Wall clock time and date at job start Tue Mar 31 2020 18:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39835 * 126.45346 * 2 1 4 4 C 1.35454 * 107.86603 * 179.97438 * 3 2 1 5 5 N 1.35538 * 108.86840 * 359.73019 * 4 3 2 6 6 H 0.97005 * 125.67874 * 180.29831 * 5 4 3 7 7 C 1.37656 * 108.64252 * 0.43948 * 5 4 3 8 8 C 1.46675 * 126.23022 * 179.83218 * 7 5 4 9 9 O 1.21697 * 120.00007 * 283.78276 * 8 7 5 10 10 N 1.34773 * 120.00361 * 103.78592 * 8 7 5 11 11 C 1.47161 * 120.98537 * 354.87570 * 10 8 7 12 12 C 1.53295 * 108.37305 * 230.60195 * 11 10 8 13 13 O 1.42968 * 109.23324 * 307.65111 * 12 11 10 14 14 C 1.42898 * 114.20537 * 62.48601 * 13 12 11 15 15 C 1.52985 * 109.56488 * 57.48579 * 14 13 12 16 16 C 1.53194 * 109.35261 * 59.04571 * 15 14 13 17 17 N 1.46930 * 108.77484 * 54.57592 * 16 15 14 18 18 C 1.36940 * 120.64674 * 126.29474 * 17 16 15 19 19 H 1.07994 * 119.99672 * 332.37924 * 18 17 16 20 20 C 1.38806 * 119.99968 * 152.37376 * 18 17 16 21 21 N 1.31625 * 120.00091 * 143.84537 * 20 18 17 22 22 Si 1.86801 * 120.00395 * 323.84564 * 20 18 17 23 23 H 1.48496 * 109.47124 * 270.00385 * 22 20 18 24 24 H 1.48506 * 109.46725 * 29.99723 * 22 20 18 25 25 H 1.48493 * 109.47612 * 149.99918 * 22 20 18 26 26 C 1.46935 * 118.71111 * 306.56943 * 17 16 15 27 27 C 1.52757 * 109.00196 * 53.38876 * 26 17 16 28 28 C 1.47153 * 120.99256 * 174.88418 * 10 8 7 29 29 H 1.08997 * 109.47031 * 270.04084 * 1 2 3 30 30 H 1.09003 * 109.46847 * 30.04713 * 1 2 3 31 31 H 1.09001 * 109.46608 * 150.03800 * 1 2 3 32 32 H 1.08002 * 126.07185 * 359.92818 * 3 2 1 33 33 H 1.08000 * 125.57092 * 180.02562 * 4 3 2 34 34 H 1.09000 * 109.68008 * 110.88342 * 11 10 8 35 35 H 1.08998 * 109.68353 * 350.32077 * 11 10 8 36 36 H 1.09002 * 109.50561 * 187.72882 * 12 11 10 37 37 H 1.08990 * 109.51107 * 67.57980 * 12 11 10 38 38 H 1.09006 * 109.48507 * 299.08607 * 15 14 13 39 39 H 1.08995 * 109.51112 * 179.02658 * 15 14 13 40 40 H 1.08995 * 109.58875 * 294.78239 * 16 15 14 41 41 H 1.09008 * 109.69937 * 174.42704 * 16 15 14 42 42 H 0.96994 * 119.99480 * 355.17546 * 21 20 18 43 43 H 1.08996 * 109.58866 * 173.22352 * 26 17 16 44 44 H 1.09000 * 109.58363 * 293.65078 * 26 17 16 45 45 H 1.08994 * 109.56041 * 185.59042 * 27 26 17 46 46 H 1.08997 * 109.37533 * 65.56956 * 27 26 17 47 47 H 1.08995 * 109.67285 * 9.78249 * 28 10 8 48 48 H 1.09004 * 109.67651 * 249.24313 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6930 0.0006 5 7 3.6284 -0.6624 0.0070 6 1 4.4191 -1.2242 0.0128 7 6 2.3263 -1.1088 0.0006 8 6 1.8900 -2.5092 0.0008 9 8 1.9544 -3.1668 -1.0211 10 7 1.4177 -3.0677 1.1328 11 6 1.4338 -2.3295 2.4058 12 6 2.0781 -3.2213 3.4733 13 8 1.4216 -4.4912 3.4850 14 6 1.5395 -5.2230 2.2633 15 6 3.0183 -5.4315 1.9317 16 6 3.6921 -6.1963 3.0753 17 7 2.9463 -7.4389 3.3172 18 6 3.5870 -8.6492 3.3158 19 1 4.4846 -8.7842 2.7306 20 6 3.0829 -9.7022 4.0666 21 7 3.1623 -10.9339 3.6092 22 14 2.2918 -9.3716 5.7262 23 1 3.3266 -9.4351 6.7893 24 1 1.6720 -8.0221 5.7189 25 1 1.2480 -10.3943 5.9897 26 6 1.4985 -7.3584 3.5546 27 6 0.8495 -6.5806 2.4112 28 6 0.8706 -4.4338 1.1327 29 1 -0.3633 0.0007 1.0276 30 1 -0.3633 0.8896 -0.5146 31 1 -0.3632 -0.8904 -0.5133 32 1 2.0136 2.1549 -0.0011 33 1 4.4973 1.3254 0.0011 34 1 0.4137 -2.0831 2.7002 35 1 2.0150 -1.4145 2.2922 36 1 1.9766 -2.7500 4.4509 37 1 3.1344 -3.3597 3.2429 38 1 3.5029 -4.4632 1.8065 39 1 3.1072 -6.0047 1.0088 40 1 3.6858 -5.5848 3.9775 41 1 4.7203 -6.4345 2.8025 42 1 3.5090 -11.0989 2.7185 43 1 1.0785 -8.3633 3.5959 44 1 1.3108 -6.8427 4.4964 45 1 -0.2082 -6.4295 2.6268 46 1 0.9547 -7.1449 1.4846 47 1 1.0805 -4.9130 0.1765 48 1 -0.2063 -4.3979 1.2973 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949086725.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:37 Heat of formation + Delta-G solvation = 3.660667 kcal Electronic energy + Delta-G solvation = -30539.661988 eV Core-core repulsion = 26596.511565 eV Total energy + Delta-G solvation = -3943.150423 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.69294 -40.43936 -38.61304 -36.45362 -34.71808 -33.16419 -32.89427 -31.47667 -30.43659 -30.01468 -28.98258 -27.67269 -26.39652 -24.02257 -23.61329 -22.75989 -21.88096 -21.03933 -20.43093 -19.18443 -19.04848 -18.23080 -17.42543 -16.80918 -16.16325 -15.62905 -15.49367 -14.97445 -14.88522 -14.54299 -14.23782 -14.13459 -13.94798 -13.87928 -13.50690 -13.45526 -13.27866 -13.10983 -12.98215 -12.50881 -12.39093 -12.18317 -11.97173 -11.93307 -11.81989 -11.60508 -11.36260 -10.80455 -10.62923 -10.46581 -10.41285 -10.21986 -9.84937 -9.65489 -9.58119 -9.17840 -9.06313 -8.59040 -8.36917 -8.23659 -6.95171 -6.33774 -3.21537 1.60298 2.10995 2.51108 2.75419 3.21392 3.55764 3.61206 3.76761 3.83080 4.30593 4.64102 4.69302 4.75913 4.82010 4.85708 4.95323 5.01098 5.03263 5.05250 5.15869 5.21162 5.40536 5.44432 5.47268 5.52011 5.55920 5.65692 5.71282 5.75085 5.77584 5.85663 5.99935 6.08905 6.13257 6.15205 6.24997 6.34984 6.41752 6.54315 6.59726 6.68782 6.77196 6.80541 7.05146 7.10499 7.14680 7.38090 7.87933 8.09469 8.49022 9.06643 9.68957 10.29173 11.06763 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025521 B = 0.003129 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.890494 B = 8947.146098 C = 9059.166093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.116 4.116 3 C -0.201 4.201 4 C 0.009 3.991 5 N -0.530 5.530 6 H 0.420 0.580 7 C -0.036 4.036 8 C 0.590 3.410 9 O -0.529 6.529 10 N -0.596 5.596 11 C 0.077 3.923 12 C 0.044 3.956 13 O -0.358 6.358 14 C 0.118 3.882 15 C -0.152 4.152 16 C 0.152 3.848 17 N -0.598 5.598 18 C -0.362 4.362 19 H 0.062 0.938 20 C 0.004 3.996 21 N -0.899 5.899 22 Si 1.014 2.986 23 H -0.299 1.299 24 H -0.266 1.266 25 H -0.294 1.294 26 C 0.150 3.850 27 C -0.123 4.123 28 C 0.088 3.912 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.141 0.859 33 H 0.170 0.830 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.070 0.930 40 H 0.022 0.978 41 H 0.054 0.946 42 H 0.266 0.734 43 H 0.065 0.935 44 H 0.039 0.961 45 H 0.064 0.936 46 H 0.077 0.923 47 H 0.101 0.899 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.644 25.696 -4.296 26.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C -0.226 4.226 4 C -0.126 4.126 5 N -0.125 5.125 6 H 0.257 0.743 7 C -0.150 4.150 8 C 0.376 3.624 9 O -0.404 6.404 10 N -0.329 5.329 11 C -0.046 4.046 12 C -0.033 4.033 13 O -0.276 6.276 14 C 0.078 3.922 15 C -0.191 4.191 16 C 0.026 3.974 17 N -0.321 5.321 18 C -0.489 4.489 19 H 0.080 0.920 20 C -0.200 4.200 21 N -0.536 5.536 22 Si 0.843 3.157 23 H -0.227 1.227 24 H -0.192 1.192 25 H -0.221 1.221 26 C 0.024 3.976 27 C -0.162 4.162 28 C -0.034 4.034 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.159 0.841 33 H 0.187 0.813 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.121 0.879 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.040 0.960 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.057 0.943 45 H 0.082 0.918 46 H 0.095 0.905 47 H 0.119 0.881 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.231 24.368 -3.391 24.964 hybrid contribution 1.383 0.825 -1.546 2.232 sum -2.847 25.193 -4.937 25.829 Atomic orbital electron populations 1.20211 0.89782 1.02373 1.01884 1.19789 0.95378 0.90928 1.06330 1.20699 0.91734 0.98541 1.11597 1.21933 0.99564 0.82687 1.08401 1.41820 1.06778 1.07215 1.56660 0.74315 1.19920 0.84660 0.93287 1.17174 1.17193 0.77623 0.84443 0.83158 1.90859 1.54804 1.62675 1.32100 1.48044 1.61180 1.15667 1.08047 1.22481 1.02738 0.95760 0.83664 1.22916 0.96710 0.84878 0.98837 1.88051 1.74895 1.29347 1.35341 1.21734 0.95597 0.91644 0.83190 1.22498 0.95174 0.99796 1.01664 1.20802 0.94653 0.88113 0.93846 1.44294 1.01842 1.02209 1.83800 1.20022 1.13232 0.87848 1.27829 0.92046 1.26121 0.98865 0.92096 1.02913 1.70899 1.41381 1.21647 1.19690 0.84664 0.76543 0.76218 0.78287 1.22696 1.19154 1.22088 1.21207 0.84138 0.97914 0.94324 1.22028 0.98714 0.92796 1.02693 1.22534 0.98098 0.81029 1.01708 0.91521 0.91386 0.92242 0.84128 0.81293 0.90370 0.88977 0.87914 0.92420 0.93151 0.91163 0.96036 0.92780 0.92381 0.91682 0.94275 0.91773 0.90493 0.88121 0.90549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.75 10.20 36.01 0.37 -0.38 16 2 C -0.12 -1.19 6.06 -104.16 -0.63 -1.82 16 3 C -0.20 -1.70 10.76 -39.98 -0.43 -2.13 16 4 C 0.01 0.06 11.89 -16.91 -0.20 -0.14 16 5 N -0.53 -4.77 6.10 -9.39 -0.06 -4.82 16 6 H 0.42 3.08 8.96 -40.82 -0.37 2.71 16 7 C -0.04 -0.41 4.98 -81.98 -0.41 -0.82 16 8 C 0.59 8.21 7.20 -12.86 -0.09 8.12 16 9 O -0.53 -9.37 16.58 5.19 0.09 -9.28 16 10 N -0.60 -7.53 2.52 -173.84 -0.44 -7.96 16 11 C 0.08 0.78 6.51 -3.53 -0.02 0.76 16 12 C 0.04 0.52 6.60 37.31 0.25 0.76 16 13 O -0.36 -5.55 9.01 -35.23 -0.32 -5.86 16 14 C 0.12 1.89 0.68 -90.50 -0.06 1.82 16 15 C -0.15 -2.63 4.33 -26.64 -0.12 -2.74 16 16 C 0.15 3.12 6.29 -3.71 -0.02 3.09 16 17 N -0.60 -14.41 2.72 -172.57 -0.47 -14.88 16 18 C -0.36 -10.18 9.70 -15.06 -0.15 -10.32 16 19 H 0.06 1.86 8.06 -52.49 -0.42 1.44 16 20 C 0.00 0.12 4.82 -17.43 -0.08 0.03 16 21 N -0.90 -27.64 13.70 55.49 0.76 -26.88 16 22 Si 1.01 25.39 27.00 -169.99 -4.59 20.80 16 23 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 24 H -0.27 -6.16 4.73 56.52 0.27 -5.90 16 25 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 26 C 0.15 3.28 4.11 -3.93 -0.02 3.27 16 27 C -0.12 -2.18 5.09 -26.85 -0.14 -2.31 16 28 C 0.09 1.24 5.31 -3.56 -0.02 1.22 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.60 7.96 -51.93 -0.41 0.18 16 32 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.84 6.38 -51.93 -0.33 0.51 16 36 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.70 6.29 -51.93 -0.33 0.38 16 38 H 0.05 0.79 6.16 -51.93 -0.32 0.47 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.02 0.44 7.83 -51.93 -0.41 0.03 16 41 H 0.05 1.13 7.93 -51.92 -0.41 0.72 16 42 H 0.27 8.13 8.73 -40.82 -0.36 7.77 16 43 H 0.06 1.54 5.81 -51.93 -0.30 1.23 16 44 H 0.04 0.87 6.29 -51.93 -0.33 0.55 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 47 H 0.10 1.56 7.05 -51.93 -0.37 1.19 16 48 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 369.78 15.07 5.57 5.57 Total: -1.00 -34.24 369.78 -8.73 -42.97 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -7.51 Total: 1.94 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -1.77 Total: -1.59 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: -0.20 Total: -54.54 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.23 Total: -15.15 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -4.59 Total: 20.80 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.24 -8.73 -42.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949086725.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.631 kcal (2) G-P(sol) polarization free energy of solvation -34.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds