Wall clock time and date at job start Tue Mar 31 2020 17:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38000 * 120.82146 * 2 1 4 4 C 1.39128 * 119.26612 * 180.28483 * 3 2 1 5 5 O 1.35498 * 119.52689 * 179.70352 * 4 3 2 6 6 N 1.32435 * 120.94837 * 359.43570 * 4 3 2 7 7 C 1.31637 * 121.79896 * 0.27442 * 6 4 3 8 8 C 1.39564 * 120.63023 * 0.02562 * 7 6 4 9 9 C 1.47608 * 120.50576 * 180.02562 * 8 7 6 10 10 O 1.21577 * 120.00457 * 130.30165 * 9 8 7 11 11 N 1.34779 * 119.99747 * 310.30831 * 9 8 7 12 12 C 1.46494 * 120.00135 * 4.47622 * 11 9 8 13 13 C 1.46497 * 120.00003 * 184.48371 * 11 9 8 14 14 C 1.53003 * 109.47235 * 239.99367 * 13 11 9 15 15 C 1.52996 * 109.47438 * 179.97438 * 14 13 11 16 16 C 1.53005 * 109.46723 * 60.00033 * 15 14 13 17 17 N 1.46500 * 109.46759 * 179.97438 * 16 15 14 18 18 C 1.36944 * 120.00303 * 274.99970 * 17 16 15 19 19 H 1.07997 * 119.99476 * 0.02562 * 18 17 16 20 20 C 1.38813 * 120.00081 * 180.02562 * 18 17 16 21 21 N 1.31613 * 119.99782 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99773 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47386 * 60.00229 * 22 20 18 24 24 H 1.48497 * 109.47221 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47209 * 300.00100 * 22 20 18 26 26 C 1.52989 * 109.47455 * 299.99933 * 16 15 14 27 27 C 1.52998 * 109.47313 * 119.99465 * 13 11 9 28 28 H 1.09001 * 109.46224 * 264.88920 * 1 2 3 29 29 H 1.08996 * 109.47206 * 24.88437 * 1 2 3 30 30 H 1.08999 * 109.47242 * 144.89186 * 1 2 3 31 31 H 1.08001 * 120.36971 * 359.97438 * 3 2 1 32 32 H 0.96694 * 114.00523 * 269.73645 * 5 4 3 33 33 H 1.08005 * 119.68994 * 179.97438 * 7 6 4 34 34 H 1.09006 * 109.47192 * 93.18864 * 12 11 9 35 35 H 1.09001 * 109.47609 * 213.19500 * 12 11 9 36 36 H 1.09001 * 109.47440 * 333.19032 * 12 11 9 37 37 H 1.08999 * 109.47328 * 359.97438 * 13 11 9 38 38 H 1.08997 * 109.47362 * 300.00279 * 14 13 11 39 39 H 1.09003 * 109.46564 * 59.99600 * 14 13 11 40 40 H 1.08997 * 109.47338 * 300.00619 * 15 14 13 41 41 H 1.09001 * 109.47497 * 179.97438 * 15 14 13 42 42 H 1.09007 * 109.46810 * 60.00411 * 16 15 14 43 43 H 0.96997 * 120.00263 * 95.00477 * 17 16 15 44 44 H 0.97000 * 119.99596 * 179.97438 * 21 20 18 45 45 H 1.09007 * 109.47502 * 300.00055 * 26 16 15 46 46 H 1.08999 * 109.47727 * 180.02562 * 26 16 15 47 47 H 1.08996 * 109.47484 * 300.00003 * 27 13 11 48 48 H 1.09005 * 109.47569 * 60.00164 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6048 1.1473 -0.0060 5 8 4.3043 2.3078 -0.0122 6 7 4.2548 -0.0065 -0.0006 7 6 3.6205 -1.1599 0.0054 8 6 2.2256 -1.2044 0.0056 9 6 1.5172 -2.4993 0.0128 10 8 0.6279 -2.7013 0.8169 11 7 1.8562 -3.4579 -0.8719 12 6 2.9914 -3.2528 -1.7750 13 6 1.0895 -4.7048 -0.9307 14 6 2.0150 -5.8869 -0.6355 15 6 1.2142 -7.1892 -0.6962 16 6 0.6093 -7.3512 -2.0922 17 7 -0.1570 -8.5985 -2.1505 18 6 0.4771 -9.7793 -2.4315 19 1 1.5422 -9.7910 -2.6098 20 6 -0.2491 -10.9610 -2.4873 21 7 -1.5472 -10.9464 -2.2706 22 14 0.6160 -12.5716 -2.8699 23 1 1.6509 -12.8350 -1.8381 24 1 -0.3749 -13.6776 -2.8713 25 1 1.2597 -12.4828 -4.2052 26 6 -0.3161 -6.1692 -2.3874 27 6 0.4851 -4.8666 -2.3268 28 1 -0.3632 -0.0916 1.0236 29 1 -0.3633 0.9322 -0.4324 30 1 -0.3634 -0.8407 -0.5910 31 1 1.6936 2.1314 -0.0004 32 1 4.5070 2.6403 -0.8972 33 1 4.1849 -2.0808 0.0093 34 1 3.8923 -3.6724 -1.3273 35 1 2.7935 -3.7479 -2.7257 36 1 3.1330 -2.1853 -1.9440 37 1 0.2906 -4.6754 -0.1898 38 1 2.8141 -5.9166 -1.3761 39 1 2.4456 -5.7716 0.3592 40 1 0.4152 -7.1593 0.0447 41 1 1.8735 -8.0314 -0.4863 42 1 1.4083 -7.3811 -2.8331 43 1 -1.1136 -8.5880 -1.9901 44 1 -2.0547 -11.7721 -2.3099 45 1 -1.1151 -6.1393 -1.6465 46 1 -0.7474 -6.2849 -3.3817 47 1 -0.1742 -4.0246 -2.5372 48 1 1.2842 -4.8963 -3.0676 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963902576.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:57 Heat of formation + Delta-G solvation = -59.292334 kcal Electronic energy + Delta-G solvation = -28781.284346 eV Core-core repulsion = 24835.404077 eV Total energy + Delta-G solvation = -3945.880270 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.12871 -40.83913 -39.34183 -38.02613 -36.86131 -35.18898 -34.91062 -32.89494 -31.69735 -31.52617 -29.34395 -28.83102 -27.86710 -25.85377 -25.00019 -23.64070 -23.48721 -22.50868 -20.97696 -20.41131 -19.43518 -19.10684 -18.60618 -18.06343 -17.54126 -16.97808 -16.83591 -16.22875 -15.97520 -15.56369 -15.38926 -15.24609 -15.01118 -14.77134 -14.52386 -14.36736 -14.07251 -13.97685 -13.76082 -13.64615 -13.41599 -13.17126 -13.15245 -13.08360 -12.94876 -12.76298 -12.73432 -12.40664 -12.24087 -12.05423 -11.98060 -11.64950 -11.49413 -11.23898 -11.06387 -10.82610 -10.68170 -10.49500 -10.03085 -9.66421 -8.97933 -7.91685 -5.19839 -0.43990 0.04741 1.47845 1.50468 1.50751 1.56628 1.83961 2.43926 2.58051 2.61443 3.33082 3.41124 3.49836 3.56100 3.75400 3.85081 3.87524 3.94737 4.16899 4.19778 4.26453 4.34805 4.37804 4.40832 4.53490 4.54417 4.59411 4.61678 4.65555 4.67085 4.73945 4.80777 4.91428 4.99825 5.02040 5.12012 5.13057 5.18361 5.24280 5.28651 5.37073 5.48755 5.54349 5.56490 5.65500 6.28644 6.30778 6.53610 6.77610 7.00952 7.36118 8.14160 8.36123 9.31898 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.031220 B = 0.002168 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.632180 B =12914.038988 C =13369.941732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.017 3.983 3 C -0.185 4.185 4 C 0.329 3.671 5 O -0.488 6.488 6 N -0.529 5.529 7 C 0.166 3.834 8 C -0.206 4.206 9 C 0.565 3.435 10 O -0.569 6.569 11 N -0.596 5.596 12 C 0.060 3.940 13 C 0.147 3.853 14 C -0.108 4.108 15 C -0.123 4.123 16 C 0.173 3.827 17 N -0.740 5.740 18 C -0.234 4.234 19 H 0.077 0.923 20 C -0.081 4.081 21 N -0.972 5.972 22 Si 0.971 3.029 23 H -0.279 1.279 24 H -0.299 1.299 25 H -0.276 1.276 26 C -0.113 4.113 27 C -0.106 4.106 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.060 0.940 31 H 0.174 0.826 32 H 0.426 0.574 33 H 0.182 0.818 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.038 0.962 41 H 0.046 0.954 42 H 0.050 0.950 43 H 0.370 0.630 44 H 0.249 0.751 45 H 0.049 0.951 46 H 0.063 0.937 47 H 0.071 0.929 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.220 29.292 -0.338 31.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.009 3.991 3 C -0.206 4.206 4 C 0.151 3.849 5 O -0.299 6.299 6 N -0.249 5.249 7 C 0.008 3.992 8 C -0.212 4.212 9 C 0.353 3.647 10 O -0.449 6.449 11 N -0.326 5.326 12 C -0.082 4.082 13 C 0.044 3.956 14 C -0.147 4.147 15 C -0.164 4.164 16 C 0.065 3.935 17 N -0.379 5.379 18 C -0.366 4.366 19 H 0.095 0.905 20 C -0.273 4.273 21 N -0.623 5.623 22 Si 0.800 3.200 23 H -0.206 1.206 24 H -0.225 1.225 25 H -0.202 1.202 26 C -0.152 4.152 27 C -0.145 4.145 28 H 0.099 0.901 29 H 0.120 0.880 30 H 0.079 0.921 31 H 0.191 0.809 32 H 0.288 0.712 33 H 0.199 0.801 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.202 0.798 44 H 0.058 0.942 45 H 0.068 0.932 46 H 0.081 0.919 47 H 0.090 0.910 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.791 29.116 0.583 31.418 hybrid contribution -1.064 -1.369 -0.270 1.755 sum 10.727 27.747 0.313 29.750 Atomic orbital electron populations 1.20895 0.88572 1.04145 1.03614 1.20447 0.97770 0.90881 0.90041 1.22139 0.93367 0.99981 1.05112 1.19552 0.87622 0.85354 0.92356 1.84686 1.75737 1.33369 1.36156 1.67251 1.42415 0.98770 1.16440 1.22997 0.89678 0.95825 0.90736 1.20789 0.95844 0.93756 1.10774 1.18282 0.82287 0.83763 0.80349 1.90796 1.33317 1.81200 1.39600 1.47893 1.32302 1.16166 1.36237 1.22280 0.87935 1.03373 0.94575 1.21024 0.93923 0.82346 0.98354 1.21720 0.98174 0.92696 1.02131 1.22030 0.98847 0.96414 0.99134 1.20478 0.93427 0.85060 0.94497 1.42690 1.07513 1.03139 1.84599 1.19596 0.92914 0.86357 1.37772 0.90491 1.25564 0.96387 1.01232 1.04085 1.69818 1.06890 1.27018 1.58585 0.85240 0.77034 0.79378 0.78310 1.20551 1.22514 1.20208 1.21646 0.98105 0.93980 1.01427 1.21710 1.00002 0.96628 0.96137 0.90124 0.87963 0.92062 0.80878 0.71161 0.80112 0.90245 0.89121 0.89899 0.90622 0.89771 0.92123 0.94289 0.93510 0.93224 0.79841 0.94207 0.93207 0.91865 0.91050 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.73 9.00 71.24 0.64 -1.09 16 2 C 0.02 0.27 5.94 -19.43 -0.12 0.16 16 3 C -0.19 -2.35 9.71 22.43 0.22 -2.13 16 4 C 0.33 4.94 7.74 84.82 0.66 5.60 16 5 O -0.49 -5.59 13.55 -87.99 -1.19 -6.78 16 6 N -0.53 -9.49 10.37 -307.80 -3.19 -12.68 16 7 C 0.17 2.73 8.80 85.04 0.75 3.48 16 8 C -0.21 -3.88 4.88 -20.00 -0.10 -3.97 16 9 C 0.57 13.32 6.40 86.72 0.55 13.88 16 10 O -0.57 -18.06 15.30 -3.96 -0.06 -18.12 16 11 N -0.60 -11.85 2.76 -826.28 -2.28 -14.14 16 12 C 0.06 0.73 8.18 127.77 1.05 1.78 16 13 C 0.15 3.59 2.52 44.99 0.11 3.70 16 14 C -0.11 -2.75 5.20 30.59 0.16 -2.60 16 15 C -0.12 -4.28 5.50 30.59 0.17 -4.11 16 16 C 0.17 6.54 2.77 44.99 0.12 6.66 16 17 N -0.74 -37.13 5.12 -322.94 -1.65 -38.78 16 18 C -0.23 -12.90 9.93 84.03 0.83 -12.07 16 19 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 20 C -0.08 -4.65 5.50 84.86 0.47 -4.19 16 21 N -0.97 -60.07 13.06 21.65 0.28 -59.79 16 22 Si 0.97 46.18 29.55 68.60 2.03 48.21 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 24 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 26 C -0.11 -3.53 5.39 30.61 0.17 -3.36 16 27 C -0.11 -2.45 5.18 30.61 0.16 -2.29 16 28 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.10 0.88 8.07 -2.39 -0.02 0.86 16 30 H 0.06 1.12 7.20 -2.39 -0.02 1.10 16 31 H 0.17 1.20 8.06 -2.91 -0.02 1.17 16 32 H 0.43 0.29 9.06 -74.06 -0.67 -0.38 16 33 H 0.18 2.27 6.64 -2.91 -0.02 2.25 16 34 H 0.08 0.74 7.60 -2.38 -0.02 0.72 16 35 H 0.09 0.95 6.44 -2.39 -0.02 0.94 16 36 H 0.08 0.85 5.69 -2.39 -0.01 0.84 16 37 H 0.08 2.32 6.91 -2.39 -0.02 2.30 16 38 H 0.08 1.80 7.67 -2.39 -0.02 1.78 16 39 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.05 1.85 8.08 -2.38 -0.02 1.83 16 43 H 0.37 20.23 7.80 -92.71 -0.72 19.51 16 44 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 45 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 46 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.09 1.67 6.68 -2.38 -0.02 1.65 16 Total: -1.00 -75.59 382.69 -0.63 -76.22 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: -0.40 Total: 26.43 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 5.84 Total: -0.56 kcal Atomic # 7 Polarization: -118.55 SS G_CDS: -6.84 Total: -125.39 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -1.25 Total: -24.90 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -75.59 -0.63 -76.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963902576.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.926 kcal (2) G-P(sol) polarization free energy of solvation -75.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds