Wall clock time and date at job start Tue Mar 31 2020 17:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38349 * 119.46004 * 2 1 4 4 C 1.38355 * 119.30633 * 179.76621 * 3 2 1 5 5 C 1.50696 * 120.86136 * 180.25386 * 4 3 2 6 6 C 1.40030 * 118.28510 * 0.52799 * 4 3 2 7 7 C 1.47836 * 120.56031 * 179.73481 * 6 4 3 8 8 O 1.21555 * 119.99907 * 269.71945 * 7 6 4 9 9 N 1.34778 * 120.00270 * 89.71837 * 7 6 4 10 10 C 1.46497 * 120.00205 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47210 * 179.97438 * 10 9 7 12 12 H 1.08997 * 110.91968 * 51.09975 * 11 10 9 13 13 C 1.54910 * 111.00601 * 287.19410 * 11 10 9 14 14 N 1.47425 * 104.83206 * 204.91882 * 13 11 10 15 15 C 1.36938 * 125.64396 * 204.16566 * 14 13 11 16 16 H 1.07994 * 120.00714 * 354.83108 * 15 14 13 17 17 C 1.38817 * 119.99760 * 174.83686 * 15 14 13 18 18 N 1.31621 * 120.00093 * 7.06129 * 17 15 14 19 19 Si 1.86802 * 120.00053 * 187.05912 * 17 15 14 20 20 H 1.48501 * 109.46907 * 94.98523 * 19 17 15 21 21 H 1.48496 * 109.47377 * 214.98668 * 19 17 15 22 22 H 1.48501 * 109.47212 * 334.98993 * 19 17 15 23 23 C 1.47022 * 108.70707 * 24.12841 * 14 13 11 24 24 C 1.54328 * 107.26739 * 358.93998 * 23 14 13 25 25 H 1.08993 * 110.71845 * 96.17536 * 24 23 14 26 26 O 1.42899 * 110.71923 * 219.26802 * 24 23 14 27 27 C 1.39516 * 118.87889 * 359.45228 * 6 4 3 28 28 C 1.50699 * 119.71733 * 180.27949 * 27 6 4 29 29 N 1.31693 * 120.57068 * 0.30450 * 27 6 4 30 30 H 1.09002 * 109.46889 * 269.97273 * 1 2 3 31 31 H 1.08997 * 109.47550 * 29.97435 * 1 2 3 32 32 H 1.09007 * 109.47543 * 149.97603 * 1 2 3 33 33 H 1.08002 * 120.34722 * 0.02798 * 3 2 1 34 34 H 1.09003 * 109.47604 * 270.27717 * 5 4 3 35 35 H 1.09003 * 109.46863 * 30.27626 * 5 4 3 36 36 H 1.08998 * 109.47597 * 150.27396 * 5 4 3 37 37 H 0.97003 * 119.99522 * 359.97438 * 9 7 6 38 38 H 1.08998 * 109.47476 * 59.99510 * 10 9 7 39 39 H 1.09005 * 109.47043 * 299.99886 * 10 9 7 40 40 H 1.08996 * 110.36484 * 86.07950 * 13 11 10 41 41 H 1.09001 * 110.36789 * 323.75471 * 13 11 10 42 42 H 0.96998 * 120.00290 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.88197 * 239.52607 * 23 14 13 44 44 H 1.08994 * 109.88309 * 118.35647 * 23 14 13 45 45 H 0.96707 * 114.00016 * 296.15891 * 26 24 23 46 46 H 1.09001 * 109.47332 * 89.99881 * 28 27 6 47 47 H 1.09003 * 109.47667 * 210.00523 * 28 27 6 48 48 H 1.09007 * 109.46810 * 330.00384 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5709 1.2009 0.0049 5 6 4.3474 2.4924 0.0108 6 6 4.2312 -0.0339 -0.0016 7 6 5.7082 -0.0966 -0.0027 8 8 6.3147 -0.1222 -1.0558 9 7 6.3824 -0.1252 1.1640 10 6 7.8461 -0.1867 1.1630 11 6 8.3567 -0.2080 2.6050 12 1 7.8512 -0.9797 3.1855 13 6 8.1974 1.1816 3.2710 14 7 9.2193 1.2103 4.3332 15 6 9.1775 1.9874 5.4600 16 1 8.3869 2.7119 5.5874 17 6 10.1516 1.8439 6.4386 18 7 11.1900 1.0640 6.2242 19 14 9.9886 2.7576 8.0597 20 1 9.3503 1.8710 9.0656 21 1 11.3354 3.1603 8.5385 22 1 9.1506 3.9678 7.8638 23 6 10.2903 0.2659 3.9829 24 6 9.8959 -0.3990 2.6472 25 1 10.3708 0.1095 1.8083 26 8 10.2367 -1.7868 2.6533 27 6 3.4716 -1.2042 -0.0011 28 6 4.1627 -2.5434 -0.0017 29 7 2.1558 -1.1487 -0.0006 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3634 -0.8898 -0.5142 33 1 1.6443 2.1381 0.0005 34 1 4.5341 2.8089 -1.0154 35 1 3.7721 3.2598 0.5288 36 1 5.2976 2.3428 0.5234 37 1 5.8984 -0.1044 2.0044 38 1 8.2461 0.6873 0.6491 39 1 8.1714 -1.0910 0.6486 40 1 7.2009 1.2844 3.7005 41 1 8.3823 1.9736 2.5453 42 1 11.8704 0.9634 6.9081 43 1 10.3852 -0.4920 4.7605 44 1 11.2328 0.8008 3.8666 45 1 11.1862 -1.9583 2.7185 46 1 4.3301 -2.8663 1.0258 47 1 3.5381 -3.2744 -0.5151 48 1 5.1199 -2.4580 -0.5162 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958271347.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:26 Heat of formation + Delta-G solvation = -63.070426 kcal Electronic energy + Delta-G solvation = -28821.252529 eV Core-core repulsion = 24875.208429 eV Total energy + Delta-G solvation = -3946.044100 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.94848 -40.46852 -39.64593 -36.64862 -36.11984 -35.29216 -34.80000 -33.97629 -31.51511 -30.14017 -29.43391 -28.84861 -28.30624 -27.10665 -25.21877 -23.44317 -22.36870 -22.11639 -21.67191 -21.16257 -19.11834 -18.64730 -18.15703 -18.12814 -17.30320 -16.89667 -16.19851 -16.11732 -15.83859 -15.77329 -15.63390 -15.21860 -14.64849 -14.47909 -14.41449 -14.30600 -14.12242 -14.02897 -13.93071 -13.76381 -13.62511 -13.21035 -13.18552 -13.12657 -13.00762 -12.74792 -12.71659 -12.64700 -12.42826 -12.29112 -11.94215 -11.80926 -11.59222 -11.26370 -10.84673 -10.72648 -10.54125 -10.49240 -10.20205 -9.82781 -8.94199 -7.88810 -5.23804 -0.17710 0.14356 1.39143 1.46087 1.47686 1.56312 2.01859 2.47140 2.56001 3.14053 3.22818 3.30911 3.46908 3.56705 3.58820 3.61212 3.76664 3.87976 4.05004 4.14016 4.30958 4.33552 4.39627 4.44700 4.48510 4.54007 4.58275 4.60354 4.62198 4.68833 4.73436 4.81718 4.86467 4.92969 4.94729 5.06627 5.13251 5.16264 5.20649 5.21741 5.34238 5.39688 5.50054 5.65125 5.69899 6.15390 6.35971 6.87627 6.89153 7.03321 7.05929 7.72904 8.36534 9.21921 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014117 B = 0.002772 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.931414 B =10098.865762 C =11178.226871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.139 3.861 3 C -0.179 4.179 4 C -0.006 4.006 5 C -0.123 4.123 6 C -0.209 4.209 7 C 0.580 3.420 8 O -0.570 6.570 9 N -0.705 5.705 10 C 0.146 3.854 11 C -0.089 4.089 12 H 0.086 0.914 13 C 0.140 3.860 14 N -0.625 5.625 15 C -0.243 4.243 16 H 0.087 0.913 17 C -0.065 4.065 18 N -0.950 5.950 19 Si 0.977 3.023 20 H -0.288 1.288 21 H -0.296 1.296 22 H -0.265 1.265 23 C 0.159 3.841 24 C 0.097 3.903 25 H 0.076 0.924 26 O -0.569 6.569 27 C 0.161 3.839 28 C -0.109 4.109 29 N -0.509 5.509 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.173 0.827 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.411 0.589 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.055 0.945 41 H 0.032 0.968 42 H 0.247 0.753 43 H 0.021 0.979 44 H 0.011 0.989 45 H 0.393 0.607 46 H 0.094 0.906 47 H 0.090 0.910 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.690 -1.359 -13.274 22.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.001 3.999 3 C -0.198 4.198 4 C -0.014 4.014 5 C -0.180 4.180 6 C -0.214 4.214 7 C 0.366 3.634 8 O -0.449 6.449 9 N -0.356 5.356 10 C 0.022 3.978 11 C -0.108 4.108 12 H 0.104 0.896 13 C 0.015 3.985 14 N -0.352 5.352 15 C -0.372 4.372 16 H 0.105 0.895 17 C -0.258 4.258 18 N -0.598 5.598 19 Si 0.805 3.195 20 H -0.215 1.215 21 H -0.223 1.223 22 H -0.190 1.190 23 C 0.034 3.966 24 C 0.037 3.963 25 H 0.094 0.906 26 O -0.377 6.377 27 C 0.023 3.977 28 C -0.166 4.166 29 N -0.221 5.221 30 H 0.111 0.889 31 H 0.119 0.881 32 H 0.094 0.906 33 H 0.190 0.810 34 H 0.104 0.896 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.247 0.753 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.050 0.950 42 H 0.056 0.944 43 H 0.039 0.961 44 H 0.030 0.970 45 H 0.243 0.757 46 H 0.113 0.887 47 H 0.109 0.891 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.234 -2.169 -13.883 23.820 hybrid contribution 1.589 1.124 1.525 2.473 sum -17.644 -1.045 -12.358 21.567 Atomic orbital electron populations 1.20862 0.86026 1.04724 1.04360 1.22074 0.98832 0.87855 0.91098 1.22104 0.93032 1.00708 1.03962 1.20616 0.94775 0.94315 0.91657 1.20972 0.99772 0.93360 1.03856 1.20619 0.93422 0.95750 1.11635 1.18114 0.86803 0.74926 0.83526 1.90784 1.70313 1.51397 1.32455 1.45985 1.07474 1.73513 1.08618 1.21190 0.78984 1.02472 0.95148 1.22402 0.94800 0.98350 0.95296 0.89564 1.21788 0.92897 0.93895 0.89893 1.44609 1.21465 1.47370 1.21748 1.19471 1.09310 1.13884 0.94492 0.89541 1.25671 0.96964 1.01267 1.01901 1.70162 1.11811 1.43645 1.34229 0.85083 0.76597 0.78163 0.79654 1.21536 1.22305 1.18977 1.21618 0.90554 0.91669 0.92785 1.22878 0.94815 0.82075 0.96556 0.90644 1.86383 1.30962 1.23448 1.96867 1.21477 0.89315 0.94965 0.91949 1.20825 0.99569 0.92019 1.04226 1.67436 1.08597 1.30398 1.15620 0.88912 0.88075 0.90580 0.80953 0.89625 0.87772 0.92035 0.75261 0.91119 0.90912 0.92711 0.95041 0.94360 0.96072 0.97032 0.75728 0.88737 0.89071 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 10.16 71.24 0.72 -0.33 16 2 C 0.14 2.48 6.78 42.57 0.29 2.77 16 3 C -0.18 -2.86 9.43 22.32 0.21 -2.65 16 4 C -0.01 -0.11 5.95 -19.40 -0.12 -0.23 16 5 C -0.12 -2.09 9.69 71.23 0.69 -1.40 16 6 C -0.21 -5.10 5.65 -19.99 -0.11 -5.22 16 7 C 0.58 15.89 4.35 86.78 0.38 16.27 16 8 O -0.57 -19.65 17.10 -3.89 -0.07 -19.72 16 9 N -0.71 -17.42 5.50 -465.99 -2.56 -19.98 16 10 C 0.15 4.00 5.13 86.38 0.44 4.44 16 11 C -0.09 -2.85 2.78 -9.40 -0.03 -2.88 16 12 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 13 C 0.14 5.23 6.65 86.86 0.58 5.80 16 14 N -0.62 -30.80 3.39 -691.99 -2.35 -33.14 16 15 C -0.24 -13.17 10.27 84.03 0.86 -12.31 16 16 H 0.09 4.44 7.84 -2.91 -0.02 4.41 16 17 C -0.06 -3.61 5.48 84.86 0.46 -3.15 16 18 N -0.95 -56.07 10.36 21.65 0.22 -55.84 16 19 Si 0.98 44.74 29.56 68.60 2.03 46.77 16 20 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 21 H -0.30 -13.72 7.11 99.48 0.71 -13.02 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 23 C 0.16 7.59 5.16 86.73 0.45 8.04 16 24 C 0.10 3.45 3.79 31.79 0.12 3.57 16 25 H 0.08 2.44 8.04 -2.39 -0.02 2.42 16 26 O -0.57 -18.72 13.39 -148.98 -2.00 -20.71 16 27 C 0.16 3.87 6.82 42.89 0.29 4.16 16 28 C -0.11 -2.29 9.79 71.24 0.70 -1.59 16 29 N -0.51 -11.71 10.17 -171.07 -1.74 -13.45 16 30 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.10 0.55 8.07 -2.39 -0.02 0.53 16 32 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16 34 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.10 1.21 8.10 -2.39 -0.02 1.19 16 36 H 0.06 1.23 7.19 -2.39 -0.02 1.21 16 37 H 0.41 8.98 8.46 -92.71 -0.78 8.20 16 38 H 0.07 1.98 7.96 -2.39 -0.02 1.96 16 39 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 40 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.03 1.15 7.91 -2.39 -0.02 1.13 16 42 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 43 H 0.02 1.15 7.21 -2.39 -0.02 1.14 16 44 H 0.01 0.61 7.61 -2.39 -0.02 0.59 16 45 H 0.39 10.05 9.12 -74.05 -0.68 9.38 16 46 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.07 1.54 7.07 -2.38 -0.02 1.53 16 Total: -1.00 -74.01 394.76 -1.00 -75.01 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: -0.48 Total: 25.76 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: 5.94 Total: 15.31 kcal Atomic # 7 Polarization: -115.99 SS G_CDS: -6.43 Total: -122.42 kcal Atomic # 8 Polarization: -38.37 SS G_CDS: -2.06 Total: -40.43 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -74.01 -1.00 -75.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958271347.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.939 kcal (2) G-P(sol) polarization free energy of solvation -74.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds