Wall clock time and date at job start Tue Mar 31 2020 18:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39835 * 126.45346 * 2 1 4 4 C 1.35454 * 107.86603 * 179.97438 * 3 2 1 5 5 N 1.35538 * 108.86840 * 359.73019 * 4 3 2 6 6 H 0.97005 * 125.67874 * 180.29831 * 5 4 3 7 7 C 1.37656 * 108.64252 * 0.43948 * 5 4 3 8 8 C 1.46675 * 126.23022 * 179.83218 * 7 5 4 9 9 O 1.21697 * 120.00007 * 283.78276 * 8 7 5 10 10 N 1.34773 * 120.00361 * 103.78592 * 8 7 5 11 11 C 1.47161 * 120.98537 * 354.87570 * 10 8 7 12 12 C 1.53295 * 108.37305 * 230.60195 * 11 10 8 13 13 O 1.42968 * 109.23324 * 307.65111 * 12 11 10 14 14 C 1.42898 * 114.20537 * 62.48601 * 13 12 11 15 15 C 1.52985 * 109.56488 * 57.48579 * 14 13 12 16 16 C 1.53194 * 109.35261 * 59.04571 * 15 14 13 17 17 N 1.46930 * 108.77484 * 54.57592 * 16 15 14 18 18 C 1.36940 * 120.64674 * 126.29474 * 17 16 15 19 19 H 1.07994 * 119.99672 * 332.37924 * 18 17 16 20 20 C 1.38806 * 119.99968 * 152.37376 * 18 17 16 21 21 N 1.31625 * 120.00091 * 143.84537 * 20 18 17 22 22 Si 1.86801 * 120.00395 * 323.84564 * 20 18 17 23 23 H 1.48496 * 109.47124 * 270.00385 * 22 20 18 24 24 H 1.48506 * 109.46725 * 29.99723 * 22 20 18 25 25 H 1.48493 * 109.47612 * 149.99918 * 22 20 18 26 26 C 1.46935 * 118.71111 * 306.56943 * 17 16 15 27 27 C 1.52757 * 109.00196 * 53.38876 * 26 17 16 28 28 C 1.47153 * 120.99256 * 174.88418 * 10 8 7 29 29 H 1.08997 * 109.47031 * 270.04084 * 1 2 3 30 30 H 1.09003 * 109.46847 * 30.04713 * 1 2 3 31 31 H 1.09001 * 109.46608 * 150.03800 * 1 2 3 32 32 H 1.08002 * 126.07185 * 359.92818 * 3 2 1 33 33 H 1.08000 * 125.57092 * 180.02562 * 4 3 2 34 34 H 1.09000 * 109.68008 * 110.88342 * 11 10 8 35 35 H 1.08998 * 109.68353 * 350.32077 * 11 10 8 36 36 H 1.09002 * 109.50561 * 187.72882 * 12 11 10 37 37 H 1.08990 * 109.51107 * 67.57980 * 12 11 10 38 38 H 1.09006 * 109.48507 * 299.08607 * 15 14 13 39 39 H 1.08995 * 109.51112 * 179.02658 * 15 14 13 40 40 H 1.08995 * 109.58875 * 294.78239 * 16 15 14 41 41 H 1.09008 * 109.69937 * 174.42704 * 16 15 14 42 42 H 0.96994 * 119.99480 * 355.17546 * 21 20 18 43 43 H 1.08996 * 109.58866 * 173.22352 * 26 17 16 44 44 H 1.09000 * 109.58363 * 293.65078 * 26 17 16 45 45 H 1.08994 * 109.56041 * 185.59042 * 27 26 17 46 46 H 1.08997 * 109.37533 * 65.56956 * 27 26 17 47 47 H 1.08995 * 109.67285 * 9.78249 * 28 10 8 48 48 H 1.09004 * 109.67651 * 249.24313 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6930 0.0006 5 7 3.6284 -0.6624 0.0070 6 1 4.4191 -1.2242 0.0128 7 6 2.3263 -1.1088 0.0006 8 6 1.8900 -2.5092 0.0008 9 8 1.9544 -3.1668 -1.0211 10 7 1.4177 -3.0677 1.1328 11 6 1.4338 -2.3295 2.4058 12 6 2.0781 -3.2213 3.4733 13 8 1.4216 -4.4912 3.4850 14 6 1.5395 -5.2230 2.2633 15 6 3.0183 -5.4315 1.9317 16 6 3.6921 -6.1963 3.0753 17 7 2.9463 -7.4389 3.3172 18 6 3.5870 -8.6492 3.3158 19 1 4.4846 -8.7842 2.7306 20 6 3.0829 -9.7022 4.0666 21 7 3.1623 -10.9339 3.6092 22 14 2.2918 -9.3716 5.7262 23 1 3.3266 -9.4351 6.7893 24 1 1.6720 -8.0221 5.7189 25 1 1.2480 -10.3943 5.9897 26 6 1.4985 -7.3584 3.5546 27 6 0.8495 -6.5806 2.4112 28 6 0.8706 -4.4338 1.1327 29 1 -0.3633 0.0007 1.0276 30 1 -0.3633 0.8896 -0.5146 31 1 -0.3632 -0.8904 -0.5133 32 1 2.0136 2.1549 -0.0011 33 1 4.4973 1.3254 0.0011 34 1 0.4137 -2.0831 2.7002 35 1 2.0150 -1.4145 2.2922 36 1 1.9766 -2.7500 4.4509 37 1 3.1344 -3.3597 3.2429 38 1 3.5029 -4.4632 1.8065 39 1 3.1072 -6.0047 1.0088 40 1 3.6858 -5.5848 3.9775 41 1 4.7203 -6.4345 2.8025 42 1 3.5090 -11.0989 2.7185 43 1 1.0785 -8.3633 3.5959 44 1 1.3108 -6.8427 4.4964 45 1 -0.2082 -6.4295 2.6268 46 1 0.9547 -7.1449 1.4846 47 1 1.0805 -4.9130 0.1765 48 1 -0.2063 -4.3979 1.2973 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949086725.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:36 Heat of formation + Delta-G solvation = -19.520280 kcal Electronic energy + Delta-G solvation = -30540.667189 eV Core-core repulsion = 26596.511565 eV Total energy + Delta-G solvation = -3944.155624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.48470 -41.51038 -39.78262 -37.99626 -35.87182 -34.83878 -33.60613 -33.20736 -32.01471 -30.82991 -30.20076 -28.67280 -27.43059 -25.57578 -24.92905 -24.08426 -23.23188 -22.10176 -21.45338 -20.54443 -19.85983 -19.44615 -19.04627 -17.85036 -17.29278 -17.02409 -16.49895 -16.25784 -16.11471 -15.85051 -15.78041 -15.24711 -15.18553 -15.04125 -14.85849 -14.73262 -14.28489 -14.00598 -13.91326 -13.67327 -13.60942 -13.39323 -13.20870 -13.14737 -13.11785 -12.88271 -12.50312 -12.44819 -12.23851 -11.99481 -11.78480 -11.60729 -11.55705 -11.23570 -11.07107 -10.91301 -10.42550 -9.69449 -9.66510 -9.06569 -9.01861 -8.60003 -5.44180 0.84565 1.19399 1.54092 1.57035 1.73641 1.79029 1.97018 2.49824 2.59849 2.69916 2.95840 3.35683 3.47486 3.62369 3.70345 3.79459 3.93934 4.12988 4.20229 4.23233 4.26590 4.27372 4.36745 4.43704 4.51293 4.58011 4.59673 4.66591 4.76570 4.79674 4.81787 4.84889 4.86881 4.91257 5.01015 5.05868 5.08057 5.15119 5.15721 5.22363 5.38486 5.42456 5.81911 5.88869 6.02518 6.12815 6.22917 6.26170 6.54992 6.86458 6.90401 7.62319 8.14562 8.77410 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025521 B = 0.003129 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.890494 B = 8947.146098 C = 9059.166093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.117 4.117 3 C -0.216 4.216 4 C 0.027 3.973 5 N -0.531 5.531 6 H 0.425 0.575 7 C -0.072 4.072 8 C 0.591 3.409 9 O -0.579 6.579 10 N -0.593 5.593 11 C 0.083 3.917 12 C 0.039 3.961 13 O -0.371 6.371 14 C 0.128 3.872 15 C -0.139 4.139 16 C 0.153 3.847 17 N -0.612 5.612 18 C -0.353 4.353 19 H 0.024 0.976 20 C -0.046 4.046 21 N -0.935 5.935 22 Si 1.064 2.936 23 H -0.297 1.297 24 H -0.235 1.235 25 H -0.296 1.296 26 C 0.148 3.852 27 C -0.119 4.119 28 C 0.095 3.905 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.161 0.839 33 H 0.206 0.794 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.133 0.867 37 H 0.051 0.949 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.036 0.964 41 H 0.038 0.962 42 H 0.252 0.748 43 H 0.043 0.957 44 H 0.046 0.954 45 H 0.094 0.906 46 H 0.064 0.936 47 H 0.080 0.920 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.702 29.969 -2.847 30.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 C -0.239 4.239 4 C -0.108 4.108 5 N -0.126 5.126 6 H 0.263 0.737 7 C -0.186 4.186 8 C 0.379 3.621 9 O -0.459 6.459 10 N -0.325 5.325 11 C -0.039 4.039 12 C -0.038 4.038 13 O -0.290 6.290 14 C 0.088 3.912 15 C -0.179 4.179 16 C 0.027 3.973 17 N -0.337 5.337 18 C -0.482 4.482 19 H 0.041 0.959 20 C -0.244 4.244 21 N -0.574 5.574 22 Si 0.888 3.112 23 H -0.225 1.225 24 H -0.159 1.159 25 H -0.223 1.223 26 C 0.023 3.977 27 C -0.158 4.158 28 C -0.027 4.027 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.058 0.942 32 H 0.179 0.821 33 H 0.223 0.777 34 H 0.114 0.886 35 H 0.126 0.874 36 H 0.150 0.850 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.112 0.888 46 H 0.082 0.918 47 H 0.099 0.901 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.293 28.699 -1.923 29.246 hybrid contribution 1.810 -0.385 -2.057 2.767 sum -3.483 28.314 -3.980 28.804 Atomic orbital electron populations 1.20253 0.89222 1.02090 1.02701 1.20092 0.96028 0.91151 1.05281 1.21016 0.91846 0.99057 1.12016 1.22589 1.00667 0.82102 1.05407 1.41909 1.06198 1.07993 1.56513 0.73722 1.19648 0.86087 0.92035 1.20789 1.17576 0.76674 0.85266 0.82550 1.90827 1.56892 1.64224 1.33907 1.48107 1.60405 1.15082 1.08862 1.22603 1.04006 0.95594 0.81731 1.23198 0.96098 0.83596 1.00919 1.88020 1.75400 1.30963 1.34604 1.21448 0.93988 0.91343 0.84419 1.22321 0.96706 0.99729 0.99116 1.20868 0.93907 0.87067 0.95410 1.44384 1.03156 1.02008 1.84183 1.19869 1.12144 0.89779 1.26426 0.95856 1.27229 0.99993 0.91558 1.05652 1.71015 1.44153 1.22921 1.19310 0.84010 0.75900 0.77546 0.73705 1.22474 1.15904 1.22303 1.21211 0.82778 0.97514 0.96185 1.21906 1.00323 0.93245 1.00320 1.22308 0.98968 0.81695 0.99772 0.90101 0.90008 0.94162 0.82116 0.77718 0.88580 0.87382 0.84975 0.93118 0.91233 0.93478 0.94607 0.94306 0.93939 0.93822 0.93606 0.88782 0.91757 0.90106 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.30 10.20 71.24 0.73 -0.58 16 2 C -0.12 -2.10 6.06 -19.57 -0.12 -2.22 16 3 C -0.22 -2.89 10.76 22.01 0.24 -2.65 16 4 C 0.03 0.30 11.89 83.48 0.99 1.30 16 5 N -0.53 -8.29 6.10 -183.62 -1.12 -9.41 16 6 H 0.42 5.45 8.96 -92.70 -0.83 4.62 16 7 C -0.07 -1.52 4.98 40.35 0.20 -1.32 16 8 C 0.59 16.02 7.20 86.45 0.62 16.64 16 9 O -0.58 -20.95 16.58 -4.34 -0.07 -21.02 16 10 N -0.59 -13.89 2.52 -822.12 -2.07 -15.97 16 11 C 0.08 1.39 6.51 86.35 0.56 1.96 16 12 C 0.04 0.76 6.60 72.08 0.48 1.24 16 13 O -0.37 -10.29 9.01 -148.98 -1.34 -11.64 16 14 C 0.13 3.88 0.68 -10.71 -0.01 3.88 16 15 C -0.14 -4.78 4.33 30.65 0.13 -4.64 16 16 C 0.15 6.23 6.29 86.36 0.54 6.77 16 17 N -0.61 -29.72 2.72 -699.90 -1.90 -31.63 16 18 C -0.35 -20.57 9.70 84.03 0.82 -19.75 16 19 H 0.02 1.51 8.06 -2.91 -0.02 1.49 16 20 C -0.05 -2.74 4.82 84.86 0.41 -2.33 16 21 N -0.93 -59.61 13.70 21.65 0.30 -59.32 16 22 Si 1.06 51.72 27.00 68.60 1.85 53.58 16 23 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 24 H -0.23 -10.14 4.73 99.48 0.47 -9.67 16 25 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 26 C 0.15 6.33 4.11 86.22 0.35 6.69 16 27 C -0.12 -4.07 5.09 30.52 0.16 -3.91 16 28 C 0.10 2.55 5.31 86.34 0.46 3.01 16 29 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.04 0.76 7.96 -2.39 -0.02 0.74 16 32 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 33 H 0.21 0.68 8.06 -2.91 -0.02 0.65 16 34 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.11 1.55 6.38 -2.39 -0.02 1.54 16 36 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.05 1.08 6.29 -2.39 -0.02 1.06 16 38 H 0.07 2.10 6.16 -2.38 -0.01 2.09 16 39 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.04 1.38 7.83 -2.39 -0.02 1.36 16 41 H 0.04 1.66 7.93 -2.38 -0.02 1.64 16 42 H 0.25 16.23 8.73 -92.71 -0.81 15.42 16 43 H 0.04 2.04 5.81 -2.39 -0.01 2.03 16 44 H 0.05 1.92 6.29 -2.39 -0.02 1.90 16 45 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 46 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 47 H 0.08 2.52 7.05 -2.39 -0.02 2.51 16 48 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -77.79 369.78 2.07 -75.72 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -0.13 Total: 15.60 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 6.56 Total: 4.07 kcal Atomic # 7 Polarization: -111.51 SS G_CDS: -4.80 Total: -116.31 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -1.41 Total: -32.66 kcal Atomic # 14 Polarization: 51.72 SS G_CDS: 1.85 Total: 53.58 kcal Total: -77.79 2.07 -75.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949086725.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.201 kcal (2) G-P(sol) polarization free energy of solvation -77.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds