Wall clock time and date at job start Tue Mar 31 2020 17:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38350 * 119.46326 * 2 1 4 4 C 1.38357 * 119.30391 * 179.76783 * 3 2 1 5 5 C 1.50699 * 120.85659 * 180.25400 * 4 3 2 6 6 C 1.40028 * 118.28525 * 0.45663 * 4 3 2 7 7 C 1.47840 * 120.55565 * 179.79873 * 6 4 3 8 8 O 1.21553 * 120.00152 * 269.71916 * 7 6 4 9 9 N 1.34777 * 119.99500 * 89.99472 * 7 6 4 10 10 C 1.46505 * 119.99724 * 179.72331 * 9 7 6 11 11 C 1.52999 * 109.47192 * 180.02562 * 10 9 7 12 12 H 1.09007 * 110.88064 * 305.69776 * 11 10 9 13 13 C 1.54906 * 111.00770 * 69.57914 * 11 10 9 14 14 N 1.47425 * 104.83337 * 155.08820 * 13 11 10 15 15 C 1.36932 * 125.65063 * 155.90638 * 14 13 11 16 16 H 1.07998 * 119.99881 * 0.02562 * 15 14 13 17 17 C 1.38814 * 120.00242 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99511 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00208 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47203 * 90.00174 * 19 17 15 21 21 H 1.48497 * 109.47297 * 210.00406 * 19 17 15 22 22 H 1.48503 * 109.47306 * 330.00301 * 19 17 15 23 23 C 1.47018 * 108.70057 * 335.86970 * 14 13 11 24 24 C 1.54375 * 107.29245 * 1.09620 * 23 14 13 25 25 H 1.09003 * 110.70228 * 263.79440 * 24 23 14 26 26 O 1.42891 * 110.76028 * 140.50439 * 24 23 14 27 27 C 1.39519 * 118.88272 * 359.52875 * 6 4 3 28 28 C 1.50693 * 119.71575 * 180.23172 * 27 6 4 29 29 N 1.31695 * 120.56491 * 0.25082 * 27 6 4 30 30 H 1.09004 * 109.46748 * 270.02055 * 1 2 3 31 31 H 1.09001 * 109.47079 * 30.01613 * 1 2 3 32 32 H 1.08997 * 109.47713 * 150.01571 * 1 2 3 33 33 H 1.07998 * 120.34559 * 0.02708 * 3 2 1 34 34 H 1.08996 * 109.47138 * 270.20678 * 5 4 3 35 35 H 1.08998 * 109.46972 * 30.20384 * 5 4 3 36 36 H 1.08996 * 109.46921 * 150.20471 * 5 4 3 37 37 H 0.97000 * 120.00483 * 359.72763 * 9 7 6 38 38 H 1.09003 * 109.46699 * 299.99993 * 10 9 7 39 39 H 1.08993 * 109.47199 * 60.00006 * 10 9 7 40 40 H 1.09004 * 110.36362 * 273.92447 * 13 11 10 41 41 H 1.08998 * 110.36882 * 36.24777 * 13 11 10 42 42 H 0.97008 * 119.99508 * 180.02562 * 18 17 15 43 43 H 1.09006 * 109.88132 * 120.48044 * 23 14 13 44 44 H 1.08998 * 109.88765 * 241.48791 * 23 14 13 45 45 H 0.96704 * 114.00311 * 66.47923 * 26 24 23 46 46 H 1.08999 * 109.47407 * 89.99599 * 28 27 6 47 47 H 1.08997 * 109.47429 * 209.99580 * 28 27 6 48 48 H 1.08997 * 109.47487 * 329.99899 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2007 0.0049 5 6 4.3475 2.4923 0.0108 6 6 4.2312 -0.0342 -0.0001 7 6 5.7083 -0.0968 0.0002 8 8 6.3158 -0.1232 -1.0523 9 7 6.3809 -0.1303 1.1677 10 6 7.8444 -0.1985 1.1681 11 6 8.3533 -0.2255 2.6107 12 1 7.9612 0.6195 3.1769 13 6 7.9996 -1.5673 3.2993 14 7 9.0074 -1.7222 4.3641 15 6 8.8572 -2.4677 5.5028 16 1 7.9377 -3.0063 5.6783 17 6 9.8872 -2.5321 6.4313 18 7 11.0079 -1.8760 6.2172 19 14 9.6820 -3.5484 7.9850 20 1 10.1537 -4.9343 7.7358 21 1 10.4802 -2.9435 9.0813 22 1 8.2488 -3.5756 8.3731 23 6 10.2008 -0.9444 4.0004 24 6 9.9040 -0.2517 2.6531 25 1 10.3026 -0.8358 1.8235 26 8 10.4327 1.0757 2.6387 27 6 3.4715 -1.2044 0.0002 28 6 4.1625 -2.5436 0.0001 29 7 2.1557 -1.1487 0.0002 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3634 -0.8901 -0.5136 33 1 1.6444 2.1381 0.0004 34 1 4.5352 2.8080 -1.0154 35 1 3.7718 3.2600 0.5276 36 1 5.2972 2.3428 0.5244 37 1 5.8961 -0.1093 2.0076 38 1 8.1660 -1.1036 0.6527 39 1 8.2489 0.6745 0.6561 40 1 6.9986 -1.5212 3.7283 41 1 8.0707 -2.3894 2.5872 42 1 11.7279 -1.9213 6.8658 43 1 10.4020 -0.1945 4.7656 44 1 11.0591 -1.6084 3.8977 45 1 11.3987 1.1147 2.6639 46 1 4.3296 -2.8664 1.0278 47 1 3.5381 -3.2747 -0.5133 48 1 5.1199 -2.4585 -0.5140 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958271344.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:17 Heat of formation + Delta-G solvation = -63.028863 kcal Electronic energy + Delta-G solvation = -28835.136998 eV Core-core repulsion = 24889.094701 eV Total energy + Delta-G solvation = -3946.042298 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.94855 -40.46999 -39.64144 -36.65303 -36.12018 -35.29348 -34.79782 -33.96808 -31.50921 -30.14020 -29.43461 -28.85094 -28.29275 -27.11893 -25.22021 -23.44953 -22.36769 -22.11351 -21.63477 -21.17398 -19.11658 -18.65053 -18.21592 -18.09863 -17.29166 -16.91804 -16.25952 -16.04834 -15.80113 -15.76830 -15.64285 -15.24519 -14.64029 -14.46974 -14.40365 -14.30249 -14.14220 -14.00486 -13.93216 -13.75099 -13.61819 -13.22102 -13.18639 -13.11336 -13.00712 -12.73254 -12.71252 -12.64950 -12.45902 -12.30782 -11.93120 -11.80135 -11.58340 -11.27771 -10.83856 -10.74005 -10.54046 -10.48889 -10.20346 -9.82635 -8.94360 -7.87343 -5.23643 -0.17547 0.14583 1.39048 1.46188 1.47502 1.56083 2.01845 2.47288 2.56190 3.14181 3.22570 3.33393 3.47005 3.55916 3.58513 3.61337 3.76912 3.87964 4.05124 4.13929 4.31166 4.33641 4.39722 4.44606 4.48546 4.54011 4.58622 4.60185 4.62284 4.68790 4.73220 4.81750 4.85958 4.93681 4.94610 5.06851 5.13101 5.16347 5.20963 5.21839 5.33549 5.41498 5.48172 5.65387 5.70774 6.15766 6.35876 6.88318 6.89792 7.03250 7.06491 7.73219 8.36332 9.22728 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013947 B = 0.002798 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.153270 B =10003.019189 C =11161.317637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.138 3.862 3 C -0.178 4.178 4 C -0.006 4.006 5 C -0.122 4.122 6 C -0.209 4.209 7 C 0.581 3.419 8 O -0.570 6.570 9 N -0.706 5.706 10 C 0.146 3.854 11 C -0.089 4.089 12 H 0.086 0.914 13 C 0.140 3.860 14 N -0.625 5.625 15 C -0.242 4.242 16 H 0.086 0.914 17 C -0.066 4.066 18 N -0.951 5.951 19 Si 0.978 3.022 20 H -0.286 1.286 21 H -0.296 1.296 22 H -0.267 1.267 23 C 0.161 3.839 24 C 0.097 3.903 25 H 0.076 0.924 26 O -0.569 6.569 27 C 0.162 3.838 28 C -0.110 4.110 29 N -0.510 5.510 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.175 0.825 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.060 0.940 37 H 0.411 0.589 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.054 0.946 41 H 0.032 0.968 42 H 0.247 0.753 43 H 0.019 0.981 44 H 0.013 0.987 45 H 0.393 0.607 46 H 0.093 0.907 47 H 0.090 0.910 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.035 8.167 -13.380 23.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.001 3.999 3 C -0.197 4.197 4 C -0.014 4.014 5 C -0.178 4.178 6 C -0.214 4.214 7 C 0.366 3.634 8 O -0.449 6.449 9 N -0.356 5.356 10 C 0.022 3.978 11 C -0.108 4.108 12 H 0.105 0.895 13 C 0.015 3.985 14 N -0.352 5.352 15 C -0.371 4.371 16 H 0.104 0.896 17 C -0.259 4.259 18 N -0.600 5.600 19 Si 0.807 3.193 20 H -0.213 1.213 21 H -0.222 1.222 22 H -0.192 1.192 23 C 0.035 3.965 24 C 0.037 3.963 25 H 0.094 0.906 26 O -0.376 6.376 27 C 0.024 3.976 28 C -0.168 4.168 29 N -0.222 5.222 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.093 0.907 33 H 0.192 0.808 34 H 0.104 0.896 35 H 0.124 0.876 36 H 0.079 0.921 37 H 0.247 0.753 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.050 0.950 42 H 0.056 0.944 43 H 0.037 0.963 44 H 0.031 0.969 45 H 0.243 0.757 46 H 0.111 0.889 47 H 0.108 0.892 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.575 7.484 -13.956 24.409 hybrid contribution 1.536 -0.149 1.467 2.129 sum -17.039 7.334 -12.489 22.363 Atomic orbital electron populations 1.20863 0.86046 1.04720 1.04350 1.22086 0.98838 0.87886 0.91113 1.22106 0.93024 1.00670 1.03923 1.20632 0.94782 0.94324 0.91695 1.20967 0.99710 0.93258 1.03892 1.20622 0.93421 0.95765 1.11636 1.18113 0.86804 0.74928 0.83517 1.90783 1.70240 1.51402 1.32508 1.45985 1.07531 1.73482 1.08609 1.21191 0.78982 1.02480 0.95129 1.22398 0.94323 0.98895 0.95214 0.89548 1.21780 0.93056 0.93925 0.89785 1.44601 1.13928 1.56236 1.20419 1.19475 1.00358 1.21574 0.95670 0.89594 1.25657 0.96213 1.01914 1.02146 1.70161 1.05955 1.47041 1.36874 0.85080 0.77714 0.77791 0.78763 1.21329 1.22232 1.19208 1.21607 0.89115 0.93171 0.92622 1.22880 0.93416 0.83501 0.96501 0.90589 1.86384 1.27535 1.26557 1.97119 1.21449 0.89316 0.94929 0.91941 1.20823 0.99598 0.92147 1.04183 1.67431 1.08620 1.30499 1.15610 0.88928 0.87980 0.90679 0.80810 0.89617 0.87615 0.92054 0.75276 0.91192 0.90817 0.92805 0.95039 0.94392 0.96287 0.96864 0.75718 0.88878 0.89154 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 10.16 71.24 0.72 -0.34 16 2 C 0.14 2.48 6.78 42.57 0.29 2.77 16 3 C -0.18 -2.77 9.43 22.32 0.21 -2.56 16 4 C -0.01 -0.12 5.95 -19.40 -0.12 -0.24 16 5 C -0.12 -1.92 9.69 71.24 0.69 -1.23 16 6 C -0.21 -5.12 5.65 -19.99 -0.11 -5.23 16 7 C 0.58 15.90 4.35 86.78 0.38 16.28 16 8 O -0.57 -19.64 17.10 -3.88 -0.07 -19.70 16 9 N -0.71 -17.45 5.45 -465.97 -2.54 -19.99 16 10 C 0.15 3.99 5.12 86.38 0.44 4.44 16 11 C -0.09 -2.85 2.79 -9.40 -0.03 -2.87 16 12 H 0.09 2.87 8.14 -2.38 -0.02 2.85 16 13 C 0.14 5.25 6.56 86.85 0.57 5.82 16 14 N -0.62 -31.00 3.39 -691.90 -2.35 -33.35 16 15 C -0.24 -13.22 10.28 84.03 0.86 -12.36 16 16 H 0.09 4.45 7.83 -2.91 -0.02 4.43 16 17 C -0.07 -3.72 5.49 84.86 0.47 -3.25 16 18 N -0.95 -56.38 10.31 21.65 0.22 -56.16 16 19 Si 0.98 45.08 29.55 68.60 2.03 47.11 16 20 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 21 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 23 C 0.16 7.68 5.15 86.75 0.45 8.13 16 24 C 0.10 3.46 3.80 31.80 0.12 3.58 16 25 H 0.08 2.45 8.04 -2.39 -0.02 2.43 16 26 O -0.57 -18.55 13.39 -148.98 -1.99 -20.54 16 27 C 0.16 3.98 6.82 42.89 0.29 4.27 16 28 C -0.11 -2.46 9.79 71.23 0.70 -1.76 16 29 N -0.51 -11.99 10.17 -171.07 -1.74 -13.73 16 30 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.10 0.53 8.07 -2.39 -0.02 0.51 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.11 1.06 8.10 -2.39 -0.02 1.04 16 36 H 0.06 1.13 7.19 -2.39 -0.02 1.12 16 37 H 0.41 9.03 8.42 -92.71 -0.78 8.25 16 38 H 0.07 1.97 8.03 -2.39 -0.02 1.96 16 39 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 41 H 0.03 1.17 7.96 -2.39 -0.02 1.15 16 42 H 0.25 14.27 8.31 -92.70 -0.77 13.50 16 43 H 0.02 1.04 7.30 -2.38 -0.02 1.02 16 44 H 0.01 0.70 7.50 -2.39 -0.02 0.69 16 45 H 0.39 9.88 9.12 -74.05 -0.68 9.21 16 46 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.09 1.82 8.14 -2.39 -0.02 1.81 16 48 H 0.07 1.63 7.07 -2.39 -0.02 1.61 16 Total: -1.00 -74.56 394.62 -0.97 -75.53 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: -0.47 Total: 25.38 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: 5.94 Total: 15.46 kcal Atomic # 7 Polarization: -116.83 SS G_CDS: -6.40 Total: -123.23 kcal Atomic # 8 Polarization: -38.19 SS G_CDS: -2.06 Total: -40.25 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -74.56 -0.97 -75.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958271344.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.504 kcal (2) G-P(sol) polarization free energy of solvation -74.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds