Wall clock time and date at job start Tue Mar 31 2020 17:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38000 * 120.82146 * 2 1 4 4 C 1.39128 * 119.26612 * 180.28483 * 3 2 1 5 5 O 1.35498 * 119.52689 * 179.70352 * 4 3 2 6 6 N 1.32435 * 120.94837 * 359.43570 * 4 3 2 7 7 C 1.31637 * 121.79896 * 0.27442 * 6 4 3 8 8 C 1.39564 * 120.63023 * 0.02562 * 7 6 4 9 9 C 1.47608 * 120.50576 * 180.02562 * 8 7 6 10 10 O 1.21577 * 120.00457 * 130.30165 * 9 8 7 11 11 N 1.34779 * 119.99747 * 310.30831 * 9 8 7 12 12 C 1.46494 * 120.00135 * 4.47622 * 11 9 8 13 13 C 1.46497 * 120.00003 * 184.48371 * 11 9 8 14 14 C 1.53003 * 109.47235 * 239.99367 * 13 11 9 15 15 C 1.52996 * 109.47438 * 179.97438 * 14 13 11 16 16 C 1.53005 * 109.46723 * 60.00033 * 15 14 13 17 17 N 1.46500 * 109.46759 * 179.97438 * 16 15 14 18 18 C 1.36944 * 120.00303 * 274.99970 * 17 16 15 19 19 H 1.07997 * 119.99476 * 0.02562 * 18 17 16 20 20 C 1.38813 * 120.00081 * 180.02562 * 18 17 16 21 21 N 1.31613 * 119.99782 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99773 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47386 * 60.00229 * 22 20 18 24 24 H 1.48497 * 109.47221 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47209 * 300.00100 * 22 20 18 26 26 C 1.52989 * 109.47455 * 299.99933 * 16 15 14 27 27 C 1.52998 * 109.47313 * 119.99465 * 13 11 9 28 28 H 1.09001 * 109.46224 * 264.88920 * 1 2 3 29 29 H 1.08996 * 109.47206 * 24.88437 * 1 2 3 30 30 H 1.08999 * 109.47242 * 144.89186 * 1 2 3 31 31 H 1.08001 * 120.36971 * 359.97438 * 3 2 1 32 32 H 0.96694 * 114.00523 * 269.73645 * 5 4 3 33 33 H 1.08005 * 119.68994 * 179.97438 * 7 6 4 34 34 H 1.09006 * 109.47192 * 93.18864 * 12 11 9 35 35 H 1.09001 * 109.47609 * 213.19500 * 12 11 9 36 36 H 1.09001 * 109.47440 * 333.19032 * 12 11 9 37 37 H 1.08999 * 109.47328 * 359.97438 * 13 11 9 38 38 H 1.08997 * 109.47362 * 300.00279 * 14 13 11 39 39 H 1.09003 * 109.46564 * 59.99600 * 14 13 11 40 40 H 1.08997 * 109.47338 * 300.00619 * 15 14 13 41 41 H 1.09001 * 109.47497 * 179.97438 * 15 14 13 42 42 H 1.09007 * 109.46810 * 60.00411 * 16 15 14 43 43 H 0.96997 * 120.00263 * 95.00477 * 17 16 15 44 44 H 0.97000 * 119.99596 * 179.97438 * 21 20 18 45 45 H 1.09007 * 109.47502 * 300.00055 * 26 16 15 46 46 H 1.08999 * 109.47727 * 180.02562 * 26 16 15 47 47 H 1.08996 * 109.47484 * 300.00003 * 27 13 11 48 48 H 1.09005 * 109.47569 * 60.00164 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6048 1.1473 -0.0060 5 8 4.3043 2.3078 -0.0122 6 7 4.2548 -0.0065 -0.0006 7 6 3.6205 -1.1599 0.0054 8 6 2.2256 -1.2044 0.0056 9 6 1.5172 -2.4993 0.0128 10 8 0.6279 -2.7013 0.8169 11 7 1.8562 -3.4579 -0.8719 12 6 2.9914 -3.2528 -1.7750 13 6 1.0895 -4.7048 -0.9307 14 6 2.0150 -5.8869 -0.6355 15 6 1.2142 -7.1892 -0.6962 16 6 0.6093 -7.3512 -2.0922 17 7 -0.1570 -8.5985 -2.1505 18 6 0.4771 -9.7793 -2.4315 19 1 1.5422 -9.7910 -2.6098 20 6 -0.2491 -10.9610 -2.4873 21 7 -1.5472 -10.9464 -2.2706 22 14 0.6160 -12.5716 -2.8699 23 1 1.6509 -12.8350 -1.8381 24 1 -0.3749 -13.6776 -2.8713 25 1 1.2597 -12.4828 -4.2052 26 6 -0.3161 -6.1692 -2.3874 27 6 0.4851 -4.8666 -2.3268 28 1 -0.3632 -0.0916 1.0236 29 1 -0.3633 0.9322 -0.4324 30 1 -0.3634 -0.8407 -0.5910 31 1 1.6936 2.1314 -0.0004 32 1 4.5070 2.6403 -0.8972 33 1 4.1849 -2.0808 0.0093 34 1 3.8923 -3.6724 -1.3273 35 1 2.7935 -3.7479 -2.7257 36 1 3.1330 -2.1853 -1.9440 37 1 0.2906 -4.6754 -0.1898 38 1 2.8141 -5.9166 -1.3761 39 1 2.4456 -5.7716 0.3592 40 1 0.4152 -7.1593 0.0447 41 1 1.8735 -8.0314 -0.4863 42 1 1.4083 -7.3811 -2.8331 43 1 -1.1136 -8.5880 -1.9901 44 1 -2.0547 -11.7721 -2.3099 45 1 -1.1151 -6.1393 -1.6465 46 1 -0.7474 -6.2849 -3.3817 47 1 -0.1742 -4.0246 -2.5372 48 1 1.2842 -4.8963 -3.0676 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963902576.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:58 Heat of formation + Delta-G solvation = -33.485160 kcal Electronic energy + Delta-G solvation = -28780.165263 eV Core-core repulsion = 24835.404077 eV Total energy + Delta-G solvation = -3944.761187 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.38811 -39.96800 -38.20393 -37.34959 -35.64044 -34.27264 -33.52145 -31.44678 -30.44578 -30.39542 -28.48212 -27.74901 -26.95688 -24.67149 -23.60347 -22.79668 -22.28758 -21.35398 -19.78051 -19.32241 -18.85786 -17.88653 -17.35497 -16.97902 -16.62127 -16.29785 -15.47462 -15.18853 -14.89420 -14.56650 -14.13161 -13.96902 -13.88036 -13.60870 -13.58116 -13.40307 -13.11277 -12.96864 -12.88299 -12.61080 -12.55375 -12.35097 -12.17611 -12.06631 -11.82672 -11.45257 -10.89479 -10.78009 -10.74902 -10.70524 -10.34395 -10.22215 -10.16475 -10.02819 -9.76611 -9.73717 -9.57582 -9.37162 -8.87929 -8.72802 -6.94817 -5.75689 -3.04343 0.22225 0.68160 2.36258 2.68877 3.05000 3.24442 3.43822 3.48350 3.49363 4.04307 4.11631 4.21699 4.52746 4.59005 4.72820 4.82111 4.87656 4.95391 4.97529 5.14046 5.23610 5.25331 5.25955 5.30456 5.39920 5.49252 5.52910 5.59843 5.63009 5.74096 5.78023 5.81618 5.85985 5.94188 6.02039 6.21767 6.24215 6.26334 6.40722 6.54421 6.60870 6.68675 6.94890 6.96919 7.11445 7.16503 7.35781 7.69843 7.90496 8.43158 9.53953 10.12659 10.47022 11.46960 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.031220 B = 0.002168 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.632180 B =12914.038988 C =13369.941732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.023 3.977 3 C -0.193 4.193 4 C 0.329 3.671 5 O -0.481 6.481 6 N -0.508 5.508 7 C 0.162 3.838 8 C -0.192 4.192 9 C 0.565 3.435 10 O -0.526 6.526 11 N -0.601 5.601 12 C 0.067 3.933 13 C 0.140 3.860 14 C -0.121 4.121 15 C -0.132 4.132 16 C 0.178 3.822 17 N -0.725 5.725 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.015 4.015 21 N -0.933 5.933 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.121 4.121 27 C -0.119 4.119 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.147 0.853 32 H 0.404 0.596 33 H 0.168 0.832 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.046 0.954 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.061 0.939 46 H 0.067 0.933 47 H 0.059 0.941 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.955 27.088 0.691 28.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.015 3.985 3 C -0.214 4.214 4 C 0.151 3.849 5 O -0.288 6.288 6 N -0.227 5.227 7 C 0.003 3.997 8 C -0.198 4.198 9 C 0.351 3.649 10 O -0.402 6.402 11 N -0.333 5.333 12 C -0.076 4.076 13 C 0.038 3.962 14 C -0.160 4.160 15 C -0.174 4.174 16 C 0.068 3.932 17 N -0.366 5.366 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.211 4.211 21 N -0.581 5.581 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.160 4.160 27 C -0.158 4.158 28 H 0.109 0.891 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.165 0.835 32 H 0.262 0.738 33 H 0.185 0.815 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.121 0.879 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.064 0.936 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.078 0.922 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.450 26.853 1.651 28.515 hybrid contribution -0.418 -0.827 -0.599 1.104 sum 9.031 26.026 1.052 27.568 Atomic orbital electron populations 1.20913 0.88923 1.03372 1.04329 1.20261 0.97354 0.90680 0.90189 1.21950 0.93741 0.99465 1.06241 1.19343 0.87077 0.85232 0.93228 1.84733 1.75933 1.34111 1.34065 1.67203 1.41882 0.98199 1.15448 1.22842 0.90077 0.95377 0.91372 1.20911 0.95440 0.94544 1.08857 1.17966 0.82862 0.83054 0.80986 1.90818 1.31258 1.80383 1.37775 1.47934 1.31891 1.17359 1.36089 1.22008 0.88703 1.02096 0.94776 1.21320 0.94444 0.81520 0.98921 1.21862 0.98265 0.94795 1.01118 1.22241 0.99414 0.94755 1.00945 1.20222 0.93212 0.86102 0.93661 1.42428 1.07745 1.01800 1.84593 1.19187 0.92515 0.85351 1.39855 0.91294 1.24743 0.95658 0.97802 1.02848 1.69649 1.05396 1.26746 1.56357 0.86286 0.78255 0.83642 0.78110 1.21307 1.21737 1.21324 1.21775 0.98589 0.93457 1.02170 1.21823 0.99665 0.98438 0.95856 0.89095 0.90767 0.90406 0.83492 0.73783 0.81493 0.91955 0.90157 0.91145 0.87938 0.92013 0.92462 0.92422 0.91634 0.93638 0.78290 0.93489 0.91981 0.91457 0.92223 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 9.00 36.01 0.32 -0.63 16 2 C 0.02 0.21 5.94 -103.95 -0.62 -0.41 16 3 C -0.19 -1.47 9.71 -39.34 -0.38 -1.86 16 4 C 0.33 2.88 7.74 -16.96 -0.13 2.75 16 5 O -0.48 -3.40 13.55 -18.19 -0.25 -3.65 16 6 N -0.51 -5.11 10.37 -12.96 -0.13 -5.24 16 7 C 0.16 1.49 8.80 -17.14 -0.15 1.34 16 8 C -0.19 -1.94 4.88 -104.82 -0.51 -2.45 16 9 C 0.56 6.87 6.40 -12.44 -0.08 6.79 16 10 O -0.53 -8.19 15.30 5.30 0.08 -8.11 16 11 N -0.60 -6.50 2.76 -175.14 -0.48 -6.99 16 12 C 0.07 0.52 8.18 59.84 0.49 1.01 16 13 C 0.14 1.79 2.52 -67.93 -0.17 1.62 16 14 C -0.12 -1.63 5.20 -26.73 -0.14 -1.77 16 15 C -0.13 -2.29 5.50 -26.73 -0.15 -2.43 16 16 C 0.18 3.37 2.77 -67.93 -0.19 3.18 16 17 N -0.73 -17.84 5.12 -53.42 -0.27 -18.12 16 18 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 19 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -28.10 13.06 55.49 0.72 -27.38 16 22 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 C -0.12 -1.91 5.39 -26.71 -0.14 -2.05 16 27 C -0.12 -1.48 5.18 -26.71 -0.14 -1.62 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 30 H 0.08 0.72 7.20 -51.93 -0.37 0.35 16 31 H 0.15 0.77 8.06 -52.49 -0.42 0.34 16 32 H 0.40 0.73 9.06 45.56 0.41 1.14 16 33 H 0.17 1.25 6.64 -52.48 -0.35 0.90 16 34 H 0.06 0.41 7.60 -51.93 -0.39 0.01 16 35 H 0.08 0.58 6.44 -51.93 -0.33 0.25 16 36 H 0.07 0.47 5.69 -51.93 -0.30 0.18 16 37 H 0.10 1.54 6.91 -51.93 -0.36 1.19 16 38 H 0.06 0.76 7.67 -51.93 -0.40 0.36 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 43 H 0.38 10.10 7.80 -40.82 -0.32 9.79 16 44 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.06 0.74 6.68 -51.93 -0.35 0.39 16 LS Contribution 382.69 15.07 5.77 5.77 Total: -1.00 -34.16 382.69 -8.34 -42.51 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -6.52 Total: 7.67 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -2.23 Total: -3.71 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: -0.17 Total: -57.73 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -0.17 Total: -11.76 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.16 -8.34 -42.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963902576.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.021 kcal (2) G-P(sol) polarization free energy of solvation -34.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds