Wall clock time and date at job start Tue Mar 31 2020 17:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38350 * 119.46326 * 2 1 4 4 C 1.38357 * 119.30391 * 179.76783 * 3 2 1 5 5 C 1.50699 * 120.85659 * 180.25400 * 4 3 2 6 6 C 1.40028 * 118.28525 * 0.45663 * 4 3 2 7 7 C 1.47840 * 120.55565 * 179.79873 * 6 4 3 8 8 O 1.21553 * 120.00152 * 269.71916 * 7 6 4 9 9 N 1.34777 * 119.99500 * 89.99472 * 7 6 4 10 10 C 1.46505 * 119.99724 * 179.72331 * 9 7 6 11 11 C 1.52999 * 109.47192 * 180.02562 * 10 9 7 12 12 H 1.09007 * 110.88064 * 305.69776 * 11 10 9 13 13 C 1.54906 * 111.00770 * 69.57914 * 11 10 9 14 14 N 1.47425 * 104.83337 * 155.08820 * 13 11 10 15 15 C 1.36932 * 125.65063 * 155.90638 * 14 13 11 16 16 H 1.07998 * 119.99881 * 0.02562 * 15 14 13 17 17 C 1.38814 * 120.00242 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99511 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00208 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47203 * 90.00174 * 19 17 15 21 21 H 1.48497 * 109.47297 * 210.00406 * 19 17 15 22 22 H 1.48503 * 109.47306 * 330.00301 * 19 17 15 23 23 C 1.47018 * 108.70057 * 335.86970 * 14 13 11 24 24 C 1.54375 * 107.29245 * 1.09620 * 23 14 13 25 25 H 1.09003 * 110.70228 * 263.79440 * 24 23 14 26 26 O 1.42891 * 110.76028 * 140.50439 * 24 23 14 27 27 C 1.39519 * 118.88272 * 359.52875 * 6 4 3 28 28 C 1.50693 * 119.71575 * 180.23172 * 27 6 4 29 29 N 1.31695 * 120.56491 * 0.25082 * 27 6 4 30 30 H 1.09004 * 109.46748 * 270.02055 * 1 2 3 31 31 H 1.09001 * 109.47079 * 30.01613 * 1 2 3 32 32 H 1.08997 * 109.47713 * 150.01571 * 1 2 3 33 33 H 1.07998 * 120.34559 * 0.02708 * 3 2 1 34 34 H 1.08996 * 109.47138 * 270.20678 * 5 4 3 35 35 H 1.08998 * 109.46972 * 30.20384 * 5 4 3 36 36 H 1.08996 * 109.46921 * 150.20471 * 5 4 3 37 37 H 0.97000 * 120.00483 * 359.72763 * 9 7 6 38 38 H 1.09003 * 109.46699 * 299.99993 * 10 9 7 39 39 H 1.08993 * 109.47199 * 60.00006 * 10 9 7 40 40 H 1.09004 * 110.36362 * 273.92447 * 13 11 10 41 41 H 1.08998 * 110.36882 * 36.24777 * 13 11 10 42 42 H 0.97008 * 119.99508 * 180.02562 * 18 17 15 43 43 H 1.09006 * 109.88132 * 120.48044 * 23 14 13 44 44 H 1.08998 * 109.88765 * 241.48791 * 23 14 13 45 45 H 0.96704 * 114.00311 * 66.47923 * 26 24 23 46 46 H 1.08999 * 109.47407 * 89.99599 * 28 27 6 47 47 H 1.08997 * 109.47429 * 209.99580 * 28 27 6 48 48 H 1.08997 * 109.47487 * 329.99899 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2007 0.0049 5 6 4.3475 2.4923 0.0108 6 6 4.2312 -0.0342 -0.0001 7 6 5.7083 -0.0968 0.0002 8 8 6.3158 -0.1232 -1.0523 9 7 6.3809 -0.1303 1.1677 10 6 7.8444 -0.1985 1.1681 11 6 8.3533 -0.2255 2.6107 12 1 7.9612 0.6195 3.1769 13 6 7.9996 -1.5673 3.2993 14 7 9.0074 -1.7222 4.3641 15 6 8.8572 -2.4677 5.5028 16 1 7.9377 -3.0063 5.6783 17 6 9.8872 -2.5321 6.4313 18 7 11.0079 -1.8760 6.2172 19 14 9.6820 -3.5484 7.9850 20 1 10.1537 -4.9343 7.7358 21 1 10.4802 -2.9435 9.0813 22 1 8.2488 -3.5756 8.3731 23 6 10.2008 -0.9444 4.0004 24 6 9.9040 -0.2517 2.6531 25 1 10.3026 -0.8358 1.8235 26 8 10.4327 1.0757 2.6387 27 6 3.4715 -1.2044 0.0002 28 6 4.1625 -2.5436 0.0001 29 7 2.1557 -1.1487 0.0002 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3634 -0.8901 -0.5136 33 1 1.6444 2.1381 0.0004 34 1 4.5352 2.8080 -1.0154 35 1 3.7718 3.2600 0.5276 36 1 5.2972 2.3428 0.5244 37 1 5.8961 -0.1093 2.0076 38 1 8.1660 -1.1036 0.6527 39 1 8.2489 0.6745 0.6561 40 1 6.9986 -1.5212 3.7283 41 1 8.0707 -2.3894 2.5872 42 1 11.7279 -1.9213 6.8658 43 1 10.4020 -0.1945 4.7656 44 1 11.0591 -1.6084 3.8977 45 1 11.3987 1.1147 2.6639 46 1 4.3296 -2.8664 1.0278 47 1 3.5381 -3.2747 -0.5133 48 1 5.1199 -2.4585 -0.5140 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958271344.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:18 Heat of formation + Delta-G solvation = -38.029206 kcal Electronic energy + Delta-G solvation = -28834.052932 eV Core-core repulsion = 24889.094701 eV Total energy + Delta-G solvation = -3944.958231 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.05404 -39.32049 -38.18781 -35.20444 -34.66832 -34.49663 -33.98382 -32.22081 -29.96131 -29.31165 -28.17600 -27.79217 -27.28087 -25.49728 -23.71137 -22.47693 -21.41647 -20.73732 -20.25293 -19.87618 -17.83884 -17.30666 -16.99187 -16.69408 -16.04192 -15.42282 -15.17232 -14.99489 -14.79120 -14.50581 -14.12997 -13.87947 -13.60689 -13.48863 -13.47690 -13.30669 -13.11228 -12.92398 -12.68990 -12.52123 -12.48558 -12.27853 -12.05296 -11.99609 -11.91143 -11.51643 -11.27031 -11.01915 -10.84596 -10.63775 -10.36892 -10.08358 -9.90753 -9.85819 -9.73251 -9.59061 -9.25384 -9.05300 -9.02212 -8.69367 -6.94130 -5.79338 -3.13909 0.64791 0.94264 2.47343 3.08004 3.35724 3.38250 3.40816 3.42702 3.90030 4.26682 4.30082 4.40286 4.56954 4.70107 4.77423 4.96502 5.03886 5.09123 5.13032 5.16570 5.24737 5.27012 5.28613 5.39284 5.40835 5.46186 5.46413 5.57069 5.63071 5.73355 5.80980 5.85931 5.89692 5.92407 5.98532 5.99320 6.16314 6.29175 6.36833 6.39104 6.49621 6.77090 7.35237 7.42352 7.45665 7.71110 7.71292 8.10325 8.14718 8.16066 9.12210 9.72779 10.36725 11.32249 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013947 B = 0.002798 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.153270 B =10003.019189 C =11161.317637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.147 3.853 3 C -0.185 4.185 4 C 0.000 4.000 5 C -0.124 4.124 6 C -0.188 4.188 7 C 0.571 3.429 8 O -0.533 6.533 9 N -0.715 5.715 10 C 0.132 3.868 11 C -0.108 4.108 12 H 0.089 0.911 13 C 0.142 3.858 14 N -0.602 5.602 15 C -0.231 4.231 16 H 0.080 0.920 17 C -0.007 4.007 18 N -0.922 5.922 19 Si 0.914 3.086 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.152 3.848 24 C 0.083 3.917 25 H 0.057 0.943 26 O -0.567 6.567 27 C 0.177 3.823 28 C -0.114 4.114 29 N -0.489 5.489 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.139 0.861 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.403 0.597 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.042 0.958 41 H 0.024 0.976 42 H 0.253 0.747 43 H 0.057 0.943 44 H 0.046 0.954 45 H 0.376 0.624 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.584 7.198 -12.872 21.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.010 3.990 3 C -0.204 4.204 4 C -0.008 4.008 5 C -0.180 4.180 6 C -0.193 4.193 7 C 0.356 3.644 8 O -0.410 6.410 9 N -0.365 5.365 10 C 0.009 3.991 11 C -0.127 4.127 12 H 0.108 0.892 13 C 0.015 3.985 14 N -0.329 5.329 15 C -0.359 4.359 16 H 0.097 0.903 17 C -0.204 4.204 18 N -0.570 5.570 19 Si 0.744 3.256 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.206 1.206 23 C 0.026 3.974 24 C 0.023 3.977 25 H 0.075 0.925 26 O -0.371 6.371 27 C 0.039 3.961 28 C -0.171 4.171 29 N -0.200 5.200 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.157 0.843 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.238 0.762 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.060 0.940 41 H 0.042 0.958 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.223 0.777 46 H 0.106 0.894 47 H 0.102 0.898 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.095 6.511 -13.442 21.958 hybrid contribution 0.842 0.119 1.331 1.580 sum -15.253 6.630 -12.111 20.574 Atomic orbital electron populations 1.20755 0.88515 1.03624 1.03350 1.21418 0.97137 0.88094 0.92393 1.21734 0.93620 0.99507 1.05574 1.20322 0.93820 0.94423 0.92196 1.20925 1.00133 0.93368 1.03587 1.20664 0.94505 0.94655 1.09489 1.17958 0.86205 0.76131 0.84150 1.90808 1.69312 1.49592 1.31265 1.46108 1.08135 1.73975 1.08301 1.21437 0.78180 1.02396 0.97118 1.22608 0.95397 1.00596 0.94130 0.89245 1.21613 0.93711 0.92377 0.90779 1.44300 1.12314 1.56454 1.19857 1.19061 1.00264 1.21765 0.94794 0.90256 1.24819 0.96237 1.00325 0.98996 1.69942 1.05352 1.45498 1.36177 0.86091 0.77358 0.79546 0.82590 1.21528 1.21627 1.20623 1.21837 0.90129 0.94608 0.90798 1.23120 0.92262 0.83164 0.99166 0.92506 1.86415 1.25724 1.27618 1.97388 1.21313 0.88857 0.94645 0.91330 1.20856 1.00177 0.92092 1.03959 1.67385 1.08821 1.29107 1.14647 0.90059 0.90551 0.90262 0.84300 0.89809 0.90308 0.90696 0.76195 0.91130 0.91017 0.93974 0.95850 0.93660 0.92443 0.93588 0.77679 0.89406 0.89778 0.90258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.16 36.01 0.37 -0.33 16 2 C 0.15 1.49 6.78 -82.51 -0.56 0.93 16 3 C -0.18 -1.71 9.43 -39.50 -0.37 -2.08 16 4 C 0.00 0.00 5.95 -103.91 -0.62 -0.61 16 5 C -0.12 -1.11 9.69 36.01 0.35 -0.76 16 6 C -0.19 -2.38 5.65 -104.82 -0.59 -2.97 16 7 C 0.57 8.00 4.35 -12.33 -0.05 7.94 16 8 O -0.53 -9.23 17.10 5.32 0.09 -9.14 16 9 N -0.71 -9.23 5.45 -61.25 -0.33 -9.57 16 10 C 0.13 1.90 5.12 -4.04 -0.02 1.88 16 11 C -0.11 -1.79 2.79 -88.47 -0.25 -2.04 16 12 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 13 C 0.14 2.72 6.56 -2.53 -0.02 2.71 16 14 N -0.60 -14.81 3.39 -170.04 -0.58 -15.39 16 15 C -0.23 -6.26 10.28 -15.06 -0.15 -6.42 16 16 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 17 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 18 N -0.92 -26.49 10.31 55.49 0.57 -25.92 16 19 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C 0.15 3.53 5.15 -3.04 -0.02 3.52 16 24 C 0.08 1.50 3.80 -24.87 -0.09 1.41 16 25 H 0.06 0.96 8.04 -51.93 -0.42 0.54 16 26 O -0.57 -9.54 13.39 -35.23 -0.47 -10.02 16 27 C 0.18 2.23 6.82 -82.18 -0.56 1.67 16 28 C -0.11 -1.27 9.79 36.00 0.35 -0.92 16 29 N -0.49 -6.03 10.17 -5.42 -0.06 -6.08 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.35 8.07 -51.93 -0.42 -0.07 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.53 8.10 -51.93 -0.42 0.11 16 36 H 0.07 0.75 7.19 -51.93 -0.37 0.38 16 37 H 0.40 4.70 8.42 -40.82 -0.34 4.36 16 38 H 0.07 1.05 8.03 -51.93 -0.42 0.63 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.02 0.45 7.96 -51.93 -0.41 0.04 16 42 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.06 1.52 7.30 -51.93 -0.38 1.14 16 44 H 0.05 1.18 7.50 -51.93 -0.39 0.79 16 45 H 0.38 4.91 9.12 45.56 0.42 5.32 16 46 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.08 0.95 7.07 -51.93 -0.37 0.58 16 LS Contribution 394.62 15.07 5.95 5.95 Total: -1.00 -33.72 394.62 -9.06 -42.78 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -6.88 Total: 7.08 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -2.33 Total: 3.62 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: -0.39 Total: -56.95 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.38 Total: -19.16 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.72 -9.06 -42.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958271344.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.747 kcal (2) G-P(sol) polarization free energy of solvation -33.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds