * 204.97158 * 12 11 9 37 37 H 1.08999 * 109.47352 * 324.96763 * 12 11 9 38 38 H 1.09003 * 110.25429 * 337.00050 * 15 13 11 39 39 H 1.08999 * 110.25051 * 99.05392 * 15 13 11 40 40 H 1.09002 * 108.52437 * 31.83777 * 16 15 13 41 41 H 1.09003 * 108.53046 * 149.35262 * 16 15 13 42 42 H 1.09001 * 109.84629 * 177.91091 * 17 16 15 43 43 H 1.09000 * 109.84246 * 298.83163 * 17 16 15 44 44 H 0.97001 * 119.99938 * 179.97438 * 22 21 19 45 45 H 1.09006 * 108.15844 * 213.29264 * 27 18 17 46 46 H 1.08996 * 108.16040 * 330.06233 * 27 18 17 47 47 H 1.09008 * 109.36017 * 320.99807 * 28 13 11 48 48 H 1.09004 * 109.35587 * 80.58141 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6048 1.1473 -0.0005 5 8 4.3043 2.3078 -0.0011 6 7 4.2548 -0.0066 -0.0062 7 6 3.6205 -1.1601 -0.0007 8 6 2.2255 -1.2044 -0.0003 9 6 1.5171 -2.4994 0.0003 10 8 0.6664 -2.7265 0.8386 11 7 1.8134 -3.4300 -0.9285 12 6 2.9117 -3.2010 -1.8705 13 6 1.0372 -4.6706 -0.9960 14 1 0.2707 -4.6566 -0.2212 15 6 0.3774 -4.7678 -2.3410 16 6 -0.9982 -5.3707 -2.0753 17 6 -1.0324 -6.8321 -2.1164 18 7 -0.0608 -7.3364 -1.0884 19 6 -0.5093 -7.9448 0.0535 20 1 0.0676 -8.7384 0.5049 21 6 -1.7054 -7.5413 0.6310 22 7 -2.4106 -6.5770 0.0785 23 14 -2.3141 -8.3669 2.1921 24 1 -1.3132 -8.1808 3.2732 25 1 -3.6054 -7.7589 2.6025 26 1 -2.5081 -9.8177 1.9415 27 6 1.3446 -7.1702 -1.3219 28 6 1.9804 -5.8754 -0.7586 29 1 -0.3633 0.0811 -1.0244 30 1 -0.3633 -0.9277 0.4420 31 1 -0.3633 0.8467 0.5826 32 1 1.6935 2.1314 -0.0004 33 1 4.5076 2.6448 0.8822 34 1 4.1849 -2.0809 -0.0014 35 1 3.8525 -3.5079 -1.4133 36 1 2.7410 -3.7831 -2.7762 37 1 2.9590 -2.1417 -2.1230 38 1 0.2758 -3.7771 -2.7840 39 1 0.9540 -5.4189 -2.9979 40 1 -1.3353 -5.0440 -1.0915 41 1 -1.6945 -4.9870 -2.8209 42 1 -2.0364 -7.1855 -1.8814 43 1 -0.7396 -7.1813 -3.1066 44 1 -3.2466 -6.2953 0.4818 45 1 1.8647 -8.0226 -0.8846 46 1 1.5145 -7.1874 -2.3984 47 1 2.9322 -5.6930 -1.2576 48 1 2.1526 -5.9940 0.3112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948765882.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:01 Heat of formation + Delta-G solvation = -24.747305 kcal Electronic energy + Delta-G solvation = -30146.805675 eV Core-core repulsion = 26202.423390 eV Total energy + Delta-G solvation = -3944.382285 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.10293 -40.80266 -39.30644 -38.01194 -36.85258 -34.94241 -34.46457 -33.28495 -32.43036 -31.05725 -29.07229 -28.21614 -27.66442 -25.94528 -25.40018 -24.43783 -23.33526 -21.62109 -21.35901 -20.02687 -19.44330 -18.80108 -18.41410 -18.05368 -17.41687 -16.94542 -16.84619 -16.30772 -15.78507 -15.61527 -15.49216 -15.30902 -14.95067 -14.70115 -14.34466 -14.26408 -13.99566 -13.82994 -13.68436 -13.61465 -13.48083 -13.18153 -13.14342 -13.03150 -13.01184 -12.74159 -12.73718 -12.34189 -11.99388 -11.91835 -11.65352 -11.54580 -11.22518 -11.12796 -11.01971 -10.67274 -10.50234 -10.36355 -10.01298 -9.59416 -8.46096 -7.80268 -5.33739 -0.42877 0.03094 1.45013 1.47881 1.52429 1.54524 1.97259 2.34142 2.52761 2.67684 3.34106 3.37258 3.48886 3.56160 3.67347 3.92031 4.01915 4.14150 4.20496 4.20635 4.34113 4.42549 4.49939 4.56292 4.59401 4.63917 4.67086 4.68025 4.75675 4.85107 4.91463 4.93876 4.97164 5.10376 5.19165 5.23220 5.31286 5.34460 5.37775 5.49586 5.53054 5.68416 5.72093 5.86132 6.26168 6.38771 6.51684 6.52111 6.75594 7.10252 7.24508 7.94134 8.46027 9.22043 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017891 B = 0.003281 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.625364 B = 8531.166083 C = 9051.034133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.016 3.984 3 C -0.183 4.183 4 C 0.329 3.671 5 O -0.485 6.485 6 N -0.524 5.524 7 C 0.167 3.833 8 C -0.202 4.202 9 C 0.557 3.443 10 O -0.576 6.576 11 N -0.600 5.600 12 C 0.068 3.932 13 C 0.161 3.839 14 H 0.055 0.945 15 C -0.104 4.104 16 C -0.120 4.120 17 C 0.169 3.831 18 N -0.604 5.604 19 C -0.264 4.264 20 H 0.058 0.942 21 C -0.036 4.036 22 N -0.913 5.913 23 Si 0.955 3.045 24 H -0.287 1.287 25 H -0.296 1.296 26 H -0.275 1.275 27 C 0.157 3.843 28 C -0.138 4.138 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.175 0.825 33 H 0.425 0.575 34 H 0.180 0.820 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.035 0.965 42 H 0.058 0.942 43 H 0.025 0.975 44 H 0.245 0.755 45 H 0.031 0.969 46 H 0.055 0.945 47 H 0.090 0.910 48 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.627 16.209 -5.504 21.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.007 3.993 3 C -0.203 4.203 4 C 0.151 3.849 5 O -0.296 6.296 6 N -0.243 5.243 7 C 0.009 3.991 8 C -0.208 4.208 9 C 0.345 3.655 10 O -0.457 6.457 11 N -0.331 5.331 12 C -0.074 4.074 13 C 0.059 3.941 14 H 0.073 0.927 15 C -0.142 4.142 16 C -0.159 4.159 17 C 0.046 3.954 18 N -0.327 5.327 19 C -0.394 4.394 20 H 0.076 0.924 21 C -0.232 4.232 22 N -0.558 5.558 23 Si 0.784 3.216 24 H -0.213 1.213 25 H -0.222 1.222 26 H -0.201 1.201 27 C 0.029 3.971 28 C -0.180 4.180 29 H 0.109 0.891 30 H 0.079 0.921 31 H 0.120 0.880 32 H 0.192 0.808 33 H 0.288 0.712 34 H 0.197 0.803 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.054 0.946 42 H 0.077 0.923 43 H 0.043 0.957 44 H 0.054 0.946 45 H 0.050 0.950 46 H 0.073 0.927 47 H 0.109 0.891 48 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 12.899 16.157 -5.641 21.430 hybrid contribution -1.567 -0.446 1.818 2.441 sum 11.332 15.711 -3.824 19.745 Atomic orbital electron populations 1.21083 0.89231 1.04677 1.04099 1.20404 0.97536 0.90997 0.90317 1.22109 0.93475 0.99728 1.05030 1.19495 0.87502 0.85424 0.92443 1.84666 1.75647 1.33152 1.36162 1.67252 1.42191 0.98606 1.16295 1.22873 0.89367 0.95873 0.90986 1.20785 0.96037 0.93546 1.10409 1.18465 0.82052 0.84127 0.80890 1.90809 1.35555 1.80184 1.39127 1.48259 1.34363 1.17864 1.32599 1.22135 0.88822 1.02875 0.93562 1.21018 0.92934 0.81934 0.98240 0.92704 1.21292 0.96749 1.00481 0.95726 1.20770 0.95349 0.98192 1.01580 1.20071 0.94585 0.92556 0.88155 1.44253 1.00979 1.67928 1.19491 1.19296 1.05707 1.12377 1.02067 0.92393 1.25824 0.99823 0.97578 1.00011 1.70037 1.14884 1.30639 1.40281 0.85554 0.76808 0.78197 0.81064 1.21332 1.22224 1.20129 1.20491 0.84710 0.93868 0.98040 1.23134 0.98579 0.96247 1.00027 0.89079 0.92141 0.88046 0.80759 0.71217 0.80267 0.90329 0.88871 0.90661 0.91543 0.89929 0.92201 0.94648 0.92329 0.95670 0.94579 0.95041 0.92654 0.89130 0.95513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 9.75 71.24 0.69 -2.43 16 2 C 0.02 0.36 5.94 -19.43 -0.12 0.25 16 3 C -0.18 -3.25 9.74 22.43 0.22 -3.03 16 4 C 0.33 6.31 7.74 84.81 0.66 6.97 16 5 O -0.49 -7.05 13.55 -88.07 -1.19 -8.25 16 6 N -0.52 -11.71 10.37 -307.80 -3.19 -14.90 16 7 C 0.17 3.74 9.06 85.04 0.77 4.51 16 8 C -0.20 -5.36 4.77 -19.99 -0.10 -5.46 16 9 C 0.56 19.13 6.65 86.72 0.58 19.71 16 10 O -0.58 -26.11 14.43 -3.95 -0.06 -26.16 16 11 N -0.60 -18.33 2.62 -827.96 -2.17 -20.50 16 12 C 0.07 1.33 7.86 127.77 1.00 2.33 16 13 C 0.16 6.08 2.29 44.69 0.10 6.18 16 14 H 0.05 2.83 5.57 -2.39 -0.01 2.81 16 15 C -0.10 -3.58 4.42 29.51 0.13 -3.45 16 16 C -0.12 -5.18 4.98 28.35 0.14 -5.04 16 17 C 0.17 7.86 5.23 83.58 0.44 8.29 16 18 N -0.60 -29.36 2.59 -707.90 -1.83 -31.20 16 19 C -0.26 -14.50 9.59 84.03 0.81 -13.70 16 20 H 0.06 3.17 7.83 -2.91 -0.02 3.15 16 21 C -0.04 -2.01 5.28 84.86 0.45 -1.57 16 22 N -0.91 -52.94 8.88 21.65 0.19 -52.75 16 23 Si 0.95 46.28 29.55 68.60 2.03 48.30 16 24 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 25 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 26 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 27 C 0.16 6.18 5.18 87.58 0.45 6.64 16 28 C -0.14 -4.92 5.96 31.86 0.19 -4.73 16 29 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.06 1.94 5.65 -2.39 -0.01 1.93 16 31 H 0.10 1.77 8.13 -2.38 -0.02 1.75 16 32 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 33 H 0.43 1.81 9.06 -74.06 -0.67 1.13 16 34 H 0.18 3.34 6.68 -2.91 -0.02 3.32 16 35 H 0.08 1.22 7.25 -2.38 -0.02 1.21 16 36 H 0.09 1.59 7.30 -2.39 -0.02 1.58 16 37 H 0.07 1.34 6.38 -2.39 -0.02 1.33 16 38 H 0.07 2.07 7.93 -2.39 -0.02 2.05 16 39 H 0.08 2.49 6.28 -2.39 -0.01 2.47 16 40 H 0.06 3.19 5.13 -2.39 -0.01 3.18 16 41 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.06 3.14 6.16 -2.39 -0.01 3.12 16 43 H 0.03 1.04 8.13 -2.39 -0.02 1.02 16 44 H 0.24 14.14 8.31 -92.71 -0.77 13.37 16 45 H 0.03 1.24 8.00 -2.38 -0.02 1.22 16 46 H 0.06 1.87 6.88 -2.39 -0.02 1.85 16 47 H 0.09 2.44 7.14 -2.38 -0.02 2.43 16 48 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 Total: -1.00 -74.38 368.03 0.52 -73.86 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.33 Total: 16.10 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: 6.42 Total: 15.49 kcal Atomic # 7 Polarization: -112.34 SS G_CDS: -7.00 Total: -119.34 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -1.25 Total: -34.41 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.30 kcal Total: -74.38 0.52 -73.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948765882.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.116 kcal (2) G-P(sol) polarization free energy of solvation -74.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds